data_3VQ2 # _model_server_result.job_id oB-9OlNm5bExrj5QDN-ynQ _model_server_result.datetime_utc '2024-10-23 20:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":302}' # _entry.id 3VQ2 # _exptl.entry_id 3VQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.318 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.16 _cell.angle_gamma 90 _cell.entry_id 3VQ2 _cell.length_a 85.813 _cell.length_b 144.32 _cell.length_c 86.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 P N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 802 NAG 3 n E NAG 2 E 2 NAG A 803 NAG 3 n F NAG 1 F 1 NAG B 802 NAG 3 n F NAG 2 F 2 NAG B 803 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 28 1_555 A SG CYS 18 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 259 A CYS 280 1_555 A SG CYS 283 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 367 A CYS 388 1_555 A SG CYS 368 A CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 559 A CYS 580 1_555 A SG CYS 585 A CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 9 C CYS 25 1_555 B SG CYS 35 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 21 C CYS 37 1_555 B SG CYS 132 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 79 C CYS 95 1_555 B SG CYS 89 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 C SG CYS 7 B CYS 28 1_555 C SG CYS 18 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 259 B CYS 280 1_555 C SG CYS 283 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 C SG CYS 367 B CYS 388 1_555 C SG CYS 368 B CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 559 B CYS 580 1_555 C SG CYS 585 B CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 D SG CYS 9 D CYS 25 1_555 D SG CYS 35 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 D SG CYS 21 D CYS 37 1_555 D SG CYS 132 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 D SG CYS 79 D CYS 95 1_555 D SG CYS 89 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A ND2 ASN 151 A ASN 172 1_555 G C1 NAG . A NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A ND2 ASN 183 A ASN 204 1_555 H C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A ND2 ASN 503 A ASN 524 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale4 J C1 LP4 . C LP4 300 1_555 K O6 LP5 . C LP5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 J O44 LP4 . C LP4 300 1_555 L C1 DAO . C DAO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 J O43 LP4 . C LP4 300 1_555 M C1 MYR . C MYR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 C ND2 ASN 503 B ASN 524 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 N C1 LP4 . D LP4 300 1_555 O O6 LP5 . D LP5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 N O44 LP4 . D LP4 300 1_555 P C1 DAO . D DAO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 N O43 LP4 . D LP4 300 1_555 Q C1 MYR . D MYR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C12 H24 O2' _chem_comp.formula_weight 200.318 _chem_comp.id DAO _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DAO doub 83 n n O2 C1 DAO sing 84 n n O2 HO2 DAO sing 85 n n C1 C2 DAO sing 86 n n C2 C3 DAO sing 87 n n C2 H21 DAO sing 88 n n C2 H22 DAO sing 89 n n C3 C4 DAO sing 90 n n C3 H31 DAO sing 91 n n C3 H32 DAO sing 92 n n C4 C5 DAO sing 93 n n C4 H41 DAO sing 94 n n C4 H42 DAO sing 95 n n C5 C6 DAO sing 96 n n C5 H51 DAO sing 97 n n C5 H52 DAO sing 98 n n C6 C7 DAO sing 99 n n C6 H61 DAO sing 100 n n C6 H62 DAO sing 101 n n C7 C8 DAO sing 102 n n C7 H71 DAO sing 103 n n C7 H72 DAO sing 104 n n C8 C9 DAO sing 105 n n C8 H81 DAO sing 106 n n C8 H82 DAO sing 107 n n C9 C10 DAO sing 108 n n C9 H91 DAO sing 109 n n C9 H92 DAO sing 110 n n C10 C11 DAO sing 111 n n C10 H101 DAO sing 112 n n C10 H102 DAO sing 113 n n C11 C12 DAO sing 114 n n C11 H111 DAO sing 115 n n C11 H112 DAO sing 116 n n C12 H121 DAO sing 117 n n C12 H122 DAO sing 118 n n C12 H123 DAO sing 119 n n # _atom_sites.entry_id 3VQ2 _atom_sites.fract_transf_matrix[1][1] 0.011653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001052 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 800 800 NAG NAG . H 4 NAG A 1 801 801 NAG NAG . I 4 NAG A 1 804 804 NAG NAG . J 5 LP4 C 1 300 300 LP4 LP4 . K 6 LP5 C 1 301 301 LP5 LP5 . L 7 DAO C 1 302 302 DAO DAO . M 8 MYR C 1 303 303 MYR MYR . N 5 LP4 D 1 300 300 LP4 LP4 . O 6 LP5 D 1 301 301 LP5 LP5 . P 7 DAO D 1 302 302 DAO DAO . Q 8 MYR D 1 303 303 MYR MYR . R 9 HOH A 1 901 2 HOH HOH . R 9 HOH A 2 902 3 HOH HOH . R 9 HOH A 3 903 4 HOH HOH . R 9 HOH A 4 904 5 HOH HOH . R 9 HOH A 5 905 6 HOH HOH . R 9 HOH A 6 906 7 HOH HOH . R 9 HOH A 7 907 8 HOH HOH . R 9 HOH A 8 908 17 HOH HOH . S 9 HOH B 1 801 1 HOH HOH . S 9 HOH B 2 802 9 HOH HOH . S 9 HOH B 3 803 10 HOH HOH . S 9 HOH B 4 804 11 HOH HOH . S 9 HOH B 5 805 12 HOH HOH . S 9 HOH B 6 806 13 HOH HOH . S 9 HOH B 7 807 14 HOH HOH . S 9 HOH B 8 808 15 HOH HOH . S 9 HOH B 9 809 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DAO . . . P 7 -14.827 20.258 -0.497 1 103.9 ? O2 DAO 302 D 1 HETATM 2 C C1 DAO . . . P 7 -14.676 21.491 -0.61 1 90.98 ? C1 DAO 302 D 1 HETATM 3 C C2 DAO . . . P 7 -15.749 22.404 -0.071 1 80.19 ? C2 DAO 302 D 1 HETATM 4 C C3 DAO . . . P 7 -15.23 23.202 1.121 1 87.1 ? C3 DAO 302 D 1 HETATM 5 C C4 DAO . . . P 7 -13.965 24.011 0.826 1 97.25 ? C4 DAO 302 D 1 HETATM 6 C C5 DAO . . . P 7 -14.255 25.446 0.384 1 93.65 ? C5 DAO 302 D 1 HETATM 7 C C6 DAO . . . P 7 -14.896 26.284 1.488 1 83.64 ? C6 DAO 302 D 1 HETATM 8 C C7 DAO . . . P 7 -14.769 27.771 1.179 1 81.39 ? C7 DAO 302 D 1 HETATM 9 C C8 DAO . . . P 7 -16.104 28.474 1.381 1 82.38 ? C8 DAO 302 D 1 HETATM 10 C C9 DAO . . . P 7 -15.939 29.967 1.64 1 72.4 ? C9 DAO 302 D 1 HETATM 11 C C10 DAO . . . P 7 -17.172 30.503 2.351 1 79.62 ? C10 DAO 302 D 1 HETATM 12 C C11 DAO . . . P 7 -17.95 31.447 1.448 1 76.13 ? C11 DAO 302 D 1 HETATM 13 C C12 DAO . . . P 7 -19.402 31.047 1.336 1 88.11 ? C12 DAO 302 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #