data_3VPQ # _model_server_result.job_id PXsE7cvQMqLaXwpKx2z-Tg _model_server_result.datetime_utc '2025-02-27 02:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 3VPQ # _exptl.entry_id 3VPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VPQ _cell.length_a 56.081 _cell.length_b 56.081 _cell.length_c 209.244 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 34.874 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 326 n n C1 O1 PGO sing 327 n n C1 H11 PGO sing 328 n n C1 H12 PGO sing 329 n n C2 C3 PGO sing 330 n n C2 O2 PGO sing 331 n n C2 H2 PGO sing 332 n n C3 H31 PGO sing 333 n n C3 H32 PGO sing 334 n n C3 H33 PGO sing 335 n n O1 HO1 PGO sing 336 n n O2 HO2 PGO sing 337 n n # _atom_sites.entry_id 3VPQ _atom_sites.fract_transf_matrix[1][1] 0.017831 _atom_sites.fract_transf_matrix[1][2] 0.010295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 1 GSH GSH . C 3 PGO A 1 302 2 PGO PGO . D 3 PGO A 1 303 3 PGO PGO . E 3 PGO A 1 304 4 PGO PGO . F 3 PGO A 1 305 5 PGO PGO . G 4 PEG A 1 306 6 PEG PEG . H 3 PGO A 1 307 7 PGO PGO . I 3 PGO A 1 308 8 PGO PGO . J 3 PGO A 1 309 9 PGO PGO . K 3 PGO A 1 310 10 PGO PGO . L 3 PGO A 1 311 11 PGO PGO . M 3 PGO A 1 312 12 PGO PGO . N 5 1PE A 1 313 13 1PE 1PE . O 6 HOH A 1 401 1 HOH HOH . O 6 HOH A 2 402 2 HOH HOH . O 6 HOH A 3 403 3 HOH HOH . O 6 HOH A 4 404 4 HOH HOH . O 6 HOH A 5 405 5 HOH HOH . O 6 HOH A 6 406 6 HOH HOH . O 6 HOH A 7 407 7 HOH HOH . O 6 HOH A 8 408 8 HOH HOH . O 6 HOH A 9 409 9 HOH HOH . O 6 HOH A 10 410 10 HOH HOH . O 6 HOH A 11 411 11 HOH HOH . O 6 HOH A 12 412 12 HOH HOH . O 6 HOH A 13 413 13 HOH HOH . O 6 HOH A 14 414 14 HOH HOH . O 6 HOH A 15 415 15 HOH HOH . O 6 HOH A 16 416 16 HOH HOH . O 6 HOH A 17 417 17 HOH HOH . O 6 HOH A 18 418 18 HOH HOH . O 6 HOH A 19 419 19 HOH HOH . O 6 HOH A 20 420 20 HOH HOH . O 6 HOH A 21 421 21 HOH HOH . O 6 HOH A 22 422 22 HOH HOH . O 6 HOH A 23 423 23 HOH HOH . O 6 HOH A 24 424 24 HOH HOH . O 6 HOH A 25 425 25 HOH HOH . O 6 HOH A 26 426 26 HOH HOH . O 6 HOH A 27 427 27 HOH HOH . O 6 HOH A 28 428 28 HOH HOH . O 6 HOH A 29 429 29 HOH HOH . O 6 HOH A 30 430 30 HOH HOH . O 6 HOH A 31 431 31 HOH HOH . O 6 HOH A 32 432 32 HOH HOH . O 6 HOH A 33 433 33 HOH HOH . O 6 HOH A 34 434 34 HOH HOH . O 6 HOH A 35 435 35 HOH HOH . O 6 HOH A 36 436 36 HOH HOH . O 6 HOH A 37 437 37 HOH HOH . O 6 HOH A 38 438 38 HOH HOH . O 6 HOH A 39 439 39 HOH HOH . O 6 HOH A 40 440 40 HOH HOH . O 6 HOH A 41 441 41 HOH HOH . O 6 HOH A 42 442 42 HOH HOH . O 6 HOH A 43 443 43 HOH HOH . O 6 HOH A 44 444 44 HOH HOH . O 6 HOH A 45 445 45 HOH HOH . O 6 HOH A 46 446 46 HOH HOH . O 6 HOH A 47 447 47 HOH HOH . O 6 HOH A 48 448 48 HOH HOH . O 6 HOH A 49 449 49 HOH HOH . O 6 HOH A 50 450 50 HOH HOH . O 6 HOH A 51 451 51 HOH HOH . O 6 HOH A 52 452 52 HOH HOH . O 6 HOH A 53 453 53 HOH HOH . O 6 HOH A 54 454 54 HOH HOH . O 6 HOH A 55 455 55 HOH HOH . O 6 HOH A 56 456 56 HOH HOH . O 6 HOH A 57 457 57 HOH HOH . O 6 HOH A 58 458 58 HOH HOH . O 6 HOH A 59 459 59 HOH HOH . O 6 HOH A 60 460 60 HOH HOH . O 6 HOH A 61 461 61 HOH HOH . O 6 HOH A 62 462 62 HOH HOH . O 6 HOH A 63 463 63 HOH HOH . O 6 HOH A 64 464 64 HOH HOH . O 6 HOH A 65 465 65 HOH HOH . O 6 HOH A 66 466 66 HOH HOH . O 6 HOH A 67 467 67 HOH HOH . O 6 HOH A 68 468 68 HOH HOH . O 6 HOH A 69 469 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . H 3 13.683 -15.926 17.167 1 79.31 ? C1 PGO 307 A 1 HETATM 2 C C2 PGO . . . H 3 13.147 -16.748 18.293 1 82.82 ? C2 PGO 307 A 1 HETATM 3 C C3 PGO . . . H 3 12.761 -18.099 17.787 1 78.45 ? C3 PGO 307 A 1 HETATM 4 O O1 PGO . . . H 3 14.42 -14.799 17.479 1 73.42 ? O1 PGO 307 A 1 HETATM 5 O O2 PGO . . . H 3 12.054 -16.108 18.847 1 84.6 ? O2 PGO 307 A 1 HETATM 6 H H11 PGO . . . H 3 12.927 -15.642 16.624 1 95.2 ? H11 PGO 307 A 1 HETATM 7 H H12 PGO . . . H 3 14.244 -16.504 16.621 1 95.2 ? H12 PGO 307 A 1 HETATM 8 H H2 PGO . . . H 3 13.837 -16.847 18.969 1 99.42 ? H2 PGO 307 A 1 HETATM 9 H H31 PGO . . . H 3 13.557 -18.569 17.478 1 94.17 ? H31 PGO 307 A 1 HETATM 10 H H32 PGO . . . H 3 12.342 -18.607 18.504 1 94.17 ? H32 PGO 307 A 1 HETATM 11 H H33 PGO . . . H 3 12.134 -18.003 17.048 1 94.17 ? H33 PGO 307 A 1 HETATM 12 H HO1 PGO . . . H 3 14.83 -14.503 16.75 1 88.14 ? HO1 PGO 307 A 1 HETATM 13 H HO2 PGO . . . H 3 12.142 -16.083 19.73 1 101.55 ? HO2 PGO 307 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #