data_3VQ8
#
_model_server_result.job_id            UL4C2c4YmiuflyxC-_G1Ew 
_model_server_result.datetime_utc      '2024-11-08 04:16:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    3VQ8 
#
_exptl.entry_id    3VQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VQ8 
_cell.length_a            49.1 
_cell.length_b            49.1 
_cell.length_c            103.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 10 A CYS 65 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc2 A SG CYS 10 A CYS 65 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc3 A NE2 HIS 12 A HIS 67 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 A OE1 GLU 37 A GLU 92 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc5 A OE2 GLU 37 A GLU 92 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc6 A OD2 ASP 61 A ASP 116 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc7 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc8 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc9 B SG CYS 10 B CYS 65 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc10 B SG CYS 10 B CYS 65 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc11 B NE2 HIS 12 B HIS 67 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc12 B OE1 GLU 37 B GLU 92 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc13 B OE2 GLU 37 B GLU 92 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc14 B OD2 ASP 61 B ASP 116 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc15 J CD CD . B CD 302 1_555 P O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc16 J CD CD . B CD 302 1_555 P O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VQ8 
_atom_sites.fract_transf_matrix[1][1]    0.020367 
_atom_sites.fract_transf_matrix[1][2]    0.011759 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 1001 1001 CD CD . 
D 2 CD A 1 1002 1002 CD CD . 
E 3 CL A 1 1003 501 CL CL . 
F 4 SO4 A 1 1004 750 SO4 SO4 . 
G 4 SO4 A 1 1005 753 SO4 SO4 . 
H 5 BCU A 1 1006 1 BCU 809 . 
I 2 CD B 1 301 1003 CD CD . 
J 2 CD B 1 302 1004 CD CD . 
K 3 CL B 1 303 502 CL CL . 
L 4 SO4 B 1 304 751 SO4 SO4 . 
M 4 SO4 B 1 305 752 SO4 SO4 . 
N 5 BCU B 1 306 1 BCU 809 . 
O 6 HOH A 1 1101 1 HOH HOH . 
O 6 HOH A 2 1102 3 HOH HOH . 
O 6 HOH A 3 1103 7 HOH HOH . 
O 6 HOH A 4 1104 8 HOH HOH . 
O 6 HOH A 5 1105 9 HOH HOH . 
O 6 HOH A 6 1106 10 HOH HOH . 
O 6 HOH A 7 1107 11 HOH HOH . 
O 6 HOH A 8 1108 13 HOH HOH . 
O 6 HOH A 9 1109 14 HOH HOH . 
O 6 HOH A 10 1110 16 HOH HOH . 
O 6 HOH A 11 1111 17 HOH HOH . 
O 6 HOH A 12 1112 24 HOH HOH . 
O 6 HOH A 13 1113 28 HOH HOH . 
O 6 HOH A 14 1114 29 HOH HOH . 
O 6 HOH A 15 1115 30 HOH HOH . 
O 6 HOH A 16 1116 36 HOH HOH . 
O 6 HOH A 17 1117 37 HOH HOH . 
O 6 HOH A 18 1118 46 HOH HOH . 
O 6 HOH A 19 1119 49 HOH HOH . 
O 6 HOH A 20 1120 50 HOH HOH . 
O 6 HOH A 21 1121 51 HOH HOH . 
O 6 HOH A 22 1122 53 HOH HOH . 
O 6 HOH A 23 1123 54 HOH HOH . 
O 6 HOH A 24 1124 56 HOH HOH . 
O 6 HOH A 25 1125 58 HOH HOH . 
O 6 HOH A 26 1126 59 HOH HOH . 
O 6 HOH A 27 1127 62 HOH HOH . 
O 6 HOH A 28 1128 63 HOH HOH . 
O 6 HOH A 29 1129 65 HOH HOH . 
O 6 HOH A 30 1130 66 HOH HOH . 
O 6 HOH A 31 1131 68 HOH HOH . 
O 6 HOH A 32 1132 70 HOH HOH . 
O 6 HOH A 33 1133 71 HOH HOH . 
O 6 HOH A 34 1134 73 HOH HOH . 
P 6 HOH B 1 401 2 HOH HOH . 
P 6 HOH B 2 402 4 HOH HOH . 
P 6 HOH B 3 403 5 HOH HOH . 
P 6 HOH B 4 404 6 HOH HOH . 
P 6 HOH B 5 405 12 HOH HOH . 
P 6 HOH B 6 406 15 HOH HOH . 
P 6 HOH B 7 407 18 HOH HOH . 
P 6 HOH B 8 408 19 HOH HOH . 
P 6 HOH B 9 409 21 HOH HOH . 
P 6 HOH B 10 410 22 HOH HOH . 
P 6 HOH B 11 411 23 HOH HOH . 
P 6 HOH B 12 412 25 HOH HOH . 
P 6 HOH B 13 413 26 HOH HOH . 
P 6 HOH B 14 414 27 HOH HOH . 
P 6 HOH B 15 415 32 HOH HOH . 
P 6 HOH B 16 416 39 HOH HOH . 
P 6 HOH B 17 417 40 HOH HOH . 
P 6 HOH B 18 418 41 HOH HOH . 
P 6 HOH B 19 419 42 HOH HOH . 
P 6 HOH B 20 420 43 HOH HOH . 
P 6 HOH B 21 421 45 HOH HOH . 
P 6 HOH B 22 422 47 HOH HOH . 
P 6 HOH B 23 423 48 HOH HOH . 
P 6 HOH B 24 424 52 HOH HOH . 
P 6 HOH B 25 425 57 HOH HOH . 
P 6 HOH B 26 426 60 HOH HOH . 
P 6 HOH B 27 427 61 HOH HOH . 
P 6 HOH B 28 428 67 HOH HOH . 
P 6 HOH B 29 429 69 HOH HOH . 
P 6 HOH B 30 430 72 HOH HOH . 
P 6 HOH B 31 431 74 HOH HOH . 
P 6 HOH B 32 432 75 HOH HOH . 
P 6 HOH B 33 433 76 HOH HOH . 
P 6 HOH B 34 434 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -28.029 
_atom_site.Cartn_y               8.025 
_atom_site.Cartn_z               11.307 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#