data_3VQ6 # _model_server_result.job_id dzBEn_hzrc0v4Y2n0BiHBg _model_server_result.datetime_utc '2024-11-14 23:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3VQ6 # _exptl.entry_id 3VQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQ6 _cell.length_a 60.452 _cell.length_b 61.928 _cell.length_c 81.674 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A OE1 GLU 38 A GLU 92 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc5 A OE2 GLU 38 A GLU 92 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc7 C CD CD . A CD 301 1_555 I O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc8 D CD CD . A CD 302 1_555 I O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 B SG CYS 11 B CYS 65 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc11 B NE2 HIS 13 B HIS 67 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 B OE2 GLU 38 B GLU 92 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc13 B OE1 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc14 B OD1 ASP 62 B ASP 116 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc15 H CD CD . B CD 302 1_555 J O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VQ6 _atom_sites.fract_transf_matrix[1][1] 0.016542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 3 CD CD . D 2 CD A 1 302 4 CD CD . E 3 BCK A 1 303 1 BCK BCA . F 4 SO4 A 1 304 2 SO4 SO4 . G 2 CD B 1 301 1 CD CD . H 2 CD B 1 302 2 CD CD . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 3 HOH HOH . I 5 HOH A 4 404 6 HOH HOH . I 5 HOH A 5 405 9 HOH HOH . I 5 HOH A 6 406 11 HOH HOH . I 5 HOH A 7 407 15 HOH HOH . I 5 HOH A 8 408 18 HOH HOH . I 5 HOH A 9 409 20 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 24 HOH HOH . I 5 HOH A 12 412 25 HOH HOH . I 5 HOH A 13 413 26 HOH HOH . I 5 HOH A 14 414 30 HOH HOH . I 5 HOH A 15 415 31 HOH HOH . I 5 HOH A 16 416 33 HOH HOH . I 5 HOH A 17 417 36 HOH HOH . I 5 HOH A 18 418 39 HOH HOH . I 5 HOH A 19 419 40 HOH HOH . I 5 HOH A 20 420 41 HOH HOH . I 5 HOH A 21 421 46 HOH HOH . I 5 HOH A 22 422 47 HOH HOH . I 5 HOH A 23 423 51 HOH HOH . I 5 HOH A 24 424 53 HOH HOH . I 5 HOH A 25 425 57 HOH HOH . I 5 HOH A 26 426 58 HOH HOH . I 5 HOH A 27 427 61 HOH HOH . I 5 HOH A 28 428 63 HOH HOH . I 5 HOH A 29 429 64 HOH HOH . I 5 HOH A 30 430 67 HOH HOH . I 5 HOH A 31 431 68 HOH HOH . I 5 HOH A 32 432 69 HOH HOH . I 5 HOH A 33 433 70 HOH HOH . I 5 HOH A 34 434 71 HOH HOH . I 5 HOH A 35 435 72 HOH HOH . I 5 HOH A 36 436 73 HOH HOH . I 5 HOH A 37 437 80 HOH HOH . I 5 HOH A 38 438 82 HOH HOH . I 5 HOH A 39 439 84 HOH HOH . I 5 HOH A 40 440 77 HOH HOH . J 5 HOH B 1 401 4 HOH HOH . J 5 HOH B 2 402 5 HOH HOH . J 5 HOH B 3 403 7 HOH HOH . J 5 HOH B 4 404 8 HOH HOH . J 5 HOH B 5 405 10 HOH HOH . J 5 HOH B 6 406 12 HOH HOH . J 5 HOH B 7 407 13 HOH HOH . J 5 HOH B 8 408 14 HOH HOH . J 5 HOH B 9 409 16 HOH HOH . J 5 HOH B 10 410 17 HOH HOH . J 5 HOH B 11 411 19 HOH HOH . J 5 HOH B 12 412 22 HOH HOH . J 5 HOH B 13 413 23 HOH HOH . J 5 HOH B 14 414 27 HOH HOH . J 5 HOH B 15 415 28 HOH HOH . J 5 HOH B 16 416 29 HOH HOH . J 5 HOH B 17 417 32 HOH HOH . J 5 HOH B 18 418 34 HOH HOH . J 5 HOH B 19 419 35 HOH HOH . J 5 HOH B 20 420 37 HOH HOH . J 5 HOH B 21 421 38 HOH HOH . J 5 HOH B 22 422 42 HOH HOH . J 5 HOH B 23 423 43 HOH HOH . J 5 HOH B 24 424 44 HOH HOH . J 5 HOH B 25 425 45 HOH HOH . J 5 HOH B 26 426 48 HOH HOH . J 5 HOH B 27 427 49 HOH HOH . J 5 HOH B 28 428 50 HOH HOH . J 5 HOH B 29 429 52 HOH HOH . J 5 HOH B 30 430 54 HOH HOH . J 5 HOH B 31 431 55 HOH HOH . J 5 HOH B 32 432 56 HOH HOH . J 5 HOH B 33 433 59 HOH HOH . J 5 HOH B 34 434 60 HOH HOH . J 5 HOH B 35 435 62 HOH HOH . J 5 HOH B 36 436 65 HOH HOH . J 5 HOH B 37 437 66 HOH HOH . J 5 HOH B 38 438 74 HOH HOH . J 5 HOH B 39 439 75 HOH HOH . J 5 HOH B 40 440 76 HOH HOH . J 5 HOH B 41 441 78 HOH HOH . J 5 HOH B 42 442 79 HOH HOH . J 5 HOH B 43 443 81 HOH HOH . J 5 HOH B 44 444 83 HOH HOH . J 5 HOH B 45 445 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.208 _atom_site.Cartn_y 11.534 _atom_site.Cartn_z 9.642 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #