data_3VQ7 # _model_server_result.job_id gksY0cS-dqnFEQTz0gSo7Q _model_server_result.datetime_utc '2024-11-23 05:39:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1003}' # _entry.id 3VQ7 # _exptl.entry_id 3VQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQ7 _cell.length_a 60.284 _cell.length_b 61.658 _cell.length_c 82.017 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC G 1 SUC 2 n C FRU 2 C 2 FRU G 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 E CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A OE1 GLU 38 A GLU 92 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc5 A OE2 GLU 38 A GLU 92 1_555 E CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc6 A OD2 ASP 62 A ASP 116 1_555 E CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 D CD CD . A CD 1001 1_555 L O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 E CD CD . A CD 1002 1_555 L O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc9 E CD CD . A CD 1002 1_555 L O HOH . A HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc10 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc11 B SG CYS 11 B CYS 65 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 B NE2 HIS 13 B HIS 67 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc13 B OE1 GLU 38 B GLU 92 1_555 H CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc14 B OE2 GLU 38 B GLU 92 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc15 B OD2 ASP 62 B ASP 116 1_555 I CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc16 H CD CD . B CD 301 1_555 M O HOH . B HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc17 H CD CD . B CD 301 1_555 M O HOH . B HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc18 H CD CD . B CD 301 1_555 M O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc19 I CD CD . B CD 302 1_555 M O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc20 I CD CD . B CD 302 1_555 M O HOH . B HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 361 n n S O2 SO4 doub 362 n n S O3 SO4 sing 363 n n S O4 SO4 sing 364 n n # _atom_sites.entry_id 3VQ7 _atom_sites.fract_transf_matrix[1][1] 0.016588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CD A 1 1001 1001 CD CD . E 3 CD A 1 1002 1002 CD CD . F 4 SO4 A 1 1003 750 SO4 SO4 . G 5 SNU A 1 1004 1 SNU PYA . H 3 CD B 1 301 1003 CD CD . I 3 CD B 1 302 1004 CD CD . J 4 SO4 B 1 303 751 SO4 SO4 . K 5 SNU B 1 304 1 SNU PYA . L 6 HOH A 1 1101 1 HOH HOH . L 6 HOH A 2 1102 6 HOH HOH . L 6 HOH A 3 1103 9 HOH HOH . L 6 HOH A 4 1104 10 HOH HOH . L 6 HOH A 5 1105 11 HOH HOH . L 6 HOH A 6 1106 12 HOH HOH . L 6 HOH A 7 1107 13 HOH HOH . L 6 HOH A 8 1108 15 HOH HOH . L 6 HOH A 9 1109 16 HOH HOH . L 6 HOH A 10 1110 17 HOH HOH . L 6 HOH A 11 1111 19 HOH HOH . L 6 HOH A 12 1112 22 HOH HOH . L 6 HOH A 13 1113 24 HOH HOH . L 6 HOH A 14 1114 26 HOH HOH . L 6 HOH A 15 1115 29 HOH HOH . L 6 HOH A 16 1116 31 HOH HOH . L 6 HOH A 17 1117 35 HOH HOH . L 6 HOH A 18 1118 37 HOH HOH . L 6 HOH A 19 1119 38 HOH HOH . L 6 HOH A 20 1120 42 HOH HOH . L 6 HOH A 21 1121 44 HOH HOH . L 6 HOH A 22 1122 48 HOH HOH . L 6 HOH A 23 1123 52 HOH HOH . L 6 HOH A 24 1124 54 HOH HOH . L 6 HOH A 25 1125 56 HOH HOH . L 6 HOH A 26 1126 57 HOH HOH . L 6 HOH A 27 1127 60 HOH HOH . L 6 HOH A 28 1128 61 HOH HOH . L 6 HOH A 29 1129 64 HOH HOH . L 6 HOH A 30 1130 65 HOH HOH . L 6 HOH A 31 1131 67 HOH HOH . L 6 HOH A 32 1132 68 HOH HOH . L 6 HOH A 33 1133 69 HOH HOH . L 6 HOH A 34 1134 70 HOH HOH . L 6 HOH A 35 1135 72 HOH HOH . L 6 HOH A 36 1136 73 HOH HOH . L 6 HOH A 37 1137 75 HOH HOH . L 6 HOH A 38 1138 76 HOH HOH . L 6 HOH A 39 1139 77 HOH HOH . L 6 HOH A 40 1140 82 HOH HOH . L 6 HOH A 41 1141 83 HOH HOH . L 6 HOH A 42 1142 86 HOH HOH . L 6 HOH A 43 1143 87 HOH HOH . L 6 HOH A 44 1144 88 HOH HOH . L 6 HOH A 45 1145 89 HOH HOH . L 6 HOH A 46 1146 93 HOH HOH . L 6 HOH A 47 1147 94 HOH HOH . L 6 HOH A 48 1148 97 HOH HOH . L 6 HOH A 49 1149 99 HOH HOH . L 6 HOH A 50 1150 101 HOH HOH . L 6 HOH A 51 1151 102 HOH HOH . L 6 HOH A 52 1152 104 HOH HOH . L 6 HOH A 53 1153 106 HOH HOH . L 6 HOH A 54 1154 109 HOH HOH . L 6 HOH A 55 1155 110 HOH HOH . L 6 HOH A 56 1156 112 HOH HOH . L 6 HOH A 57 1157 114 HOH HOH . L 6 HOH A 58 1158 116 HOH HOH . L 6 HOH A 59 1159 118 HOH HOH . M 6 HOH B 1 401 2 HOH HOH . M 6 HOH B 2 402 3 HOH HOH . M 6 HOH B 3 403 4 HOH HOH . M 6 HOH B 4 404 5 HOH HOH . M 6 HOH B 5 405 7 HOH HOH . M 6 HOH B 6 406 8 HOH HOH . M 6 HOH B 7 407 14 HOH HOH . M 6 HOH B 8 408 18 HOH HOH . M 6 HOH B 9 409 20 HOH HOH . M 6 HOH B 10 410 21 HOH HOH . M 6 HOH B 11 411 23 HOH HOH . M 6 HOH B 12 412 25 HOH HOH . M 6 HOH B 13 413 27 HOH HOH . M 6 HOH B 14 414 28 HOH HOH . M 6 HOH B 15 415 30 HOH HOH . M 6 HOH B 16 416 32 HOH HOH . M 6 HOH B 17 417 33 HOH HOH . M 6 HOH B 18 418 34 HOH HOH . M 6 HOH B 19 419 36 HOH HOH . M 6 HOH B 20 420 39 HOH HOH . M 6 HOH B 21 421 40 HOH HOH . M 6 HOH B 22 422 41 HOH HOH . M 6 HOH B 23 423 43 HOH HOH . M 6 HOH B 24 424 45 HOH HOH . M 6 HOH B 25 425 46 HOH HOH . M 6 HOH B 26 426 47 HOH HOH . M 6 HOH B 27 427 49 HOH HOH . M 6 HOH B 28 428 50 HOH HOH . M 6 HOH B 29 429 51 HOH HOH . M 6 HOH B 30 430 53 HOH HOH . M 6 HOH B 31 431 55 HOH HOH . M 6 HOH B 32 432 58 HOH HOH . M 6 HOH B 33 433 59 HOH HOH . M 6 HOH B 34 434 62 HOH HOH . M 6 HOH B 35 435 63 HOH HOH . M 6 HOH B 36 436 66 HOH HOH . M 6 HOH B 37 437 71 HOH HOH . M 6 HOH B 38 438 74 HOH HOH . M 6 HOH B 39 439 78 HOH HOH . M 6 HOH B 40 440 79 HOH HOH . M 6 HOH B 41 441 80 HOH HOH . M 6 HOH B 42 442 81 HOH HOH . M 6 HOH B 43 443 84 HOH HOH . M 6 HOH B 44 444 85 HOH HOH . M 6 HOH B 45 445 90 HOH HOH . M 6 HOH B 46 446 91 HOH HOH . M 6 HOH B 47 447 92 HOH HOH . M 6 HOH B 48 448 95 HOH HOH . M 6 HOH B 49 449 96 HOH HOH . M 6 HOH B 50 450 98 HOH HOH . M 6 HOH B 51 451 100 HOH HOH . M 6 HOH B 52 452 103 HOH HOH . M 6 HOH B 53 453 105 HOH HOH . M 6 HOH B 54 454 107 HOH HOH . M 6 HOH B 55 455 108 HOH HOH . M 6 HOH B 56 456 111 HOH HOH . M 6 HOH B 57 457 113 HOH HOH . M 6 HOH B 58 458 115 HOH HOH . M 6 HOH B 59 459 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 3.667 16.375 -9.655 1 32.96 ? S SO4 1003 A 1 HETATM 2 O O1 SO4 . . . F 4 4.182 16.313 -11.039 1 33.23 ? O1 SO4 1003 A 1 HETATM 3 O O2 SO4 . . . F 4 4.593 17.106 -8.798 1 29.76 ? O2 SO4 1003 A 1 HETATM 4 O O3 SO4 . . . F 4 2.381 17.07 -9.708 1 34.15 ? O3 SO4 1003 A 1 HETATM 5 O O4 SO4 . . . F 4 3.46 15.034 -9.133 1 24.95 ? O4 SO4 1003 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #