data_3VPQ # _model_server_result.job_id XlF4H9AXcu6XgpacMO9TbA _model_server_result.datetime_utc '2025-02-27 02:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 3VPQ # _exptl.entry_id 3VPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VPQ _cell.length_a 56.081 _cell.length_b 56.081 _cell.length_c 209.244 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 34.874 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3VPQ _atom_sites.fract_transf_matrix[1][1] 0.017831 _atom_sites.fract_transf_matrix[1][2] 0.010295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 1 GSH GSH . C 3 PGO A 1 302 2 PGO PGO . D 3 PGO A 1 303 3 PGO PGO . E 3 PGO A 1 304 4 PGO PGO . F 3 PGO A 1 305 5 PGO PGO . G 4 PEG A 1 306 6 PEG PEG . H 3 PGO A 1 307 7 PGO PGO . I 3 PGO A 1 308 8 PGO PGO . J 3 PGO A 1 309 9 PGO PGO . K 3 PGO A 1 310 10 PGO PGO . L 3 PGO A 1 311 11 PGO PGO . M 3 PGO A 1 312 12 PGO PGO . N 5 1PE A 1 313 13 1PE 1PE . O 6 HOH A 1 401 1 HOH HOH . O 6 HOH A 2 402 2 HOH HOH . O 6 HOH A 3 403 3 HOH HOH . O 6 HOH A 4 404 4 HOH HOH . O 6 HOH A 5 405 5 HOH HOH . O 6 HOH A 6 406 6 HOH HOH . O 6 HOH A 7 407 7 HOH HOH . O 6 HOH A 8 408 8 HOH HOH . O 6 HOH A 9 409 9 HOH HOH . O 6 HOH A 10 410 10 HOH HOH . O 6 HOH A 11 411 11 HOH HOH . O 6 HOH A 12 412 12 HOH HOH . O 6 HOH A 13 413 13 HOH HOH . O 6 HOH A 14 414 14 HOH HOH . O 6 HOH A 15 415 15 HOH HOH . O 6 HOH A 16 416 16 HOH HOH . O 6 HOH A 17 417 17 HOH HOH . O 6 HOH A 18 418 18 HOH HOH . O 6 HOH A 19 419 19 HOH HOH . O 6 HOH A 20 420 20 HOH HOH . O 6 HOH A 21 421 21 HOH HOH . O 6 HOH A 22 422 22 HOH HOH . O 6 HOH A 23 423 23 HOH HOH . O 6 HOH A 24 424 24 HOH HOH . O 6 HOH A 25 425 25 HOH HOH . O 6 HOH A 26 426 26 HOH HOH . O 6 HOH A 27 427 27 HOH HOH . O 6 HOH A 28 428 28 HOH HOH . O 6 HOH A 29 429 29 HOH HOH . O 6 HOH A 30 430 30 HOH HOH . O 6 HOH A 31 431 31 HOH HOH . O 6 HOH A 32 432 32 HOH HOH . O 6 HOH A 33 433 33 HOH HOH . O 6 HOH A 34 434 34 HOH HOH . O 6 HOH A 35 435 35 HOH HOH . O 6 HOH A 36 436 36 HOH HOH . O 6 HOH A 37 437 37 HOH HOH . O 6 HOH A 38 438 38 HOH HOH . O 6 HOH A 39 439 39 HOH HOH . O 6 HOH A 40 440 40 HOH HOH . O 6 HOH A 41 441 41 HOH HOH . O 6 HOH A 42 442 42 HOH HOH . O 6 HOH A 43 443 43 HOH HOH . O 6 HOH A 44 444 44 HOH HOH . O 6 HOH A 45 445 45 HOH HOH . O 6 HOH A 46 446 46 HOH HOH . O 6 HOH A 47 447 47 HOH HOH . O 6 HOH A 48 448 48 HOH HOH . O 6 HOH A 49 449 49 HOH HOH . O 6 HOH A 50 450 50 HOH HOH . O 6 HOH A 51 451 51 HOH HOH . O 6 HOH A 52 452 52 HOH HOH . O 6 HOH A 53 453 53 HOH HOH . O 6 HOH A 54 454 54 HOH HOH . O 6 HOH A 55 455 55 HOH HOH . O 6 HOH A 56 456 56 HOH HOH . O 6 HOH A 57 457 57 HOH HOH . O 6 HOH A 58 458 58 HOH HOH . O 6 HOH A 59 459 59 HOH HOH . O 6 HOH A 60 460 60 HOH HOH . O 6 HOH A 61 461 61 HOH HOH . O 6 HOH A 62 462 62 HOH HOH . O 6 HOH A 63 463 63 HOH HOH . O 6 HOH A 64 464 64 HOH HOH . O 6 HOH A 65 465 65 HOH HOH . O 6 HOH A 66 466 66 HOH HOH . O 6 HOH A 67 467 67 HOH HOH . O 6 HOH A 68 468 68 HOH HOH . O 6 HOH A 69 469 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . N 5 30.496 -17.615 -8.493 1 49.86 ? OH2 1PE 313 A 1 HETATM 2 C C12 1PE . . . N 5 29.338 -17.651 -7.732 1 55.71 ? C12 1PE 313 A 1 HETATM 3 C C22 1PE . . . N 5 28.389 -16.494 -7.862 1 53.04 ? C22 1PE 313 A 1 HETATM 4 O OH3 1PE . . . N 5 27.225 -16.684 -8.633 1 51.29 ? OH3 1PE 313 A 1 HETATM 5 C C13 1PE . . . N 5 25.379 -15.896 -10.019 1 62.32 ? C13 1PE 313 A 1 HETATM 6 C C23 1PE . . . N 5 26.513 -15.56 -9.091 1 54.36 ? C23 1PE 313 A 1 HETATM 7 O OH4 1PE . . . N 5 25.7 -16.954 -10.841 1 62.9 ? OH4 1PE 313 A 1 HETATM 8 C C14 1PE . . . N 5 25.18 -18.72 -12.396 1 65.07 ? C14 1PE 313 A 1 HETATM 9 C C24 1PE . . . N 5 24.709 -17.769 -11.348 1 61.05 ? C24 1PE 313 A 1 HETATM 10 O OH5 1PE . . . N 5 24.95 -20.071 -12.163 1 60.49 ? OH5 1PE 313 A 1 HETATM 11 C C15 1PE . . . N 5 26.807 -21.7 -12.049 1 60.33 ? C15 1PE 313 A 1 HETATM 12 C C25 1PE . . . N 5 25.746 -20.986 -12.876 1 64.58 ? C25 1PE 313 A 1 HETATM 13 O OH6 1PE . . . N 5 28.136 -21.361 -12.331 1 65.64 ? OH6 1PE 313 A 1 HETATM 14 C C16 1PE . . . N 5 29.071 -22.308 -10.191 1 66.52 ? C16 1PE 313 A 1 HETATM 15 C C26 1PE . . . N 5 29.098 -21.273 -11.295 1 70.09 ? C26 1PE 313 A 1 HETATM 16 O OH7 1PE . . . N 5 29.803 -21.97 -9.039 1 59.61 ? OH7 1PE 313 A 1 HETATM 17 H HO2 1PE . . . N 5 30.953 -18.375 -8.377 1 59.86 ? HO2 1PE 313 A 1 HETATM 18 H H121 1PE . . . N 5 29.615 -17.693 -6.801 1 66.88 ? H121 1PE 313 A 1 HETATM 19 H H122 1PE . . . N 5 28.853 -18.471 -7.939 1 66.88 ? H122 1PE 313 A 1 HETATM 20 H H221 1PE . . . N 5 28.884 -15.734 -8.227 1 63.68 ? H221 1PE 313 A 1 HETATM 21 H H222 1PE . . . N 5 28.095 -16.258 -6.96 1 63.68 ? H222 1PE 313 A 1 HETATM 22 H H131 1PE . . . N 5 25.147 -15.114 -10.554 1 74.82 ? H131 1PE 313 A 1 HETATM 23 H H132 1PE . . . N 5 24.602 -16.157 -9.475 1 74.82 ? H132 1PE 313 A 1 HETATM 24 H H231 1PE . . . N 5 26.159 -15.077 -8.325 1 65.26 ? H231 1PE 313 A 1 HETATM 25 H H232 1PE . . . N 5 27.135 -14.98 -9.566 1 65.26 ? H232 1PE 313 A 1 HETATM 26 H H141 1PE . . . N 5 24.752 -18.479 -13.243 1 78.11 ? H141 1PE 313 A 1 HETATM 27 H H142 1PE . . . N 5 26.147 -18.595 -12.497 1 78.11 ? H142 1PE 313 A 1 HETATM 28 H H241 1PE . . . N 5 24.028 -17.197 -11.738 1 73.29 ? H241 1PE 313 A 1 HETATM 29 H H242 1PE . . . N 5 24.33 -18.275 -10.622 1 73.29 ? H242 1PE 313 A 1 HETATM 30 H H151 1PE . . . N 5 26.637 -21.503 -11.104 1 72.42 ? H151 1PE 313 A 1 HETATM 31 H H152 1PE . . . N 5 26.703 -22.659 -12.184 1 72.42 ? H152 1PE 313 A 1 HETATM 32 H H251 1PE . . . N 5 25.162 -21.66 -13.267 1 77.53 ? H251 1PE 313 A 1 HETATM 33 H H252 1PE . . . N 5 26.186 -20.511 -13.597 1 77.53 ? H252 1PE 313 A 1 HETATM 34 H H161 1PE . . . N 5 29.452 -23.132 -10.546 1 79.86 ? H161 1PE 313 A 1 HETATM 35 H H162 1PE . . . N 5 28.146 -22.478 -9.943 1 79.86 ? H162 1PE 313 A 1 HETATM 36 H H261 1PE . . . N 5 29.015 -20.397 -10.879 1 84.14 ? H261 1PE 313 A 1 HETATM 37 H H262 1PE . . . N 5 29.97 -21.319 -11.715 1 84.14 ? H262 1PE 313 A 1 HETATM 38 H HO7 1PE . . . N 5 30.48 -22.551 -8.933 1 71.56 ? HO7 1PE 313 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #