data_3VQ4
#
_model_server_result.job_id            piDpCrzYrityJzMA1rrTbQ 
_model_server_result.datetime_utc      '2024-11-23 00:40:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    3VQ4 
#
_exptl.entry_id    3VQ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VQ4 
_cell.length_a            60.601 
_cell.length_b            62.323 
_cell.length_c            82.087 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc4 A OE2 GLU 38 A GLU 92 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc5 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc6 D CD CD . A CD 302 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc7 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc8 B SG CYS 11 B CYS 65 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc9 B NE2 HIS 13 B HIS 67 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc10 B OE2 GLU 38 B GLU 92 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc11 B OE1 GLU 38 B GLU 92 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc12 B OD2 ASP 62 B ASP 116 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc13 H CD CD . B CD 301 1_555 L O HOH . B HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VQ4 
_atom_sites.fract_transf_matrix[1][1]    0.016501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 301 3 CD CD . 
D 2 CD A 1 302 4 CD CD . 
E 3 SO4 A 1 303 1 SO4 SO4 . 
F 4 0NX A 1 304 1 0NX PIM . 
G 4 0NX A 1 305 1 0NX PIM . 
H 2 CD B 1 301 1 CD CD . 
I 2 CD B 1 302 2 CD CD . 
J 4 0NX B 1 303 1 0NX PIM . 
K 5 HOH A 1 401 8 HOH HOH . 
K 5 HOH A 2 402 9 HOH HOH . 
K 5 HOH A 3 403 10 HOH HOH . 
K 5 HOH A 4 404 12 HOH HOH . 
K 5 HOH A 5 405 13 HOH HOH . 
K 5 HOH A 6 406 15 HOH HOH . 
K 5 HOH A 7 407 16 HOH HOH . 
K 5 HOH A 8 408 17 HOH HOH . 
K 5 HOH A 9 409 20 HOH HOH . 
K 5 HOH A 10 410 25 HOH HOH . 
K 5 HOH A 11 411 26 HOH HOH . 
K 5 HOH A 12 412 27 HOH HOH . 
K 5 HOH A 13 413 29 HOH HOH . 
K 5 HOH A 14 414 30 HOH HOH . 
K 5 HOH A 15 415 31 HOH HOH . 
K 5 HOH A 16 416 32 HOH HOH . 
K 5 HOH A 17 417 34 HOH HOH . 
K 5 HOH A 18 418 37 HOH HOH . 
K 5 HOH A 19 419 38 HOH HOH . 
K 5 HOH A 20 420 39 HOH HOH . 
K 5 HOH A 21 421 40 HOH HOH . 
K 5 HOH A 22 422 44 HOH HOH . 
K 5 HOH A 23 423 46 HOH HOH . 
K 5 HOH A 24 424 49 HOH HOH . 
K 5 HOH A 25 425 50 HOH HOH . 
K 5 HOH A 26 426 51 HOH HOH . 
K 5 HOH A 27 427 55 HOH HOH . 
K 5 HOH A 28 428 57 HOH HOH . 
K 5 HOH A 29 429 58 HOH HOH . 
K 5 HOH A 30 430 64 HOH HOH . 
K 5 HOH A 31 431 65 HOH HOH . 
K 5 HOH A 32 432 66 HOH HOH . 
K 5 HOH A 33 433 67 HOH HOH . 
K 5 HOH A 34 434 70 HOH HOH . 
K 5 HOH A 35 435 74 HOH HOH . 
K 5 HOH A 36 436 75 HOH HOH . 
K 5 HOH A 37 437 76 HOH HOH . 
K 5 HOH A 38 438 77 HOH HOH . 
K 5 HOH A 39 439 78 HOH HOH . 
K 5 HOH A 40 440 82 HOH HOH . 
L 5 HOH B 1 401 1 HOH HOH . 
L 5 HOH B 2 402 2 HOH HOH . 
L 5 HOH B 3 403 3 HOH HOH . 
L 5 HOH B 4 404 4 HOH HOH . 
L 5 HOH B 5 405 5 HOH HOH . 
L 5 HOH B 6 406 6 HOH HOH . 
L 5 HOH B 7 407 7 HOH HOH . 
L 5 HOH B 8 408 11 HOH HOH . 
L 5 HOH B 9 409 14 HOH HOH . 
L 5 HOH B 10 410 18 HOH HOH . 
L 5 HOH B 11 411 19 HOH HOH . 
L 5 HOH B 12 412 21 HOH HOH . 
L 5 HOH B 13 413 22 HOH HOH . 
L 5 HOH B 14 414 23 HOH HOH . 
L 5 HOH B 15 415 24 HOH HOH . 
L 5 HOH B 16 416 28 HOH HOH . 
L 5 HOH B 17 417 33 HOH HOH . 
L 5 HOH B 18 418 35 HOH HOH . 
L 5 HOH B 19 419 36 HOH HOH . 
L 5 HOH B 20 420 41 HOH HOH . 
L 5 HOH B 21 421 42 HOH HOH . 
L 5 HOH B 22 422 43 HOH HOH . 
L 5 HOH B 23 423 45 HOH HOH . 
L 5 HOH B 24 424 47 HOH HOH . 
L 5 HOH B 25 425 48 HOH HOH . 
L 5 HOH B 26 426 52 HOH HOH . 
L 5 HOH B 27 427 53 HOH HOH . 
L 5 HOH B 28 428 54 HOH HOH . 
L 5 HOH B 29 429 56 HOH HOH . 
L 5 HOH B 30 430 59 HOH HOH . 
L 5 HOH B 31 431 60 HOH HOH . 
L 5 HOH B 32 432 61 HOH HOH . 
L 5 HOH B 33 433 62 HOH HOH . 
L 5 HOH B 34 434 63 HOH HOH . 
L 5 HOH B 35 435 68 HOH HOH . 
L 5 HOH B 36 436 69 HOH HOH . 
L 5 HOH B 37 437 71 HOH HOH . 
L 5 HOH B 38 438 72 HOH HOH . 
L 5 HOH B 39 439 73 HOH HOH . 
L 5 HOH B 40 440 79 HOH HOH . 
L 5 HOH B 41 441 80 HOH HOH . 
L 5 HOH B 42 442 81 HOH HOH . 
L 5 HOH B 43 443 83 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               33.883 
_atom_site.Cartn_y               10.57 
_atom_site.Cartn_z               6.498 
_atom_site.occupancy             0.7 
_atom_site.B_iso_or_equiv        24.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           482 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#