data_3VPT # _model_server_result.job_id EZ5ZlBzKlKkXM3i3tCQHmQ _model_server_result.datetime_utc '2024-11-05 03:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3VPT # _exptl.entry_id 3VPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VPT _cell.length_a 56.128 _cell.length_b 56.128 _cell.length_c 209.893 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 34.982167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 283 n n C1 O1 PGO sing 284 n n C1 H11 PGO sing 285 n n C1 H12 PGO sing 286 n n C2 C3 PGO sing 287 n n C2 O2 PGO sing 288 n n C2 H2 PGO sing 289 n n C3 H31 PGO sing 290 n n C3 H32 PGO sing 291 n n C3 H33 PGO sing 292 n n O1 HO1 PGO sing 293 n n O2 HO2 PGO sing 294 n n # _atom_sites.entry_id 3VPT _atom_sites.fract_transf_matrix[1][1] 0.017816 _atom_sites.fract_transf_matrix[1][2] 0.010286 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGO A 1 301 1 PGO PGO . C 2 PGO A 1 302 2 PGO PGO . D 2 PGO A 1 303 3 PGO PGO . E 2 PGO A 1 304 4 PGO PGO . F 3 PEG A 1 305 5 PEG PEG . G 3 PEG A 1 306 6 PEG PEG . H 3 PEG A 1 307 7 PEG PEG . I 2 PGO A 1 308 8 PGO PGO . J 2 PGO A 1 309 9 PGO PGO . K 4 PG4 A 1 310 10 PG4 PG4 . L 3 PEG A 1 311 11 PEG PEG . M 5 HOH A 1 401 1 HOH HOH . M 5 HOH A 2 402 2 HOH HOH . M 5 HOH A 3 403 3 HOH HOH . M 5 HOH A 4 404 4 HOH HOH . M 5 HOH A 5 405 5 HOH HOH . M 5 HOH A 6 406 6 HOH HOH . M 5 HOH A 7 407 7 HOH HOH . M 5 HOH A 8 408 8 HOH HOH . M 5 HOH A 9 409 9 HOH HOH . M 5 HOH A 10 410 10 HOH HOH . M 5 HOH A 11 411 11 HOH HOH . M 5 HOH A 12 412 12 HOH HOH . M 5 HOH A 13 413 13 HOH HOH . M 5 HOH A 14 414 14 HOH HOH . M 5 HOH A 15 415 15 HOH HOH . M 5 HOH A 16 416 16 HOH HOH . M 5 HOH A 17 417 17 HOH HOH . M 5 HOH A 18 418 18 HOH HOH . M 5 HOH A 19 419 19 HOH HOH . M 5 HOH A 20 420 20 HOH HOH . M 5 HOH A 21 421 21 HOH HOH . M 5 HOH A 22 422 22 HOH HOH . M 5 HOH A 23 423 23 HOH HOH . M 5 HOH A 24 424 24 HOH HOH . M 5 HOH A 25 425 25 HOH HOH . M 5 HOH A 26 426 26 HOH HOH . M 5 HOH A 27 427 27 HOH HOH . M 5 HOH A 28 428 28 HOH HOH . M 5 HOH A 29 429 29 HOH HOH . M 5 HOH A 30 430 30 HOH HOH . M 5 HOH A 31 431 31 HOH HOH . M 5 HOH A 32 432 32 HOH HOH . M 5 HOH A 33 433 33 HOH HOH . M 5 HOH A 34 434 34 HOH HOH . M 5 HOH A 35 435 35 HOH HOH . M 5 HOH A 36 436 36 HOH HOH . M 5 HOH A 37 437 37 HOH HOH . M 5 HOH A 38 438 38 HOH HOH . M 5 HOH A 39 439 39 HOH HOH . M 5 HOH A 40 440 40 HOH HOH . M 5 HOH A 41 441 41 HOH HOH . M 5 HOH A 42 442 42 HOH HOH . M 5 HOH A 43 443 43 HOH HOH . M 5 HOH A 44 444 44 HOH HOH . M 5 HOH A 45 445 45 HOH HOH . M 5 HOH A 46 446 46 HOH HOH . M 5 HOH A 47 447 47 HOH HOH . M 5 HOH A 48 448 48 HOH HOH . M 5 HOH A 49 449 49 HOH HOH . M 5 HOH A 50 450 50 HOH HOH . M 5 HOH A 51 451 51 HOH HOH . M 5 HOH A 52 452 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . C 2 17.258 -26.852 2.208 1 78.83 ? C1 PGO 302 A 1 HETATM 2 C C2 PGO . . . C 2 18.065 -27.642 3.178 1 74.63 ? C2 PGO 302 A 1 HETATM 3 C C3 PGO . . . C 2 19.37 -27.962 2.539 1 72.54 ? C3 PGO 302 A 1 HETATM 4 O O1 PGO . . . C 2 16.585 -27.547 1.226 1 84.88 ? O1 PGO 302 A 1 HETATM 5 O O2 PGO . . . C 2 17.414 -28.808 3.508 1 80.63 ? O2 PGO 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #