data_3VQ5 # _model_server_result.job_id vWxcvoMjmcrTX9E2QpenDQ _model_server_result.datetime_utc '2024-11-14 23:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":305}' # _entry.id 3VQ5 # _exptl.entry_id 3VQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VQ5 _cell.length_a 49.13 _cell.length_b 49.13 _cell.length_c 103.05 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 10 A CYS 65 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc2 A SG CYS 10 A CYS 65 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 A NE2 HIS 12 A HIS 67 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A OE2 GLU 37 A GLU 92 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 A OD2 ASP 61 A ASP 116 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc6 D CD CD . A CD 1002 1_555 Q O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 D CD CD . A CD 1002 1_555 Q O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 B SG CYS 10 B CYS 65 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc9 B SG CYS 10 B CYS 65 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc10 B NE2 HIS 12 B HIS 67 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc11 B OE1 GLU 37 B GLU 92 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc12 B OE2 GLU 37 B GLU 92 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc13 B OD2 ASP 61 B ASP 116 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc14 K CD CD . B CD 302 1_555 R O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc15 K CD CD . B CD 302 1_555 R O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3VQ5 _atom_sites.fract_transf_matrix[1][1] 0.020354 _atom_sites.fract_transf_matrix[1][2] 0.011751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 1001 1001 CD CD . D 2 CD A 1 1002 1002 CD CD . E 3 CL A 1 1003 501 CL CL . F 4 SO4 A 1 1004 750 SO4 SO4 . G 4 SO4 A 1 1005 753 SO4 SO4 . H 4 SO4 A 1 1006 754 SO4 SO4 . I 5 MMJ A 1 1007 1 MMJ 246 . J 2 CD B 1 301 1003 CD CD . K 2 CD B 1 302 1004 CD CD . L 3 CL B 1 303 502 CL CL . M 4 SO4 B 1 304 751 SO4 SO4 . N 4 SO4 B 1 305 752 SO4 SO4 . O 4 SO4 B 1 306 755 SO4 SO4 . P 5 MMJ B 1 307 1 MMJ 246 . Q 6 HOH A 1 1101 3 HOH HOH . Q 6 HOH A 2 1102 4 HOH HOH . Q 6 HOH A 3 1103 8 HOH HOH . Q 6 HOH A 4 1104 9 HOH HOH . Q 6 HOH A 5 1105 10 HOH HOH . Q 6 HOH A 6 1106 15 HOH HOH . Q 6 HOH A 7 1107 19 HOH HOH . Q 6 HOH A 8 1108 20 HOH HOH . Q 6 HOH A 9 1109 21 HOH HOH . Q 6 HOH A 10 1110 22 HOH HOH . Q 6 HOH A 11 1111 23 HOH HOH . Q 6 HOH A 12 1112 25 HOH HOH . Q 6 HOH A 13 1113 26 HOH HOH . Q 6 HOH A 14 1114 28 HOH HOH . Q 6 HOH A 15 1115 29 HOH HOH . Q 6 HOH A 16 1116 30 HOH HOH . Q 6 HOH A 17 1117 32 HOH HOH . Q 6 HOH A 18 1118 37 HOH HOH . Q 6 HOH A 19 1119 43 HOH HOH . Q 6 HOH A 20 1120 44 HOH HOH . Q 6 HOH A 21 1121 46 HOH HOH . Q 6 HOH A 22 1122 49 HOH HOH . Q 6 HOH A 23 1123 50 HOH HOH . Q 6 HOH A 24 1124 51 HOH HOH . Q 6 HOH A 25 1125 52 HOH HOH . Q 6 HOH A 26 1126 53 HOH HOH . Q 6 HOH A 27 1127 55 HOH HOH . Q 6 HOH A 28 1128 56 HOH HOH . Q 6 HOH A 29 1129 57 HOH HOH . Q 6 HOH A 30 1130 59 HOH HOH . Q 6 HOH A 31 1131 60 HOH HOH . Q 6 HOH A 32 1132 62 HOH HOH . Q 6 HOH A 33 1133 63 HOH HOH . Q 6 HOH A 34 1134 64 HOH HOH . Q 6 HOH A 35 1135 65 HOH HOH . Q 6 HOH A 36 1136 68 HOH HOH . Q 6 HOH A 37 1137 69 HOH HOH . Q 6 HOH A 38 1138 73 HOH HOH . Q 6 HOH A 39 1139 77 HOH HOH . Q 6 HOH A 40 1140 79 HOH HOH . Q 6 HOH A 41 1141 80 HOH HOH . Q 6 HOH A 42 1142 83 HOH HOH . Q 6 HOH A 43 1143 84 HOH HOH . Q 6 HOH A 44 1144 91 HOH HOH . Q 6 HOH A 45 1145 92 HOH HOH . Q 6 HOH A 46 1146 94 HOH HOH . Q 6 HOH A 47 1147 96 HOH HOH . Q 6 HOH A 48 1148 100 HOH HOH . Q 6 HOH A 49 1149 101 HOH HOH . Q 6 HOH A 50 1150 102 HOH HOH . Q 6 HOH A 51 1151 103 HOH HOH . R 6 HOH B 1 401 1 HOH HOH . R 6 HOH B 2 402 2 HOH HOH . R 6 HOH B 3 403 5 HOH HOH . R 6 HOH B 4 404 6 HOH HOH . R 6 HOH B 5 405 7 HOH HOH . R 6 HOH B 6 406 11 HOH HOH . R 6 HOH B 7 407 12 HOH HOH . R 6 HOH B 8 408 13 HOH HOH . R 6 HOH B 9 409 14 HOH HOH . R 6 HOH B 10 410 16 HOH HOH . R 6 HOH B 11 411 17 HOH HOH . R 6 HOH B 12 412 18 HOH HOH . R 6 HOH B 13 413 24 HOH HOH . R 6 HOH B 14 414 27 HOH HOH . R 6 HOH B 15 415 31 HOH HOH . R 6 HOH B 16 416 33 HOH HOH . R 6 HOH B 17 417 34 HOH HOH . R 6 HOH B 18 418 35 HOH HOH . R 6 HOH B 19 419 36 HOH HOH . R 6 HOH B 20 420 38 HOH HOH . R 6 HOH B 21 421 39 HOH HOH . R 6 HOH B 22 422 40 HOH HOH . R 6 HOH B 23 423 41 HOH HOH . R 6 HOH B 24 424 42 HOH HOH . R 6 HOH B 25 425 45 HOH HOH . R 6 HOH B 26 426 47 HOH HOH . R 6 HOH B 27 427 48 HOH HOH . R 6 HOH B 28 428 54 HOH HOH . R 6 HOH B 29 429 58 HOH HOH . R 6 HOH B 30 430 61 HOH HOH . R 6 HOH B 31 431 66 HOH HOH . R 6 HOH B 32 432 67 HOH HOH . R 6 HOH B 33 433 70 HOH HOH . R 6 HOH B 34 434 71 HOH HOH . R 6 HOH B 35 435 72 HOH HOH . R 6 HOH B 36 436 74 HOH HOH . R 6 HOH B 37 437 75 HOH HOH . R 6 HOH B 38 438 76 HOH HOH . R 6 HOH B 39 439 78 HOH HOH . R 6 HOH B 40 440 81 HOH HOH . R 6 HOH B 41 441 82 HOH HOH . R 6 HOH B 42 442 85 HOH HOH . R 6 HOH B 43 443 86 HOH HOH . R 6 HOH B 44 444 87 HOH HOH . R 6 HOH B 45 445 88 HOH HOH . R 6 HOH B 46 446 89 HOH HOH . R 6 HOH B 47 447 90 HOH HOH . R 6 HOH B 48 448 93 HOH HOH . R 6 HOH B 49 449 95 HOH HOH . R 6 HOH B 50 450 97 HOH HOH . R 6 HOH B 51 451 98 HOH HOH . R 6 HOH B 52 452 99 HOH HOH . R 6 HOH B 53 453 104 HOH HOH . R 6 HOH B 54 454 105 HOH HOH . R 6 HOH B 55 455 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . N 4 1.303 -6.917 -7.179 1 71.79 ? S SO4 305 B 1 HETATM 2 O O1 SO4 . . . N 4 1.648 -5.511 -7.521 1 72.86 ? O1 SO4 305 B 1 HETATM 3 O O2 SO4 . . . N 4 0.429 -7.526 -8.203 1 78.52 ? O2 SO4 305 B 1 HETATM 4 O O3 SO4 . . . N 4 0.545 -6.99 -5.905 1 71.33 ? O3 SO4 305 B 1 HETATM 5 O O4 SO4 . . . N 4 2.572 -7.686 -7.097 1 78.79 ? O4 SO4 305 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #