data_3VQ4 # _model_server_result.job_id '_HdRvKzQJ-cxFoEqPnru0g' _model_server_result.datetime_utc '2024-11-26 14:02:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 3VQ4 # _exptl.entry_id 3VQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5-phenyl-1,2-oxazol-3-yl)methanol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQ4 _cell.length_a 60.601 _cell.length_b 62.323 _cell.length_c 82.087 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A OE2 GLU 38 A GLU 92 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 D CD CD . A CD 302 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc7 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc8 B SG CYS 11 B CYS 65 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc9 B NE2 HIS 13 B HIS 67 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 B OE2 GLU 38 B GLU 92 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc11 B OE1 GLU 38 B GLU 92 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc12 B OD2 ASP 62 B ASP 116 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc13 H CD CD . B CD 301 1_555 L O HOH . B HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id 0NX _chem_comp.mon_nstd_flag . _chem_comp.name (5-phenyl-1,2-oxazol-3-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 0NX doub 1 n y C5 C6 0NX sing 2 n y C4 C3 0NX sing 3 n y C6 C1 0NX doub 4 n y C3 C7 0NX sing 5 n n C3 C2 0NX doub 6 n y C8 C7 0NX doub 7 n y C8 C9 0NX sing 8 n y C1 C2 0NX sing 9 n y C7 O11 0NX sing 10 n y O13 C12 0NX sing 11 n n C12 C9 0NX sing 12 n n C9 N10 0NX doub 13 n y O11 N10 0NX sing 14 n y O13 H1 0NX sing 15 n n C12 H2 0NX sing 16 n n C12 H3 0NX sing 17 n n C8 H4 0NX sing 18 n n C2 H5 0NX sing 19 n n C4 H6 0NX sing 20 n n C5 H7 0NX sing 21 n n C6 H8 0NX sing 22 n n C1 H9 0NX sing 23 n n # _atom_sites.entry_id 3VQ4 _atom_sites.fract_transf_matrix[1][1] 0.016501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 3 CD CD . D 2 CD A 1 302 4 CD CD . E 3 SO4 A 1 303 1 SO4 SO4 . F 4 0NX A 1 304 1 0NX PIM . G 4 0NX A 1 305 1 0NX PIM . H 2 CD B 1 301 1 CD CD . I 2 CD B 1 302 2 CD CD . J 4 0NX B 1 303 1 0NX PIM . K 5 HOH A 1 401 8 HOH HOH . K 5 HOH A 2 402 9 HOH HOH . K 5 HOH A 3 403 10 HOH HOH . K 5 HOH A 4 404 12 HOH HOH . K 5 HOH A 5 405 13 HOH HOH . K 5 HOH A 6 406 15 HOH HOH . K 5 HOH A 7 407 16 HOH HOH . K 5 HOH A 8 408 17 HOH HOH . K 5 HOH A 9 409 20 HOH HOH . K 5 HOH A 10 410 25 HOH HOH . K 5 HOH A 11 411 26 HOH HOH . K 5 HOH A 12 412 27 HOH HOH . K 5 HOH A 13 413 29 HOH HOH . K 5 HOH A 14 414 30 HOH HOH . K 5 HOH A 15 415 31 HOH HOH . K 5 HOH A 16 416 32 HOH HOH . K 5 HOH A 17 417 34 HOH HOH . K 5 HOH A 18 418 37 HOH HOH . K 5 HOH A 19 419 38 HOH HOH . K 5 HOH A 20 420 39 HOH HOH . K 5 HOH A 21 421 40 HOH HOH . K 5 HOH A 22 422 44 HOH HOH . K 5 HOH A 23 423 46 HOH HOH . K 5 HOH A 24 424 49 HOH HOH . K 5 HOH A 25 425 50 HOH HOH . K 5 HOH A 26 426 51 HOH HOH . K 5 HOH A 27 427 55 HOH HOH . K 5 HOH A 28 428 57 HOH HOH . K 5 HOH A 29 429 58 HOH HOH . K 5 HOH A 30 430 64 HOH HOH . K 5 HOH A 31 431 65 HOH HOH . K 5 HOH A 32 432 66 HOH HOH . K 5 HOH A 33 433 67 HOH HOH . K 5 HOH A 34 434 70 HOH HOH . K 5 HOH A 35 435 74 HOH HOH . K 5 HOH A 36 436 75 HOH HOH . K 5 HOH A 37 437 76 HOH HOH . K 5 HOH A 38 438 77 HOH HOH . K 5 HOH A 39 439 78 HOH HOH . K 5 HOH A 40 440 82 HOH HOH . L 5 HOH B 1 401 1 HOH HOH . L 5 HOH B 2 402 2 HOH HOH . L 5 HOH B 3 403 3 HOH HOH . L 5 HOH B 4 404 4 HOH HOH . L 5 HOH B 5 405 5 HOH HOH . L 5 HOH B 6 406 6 HOH HOH . L 5 HOH B 7 407 7 HOH HOH . L 5 HOH B 8 408 11 HOH HOH . L 5 HOH B 9 409 14 HOH HOH . L 5 HOH B 10 410 18 HOH HOH . L 5 HOH B 11 411 19 HOH HOH . L 5 HOH B 12 412 21 HOH HOH . L 5 HOH B 13 413 22 HOH HOH . L 5 HOH B 14 414 23 HOH HOH . L 5 HOH B 15 415 24 HOH HOH . L 5 HOH B 16 416 28 HOH HOH . L 5 HOH B 17 417 33 HOH HOH . L 5 HOH B 18 418 35 HOH HOH . L 5 HOH B 19 419 36 HOH HOH . L 5 HOH B 20 420 41 HOH HOH . L 5 HOH B 21 421 42 HOH HOH . L 5 HOH B 22 422 43 HOH HOH . L 5 HOH B 23 423 45 HOH HOH . L 5 HOH B 24 424 47 HOH HOH . L 5 HOH B 25 425 48 HOH HOH . L 5 HOH B 26 426 52 HOH HOH . L 5 HOH B 27 427 53 HOH HOH . L 5 HOH B 28 428 54 HOH HOH . L 5 HOH B 29 429 56 HOH HOH . L 5 HOH B 30 430 59 HOH HOH . L 5 HOH B 31 431 60 HOH HOH . L 5 HOH B 32 432 61 HOH HOH . L 5 HOH B 33 433 62 HOH HOH . L 5 HOH B 34 434 63 HOH HOH . L 5 HOH B 35 435 68 HOH HOH . L 5 HOH B 36 436 69 HOH HOH . L 5 HOH B 37 437 71 HOH HOH . L 5 HOH B 38 438 72 HOH HOH . L 5 HOH B 39 439 73 HOH HOH . L 5 HOH B 40 440 79 HOH HOH . L 5 HOH B 41 441 80 HOH HOH . L 5 HOH B 42 442 81 HOH HOH . L 5 HOH B 43 443 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 0NX . . . F 4 12.109 30.506 21.772 1 35.39 ? O13 0NX 304 A 1 HETATM 2 C C12 0NX . . . F 4 13.191 29.518 21.835 1 41.78 ? C12 0NX 304 A 1 HETATM 3 C C9 0NX . . . F 4 14.595 29.809 21.295 1 41 ? C9 0NX 304 A 1 HETATM 4 C C8 0NX . . . F 4 14.939 29.85 19.952 1 41.08 ? C8 0NX 304 A 1 HETATM 5 N N10 0NX . . . F 4 15.729 30.011 22.028 1 45.64 ? N10 0NX 304 A 1 HETATM 6 O O11 0NX . . . F 4 16.764 30.233 21.052 1 44.32 ? O11 0NX 304 A 1 HETATM 7 C C7 0NX . . . F 4 16.288 30.13 19.795 1 39.4 ? C7 0NX 304 A 1 HETATM 8 C C3 0NX . . . F 4 17.027 30.296 18.529 1 38.97 ? C3 0NX 304 A 1 HETATM 9 C C2 0NX . . . F 4 18.282 30.952 18.514 1 34.23 ? C2 0NX 304 A 1 HETATM 10 C C4 0NX . . . F 4 16.422 29.847 17.356 1 36.41 ? C4 0NX 304 A 1 HETATM 11 C C5 0NX . . . F 4 17.096 30.025 16.128 1 38.79 ? C5 0NX 304 A 1 HETATM 12 C C6 0NX . . . F 4 18.364 30.65 16.106 1 38.81 ? C6 0NX 304 A 1 HETATM 13 C C1 0NX . . . F 4 18.945 31.122 17.308 1 38.08 ? C1 0NX 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #