data_3VPQ # _model_server_result.job_id wW3mMbJ57AUXQ6RV05Tgtg _model_server_result.datetime_utc '2025-02-27 02:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3VPQ # _exptl.entry_id 3VPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VPQ _cell.length_a 56.081 _cell.length_b 56.081 _cell.length_c 209.244 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 34.874 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 166 n n N1 HN11 GSH sing 167 n n N1 HN12 GSH sing 168 n n CA1 C1 GSH sing 169 n n CA1 CB1 GSH sing 170 n n CA1 HA1 GSH sing 171 n n C1 O11 GSH doub 172 n n C1 O12 GSH sing 173 n n O12 H12 GSH sing 174 n n CB1 CG1 GSH sing 175 n n CB1 HB12 GSH sing 176 n n CB1 HB13 GSH sing 177 n n CG1 CD1 GSH sing 178 n n CG1 HG12 GSH sing 179 n n CG1 HG13 GSH sing 180 n n CD1 OE1 GSH doub 181 n n CD1 N2 GSH sing 182 n n N2 CA2 GSH sing 183 n n N2 HN2 GSH sing 184 n n CA2 C2 GSH sing 185 n n CA2 CB2 GSH sing 186 n n CA2 HA2 GSH sing 187 n n C2 O2 GSH doub 188 n n C2 N3 GSH sing 189 n n CB2 SG2 GSH sing 190 n n CB2 HB22 GSH sing 191 n n CB2 HB23 GSH sing 192 n n SG2 HSG GSH sing 193 n n N3 CA3 GSH sing 194 n n N3 HN3 GSH sing 195 n n CA3 C3 GSH sing 196 n n CA3 HA31 GSH sing 197 n n CA3 HA32 GSH sing 198 n n C3 O31 GSH doub 199 n n C3 O32 GSH sing 200 n n O32 H32 GSH sing 201 n n # _atom_sites.entry_id 3VPQ _atom_sites.fract_transf_matrix[1][1] 0.017831 _atom_sites.fract_transf_matrix[1][2] 0.010295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 1 GSH GSH . C 3 PGO A 1 302 2 PGO PGO . D 3 PGO A 1 303 3 PGO PGO . E 3 PGO A 1 304 4 PGO PGO . F 3 PGO A 1 305 5 PGO PGO . G 4 PEG A 1 306 6 PEG PEG . H 3 PGO A 1 307 7 PGO PGO . I 3 PGO A 1 308 8 PGO PGO . J 3 PGO A 1 309 9 PGO PGO . K 3 PGO A 1 310 10 PGO PGO . L 3 PGO A 1 311 11 PGO PGO . M 3 PGO A 1 312 12 PGO PGO . N 5 1PE A 1 313 13 1PE 1PE . O 6 HOH A 1 401 1 HOH HOH . O 6 HOH A 2 402 2 HOH HOH . O 6 HOH A 3 403 3 HOH HOH . O 6 HOH A 4 404 4 HOH HOH . O 6 HOH A 5 405 5 HOH HOH . O 6 HOH A 6 406 6 HOH HOH . O 6 HOH A 7 407 7 HOH HOH . O 6 HOH A 8 408 8 HOH HOH . O 6 HOH A 9 409 9 HOH HOH . O 6 HOH A 10 410 10 HOH HOH . O 6 HOH A 11 411 11 HOH HOH . O 6 HOH A 12 412 12 HOH HOH . O 6 HOH A 13 413 13 HOH HOH . O 6 HOH A 14 414 14 HOH HOH . O 6 HOH A 15 415 15 HOH HOH . O 6 HOH A 16 416 16 HOH HOH . O 6 HOH A 17 417 17 HOH HOH . O 6 HOH A 18 418 18 HOH HOH . O 6 HOH A 19 419 19 HOH HOH . O 6 HOH A 20 420 20 HOH HOH . O 6 HOH A 21 421 21 HOH HOH . O 6 HOH A 22 422 22 HOH HOH . O 6 HOH A 23 423 23 HOH HOH . O 6 HOH A 24 424 24 HOH HOH . O 6 HOH A 25 425 25 HOH HOH . O 6 HOH A 26 426 26 HOH HOH . O 6 HOH A 27 427 27 HOH HOH . O 6 HOH A 28 428 28 HOH HOH . O 6 HOH A 29 429 29 HOH HOH . O 6 HOH A 30 430 30 HOH HOH . O 6 HOH A 31 431 31 HOH HOH . O 6 HOH A 32 432 32 HOH HOH . O 6 HOH A 33 433 33 HOH HOH . O 6 HOH A 34 434 34 HOH HOH . O 6 HOH A 35 435 35 HOH HOH . O 6 HOH A 36 436 36 HOH HOH . O 6 HOH A 37 437 37 HOH HOH . O 6 HOH A 38 438 38 HOH HOH . O 6 HOH A 39 439 39 HOH HOH . O 6 HOH A 40 440 40 HOH HOH . O 6 HOH A 41 441 41 HOH HOH . O 6 HOH A 42 442 42 HOH HOH . O 6 HOH A 43 443 43 HOH HOH . O 6 HOH A 44 444 44 HOH HOH . O 6 HOH A 45 445 45 HOH HOH . O 6 HOH A 46 446 46 HOH HOH . O 6 HOH A 47 447 47 HOH HOH . O 6 HOH A 48 448 48 HOH HOH . O 6 HOH A 49 449 49 HOH HOH . O 6 HOH A 50 450 50 HOH HOH . O 6 HOH A 51 451 51 HOH HOH . O 6 HOH A 52 452 52 HOH HOH . O 6 HOH A 53 453 53 HOH HOH . O 6 HOH A 54 454 54 HOH HOH . O 6 HOH A 55 455 55 HOH HOH . O 6 HOH A 56 456 56 HOH HOH . O 6 HOH A 57 457 57 HOH HOH . O 6 HOH A 58 458 58 HOH HOH . O 6 HOH A 59 459 59 HOH HOH . O 6 HOH A 60 460 60 HOH HOH . O 6 HOH A 61 461 61 HOH HOH . O 6 HOH A 62 462 62 HOH HOH . O 6 HOH A 63 463 63 HOH HOH . O 6 HOH A 64 464 64 HOH HOH . O 6 HOH A 65 465 65 HOH HOH . O 6 HOH A 66 466 66 HOH HOH . O 6 HOH A 67 467 67 HOH HOH . O 6 HOH A 68 468 68 HOH HOH . O 6 HOH A 69 469 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 20.41 -19.186 20.832 1 26.04 ? N1 GSH 301 A 1 HETATM 2 C CA1 GSH . . . B 2 19.743 -20.507 20.784 1 27.01 ? CA1 GSH 301 A 1 HETATM 3 C C1 GSH . . . B 2 20.282 -21.379 19.682 1 24.81 ? C1 GSH 301 A 1 HETATM 4 O O11 GSH . . . B 2 20.29 -22.653 19.749 1 24.75 ? O11 GSH 301 A 1 HETATM 5 O O12 GSH . . . B 2 20.66 -20.859 18.613 1 25.61 ? O12 GSH 301 A 1 HETATM 6 C CB1 GSH . . . B 2 18.273 -20.251 20.432 1 25.66 ? CB1 GSH 301 A 1 HETATM 7 C CG1 GSH . . . B 2 17.473 -21.5 20.567 1 24.66 ? CG1 GSH 301 A 1 HETATM 8 C CD1 GSH . . . B 2 15.99 -21.306 20.387 1 34.26 ? CD1 GSH 301 A 1 HETATM 9 O OE1 GSH . . . B 2 15.46 -20.196 20.229 1 30.16 ? OE1 GSH 301 A 1 HETATM 10 N N2 GSH . . . B 2 15.208 -22.485 20.405 1 27.68 ? N2 GSH 301 A 1 HETATM 11 C CA2 GSH . . . B 2 13.751 -22.366 20.241 1 29.58 ? CA2 GSH 301 A 1 HETATM 12 C C2 GSH . . . B 2 13.104 -23.121 21.402 1 28.99 ? C2 GSH 301 A 1 HETATM 13 O O2 GSH . . . B 2 13.649 -24.086 21.984 1 28.53 ? O2 GSH 301 A 1 HETATM 14 C CB2 GSH . . . B 2 13.405 -22.96 18.915 1 34.71 ? CB2 GSH 301 A 1 HETATM 15 S SG2 GSH . . . B 2 14.193 -22.342 17.433 1 44.92 ? SG2 GSH 301 A 1 HETATM 16 N N3 GSH . . . B 2 11.82 -22.672 21.825 1 32.9 ? N3 GSH 301 A 1 HETATM 17 C CA3 GSH . . . B 2 11.214 -23.438 22.889 1 35.65 ? CA3 GSH 301 A 1 HETATM 18 C C3 GSH . . . B 2 11.094 -22.838 24.209 1 42.27 ? C3 GSH 301 A 1 HETATM 19 O O31 GSH . . . B 2 10.415 -23.438 25.075 1 34.74 ? O31 GSH 301 A 1 HETATM 20 O O32 GSH . . . B 2 11.697 -21.767 24.434 1 42.98 ? O32 GSH 301 A 1 HETATM 21 H HN11 GSH . . . B 2 20.232 -18.779 21.642 1 31.28 ? HN11 GSH 301 A 1 HETATM 22 H HN12 GSH . . . B 2 21.308 -19.296 20.739 1 31.28 ? HN12 GSH 301 A 1 HETATM 23 H HA1 GSH . . . B 2 19.808 -20.941 21.635 1 32.45 ? HA1 GSH 301 A 1 HETATM 24 H HB12 GSH . . . B 2 17.915 -19.573 21.03 1 30.82 ? HB12 GSH 301 A 1 HETATM 25 H HB13 GSH . . . B 2 18.217 -19.94 19.53 1 30.82 ? HB13 GSH 301 A 1 HETATM 26 H HG12 GSH . . . B 2 17.789 -22.127 19.883 1 29.62 ? HG12 GSH 301 A 1 HETATM 27 H HG13 GSH . . . B 2 17.657 -21.903 21.432 1 29.62 ? HG13 GSH 301 A 1 HETATM 28 H HN2 GSH . . . B 2 15.601 -23.305 20.524 1 33.25 ? HN2 GSH 301 A 1 HETATM 29 H HA2 GSH . . . B 2 13.505 -21.415 20.239 1 35.52 ? HA2 GSH 301 A 1 HETATM 30 H HB22 GSH . . . B 2 12.439 -22.857 18.794 1 41.68 ? HB22 GSH 301 A 1 HETATM 31 H HB23 GSH . . . B 2 13.595 -23.912 18.967 1 41.68 ? HB23 GSH 301 A 1 HETATM 32 H HSG GSH . . . B 2 13.902 -23.042 16.503 1 53.93 ? HSG GSH 301 A 1 HETATM 33 H HN3 GSH . . . B 2 11.384 -21.97 21.413 1 39.51 ? HN3 GSH 301 A 1 HETATM 34 H HA31 GSH . . . B 2 10.335 -23.723 22.591 1 42.82 ? HA31 GSH 301 A 1 HETATM 35 H HA32 GSH . . . B 2 11.766 -24.247 23.009 1 42.82 ? HA32 GSH 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #