data_3VPT
#
_model_server_result.job_id            37CqeFRTBvID1EH0XkziDg 
_model_server_result.datetime_utc      '2024-11-05 03:17:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vpt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    3VPT 
#
_exptl.entry_id    3VPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VPT 
_cell.length_a            56.128 
_cell.length_b            56.128 
_cell.length_c            209.893 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 34.982167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGO sing 283 n n 
C1 O1 PGO sing 284 n n 
C1 H11 PGO sing 285 n n 
C1 H12 PGO sing 286 n n 
C2 C3 PGO sing 287 n n 
C2 O2 PGO sing 288 n n 
C2 H2 PGO sing 289 n n 
C3 H31 PGO sing 290 n n 
C3 H32 PGO sing 291 n n 
C3 H33 PGO sing 292 n n 
O1 HO1 PGO sing 293 n n 
O2 HO2 PGO sing 294 n n 
#
_atom_sites.entry_id                     3VPT 
_atom_sites.fract_transf_matrix[1][1]    0.017816 
_atom_sites.fract_transf_matrix[1][2]    0.010286 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004764 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGO A 1 301 1 PGO PGO . 
C 2 PGO A 1 302 2 PGO PGO . 
D 2 PGO A 1 303 3 PGO PGO . 
E 2 PGO A 1 304 4 PGO PGO . 
F 3 PEG A 1 305 5 PEG PEG . 
G 3 PEG A 1 306 6 PEG PEG . 
H 3 PEG A 1 307 7 PEG PEG . 
I 2 PGO A 1 308 8 PGO PGO . 
J 2 PGO A 1 309 9 PGO PGO . 
K 4 PG4 A 1 310 10 PG4 PG4 . 
L 3 PEG A 1 311 11 PEG PEG . 
M 5 HOH A 1 401 1 HOH HOH . 
M 5 HOH A 2 402 2 HOH HOH . 
M 5 HOH A 3 403 3 HOH HOH . 
M 5 HOH A 4 404 4 HOH HOH . 
M 5 HOH A 5 405 5 HOH HOH . 
M 5 HOH A 6 406 6 HOH HOH . 
M 5 HOH A 7 407 7 HOH HOH . 
M 5 HOH A 8 408 8 HOH HOH . 
M 5 HOH A 9 409 9 HOH HOH . 
M 5 HOH A 10 410 10 HOH HOH . 
M 5 HOH A 11 411 11 HOH HOH . 
M 5 HOH A 12 412 12 HOH HOH . 
M 5 HOH A 13 413 13 HOH HOH . 
M 5 HOH A 14 414 14 HOH HOH . 
M 5 HOH A 15 415 15 HOH HOH . 
M 5 HOH A 16 416 16 HOH HOH . 
M 5 HOH A 17 417 17 HOH HOH . 
M 5 HOH A 18 418 18 HOH HOH . 
M 5 HOH A 19 419 19 HOH HOH . 
M 5 HOH A 20 420 20 HOH HOH . 
M 5 HOH A 21 421 21 HOH HOH . 
M 5 HOH A 22 422 22 HOH HOH . 
M 5 HOH A 23 423 23 HOH HOH . 
M 5 HOH A 24 424 24 HOH HOH . 
M 5 HOH A 25 425 25 HOH HOH . 
M 5 HOH A 26 426 26 HOH HOH . 
M 5 HOH A 27 427 27 HOH HOH . 
M 5 HOH A 28 428 28 HOH HOH . 
M 5 HOH A 29 429 29 HOH HOH . 
M 5 HOH A 30 430 30 HOH HOH . 
M 5 HOH A 31 431 31 HOH HOH . 
M 5 HOH A 32 432 32 HOH HOH . 
M 5 HOH A 33 433 33 HOH HOH . 
M 5 HOH A 34 434 34 HOH HOH . 
M 5 HOH A 35 435 35 HOH HOH . 
M 5 HOH A 36 436 36 HOH HOH . 
M 5 HOH A 37 437 37 HOH HOH . 
M 5 HOH A 38 438 38 HOH HOH . 
M 5 HOH A 39 439 39 HOH HOH . 
M 5 HOH A 40 440 40 HOH HOH . 
M 5 HOH A 41 441 41 HOH HOH . 
M 5 HOH A 42 442 42 HOH HOH . 
M 5 HOH A 43 443 43 HOH HOH . 
M 5 HOH A 44 444 44 HOH HOH . 
M 5 HOH A 45 445 45 HOH HOH . 
M 5 HOH A 46 446 46 HOH HOH . 
M 5 HOH A 47 447 47 HOH HOH . 
M 5 HOH A 48 448 48 HOH HOH . 
M 5 HOH A 49 449 49 HOH HOH . 
M 5 HOH A 50 450 50 HOH HOH . 
M 5 HOH A 51 451 51 HOH HOH . 
M 5 HOH A 52 452 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGO . . . E 2 41.368 -26.902 16.546 1 78.61 ? C1 PGO 304 A 1 
HETATM 2 C C2 PGO . . . E 2 40.386 -27.787 15.862 1 71.92 ? C2 PGO 304 A 1 
HETATM 3 C C3 PGO . . . E 2 39.096 -27.062 15.659 1 60.81 ? C3 PGO 304 A 1 
HETATM 4 O O1 PGO . . . E 2 42.343 -27.537 17.294 1 86.25 ? O1 PGO 304 A 1 
HETATM 5 O O2 PGO . . . E 2 40.189 -28.926 16.618 1 66.21 ? O2 PGO 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#