data_3VQ8 # _model_server_result.job_id t613qknqOXv0rjJsaeG9pg _model_server_result.datetime_utc '2024-11-08 04:11:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":306}' # _entry.id 3VQ8 # _exptl.entry_id 3VQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3,4-dihydro-2H-chromen-3-ylmethanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VQ8 _cell.length_a 49.1 _cell.length_b 49.1 _cell.length_c 103.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 10 A CYS 65 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc2 A SG CYS 10 A CYS 65 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc3 A NE2 HIS 12 A HIS 67 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A OE1 GLU 37 A GLU 92 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 A OE2 GLU 37 A GLU 92 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc6 A OD2 ASP 61 A ASP 116 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 B SG CYS 10 B CYS 65 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 B SG CYS 10 B CYS 65 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc11 B NE2 HIS 12 B HIS 67 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 B OE1 GLU 37 B GLU 92 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc13 B OE2 GLU 37 B GLU 92 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc14 B OD2 ASP 61 B ASP 116 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 J CD CD . B CD 302 1_555 P O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc16 J CD CD . B CD 302 1_555 P O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'C10 H12 O2' _chem_comp.formula_weight 164.201 _chem_comp.id BCU _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3,4-dihydro-2H-chromen-3-ylmethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3R)-3,4-dihydro-2H-1-benzopyran-3-ylmethanol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 BCU doub 70 n y C9 C8 BCU sing 71 n y C10 C5 BCU sing 72 n y C8 C7 BCU doub 73 n y C5 O4 BCU sing 74 n n C5 C6 BCU doub 75 n y O4 C3 BCU sing 76 n n C7 C6 BCU sing 77 n y C6 C1 BCU sing 78 n n C3 C2 BCU sing 79 n n C1 C2 BCU sing 80 n n C2 C11 BCU sing 81 n n C11 O12 BCU sing 82 n n O12 H1 BCU sing 83 n n C11 H2 BCU sing 84 n n C11 H3 BCU sing 85 n n C2 H4 BCU sing 86 n n C3 H5 BCU sing 87 n n C3 H6 BCU sing 88 n n C10 H7 BCU sing 89 n n C9 H8 BCU sing 90 n n C8 H9 BCU sing 91 n n C7 H10 BCU sing 92 n n C1 H11 BCU sing 93 n n C1 H12 BCU sing 94 n n # _atom_sites.entry_id 3VQ8 _atom_sites.fract_transf_matrix[1][1] 0.020367 _atom_sites.fract_transf_matrix[1][2] 0.011759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 1001 1001 CD CD . D 2 CD A 1 1002 1002 CD CD . E 3 CL A 1 1003 501 CL CL . F 4 SO4 A 1 1004 750 SO4 SO4 . G 4 SO4 A 1 1005 753 SO4 SO4 . H 5 BCU A 1 1006 1 BCU 809 . I 2 CD B 1 301 1003 CD CD . J 2 CD B 1 302 1004 CD CD . K 3 CL B 1 303 502 CL CL . L 4 SO4 B 1 304 751 SO4 SO4 . M 4 SO4 B 1 305 752 SO4 SO4 . N 5 BCU B 1 306 1 BCU 809 . O 6 HOH A 1 1101 1 HOH HOH . O 6 HOH A 2 1102 3 HOH HOH . O 6 HOH A 3 1103 7 HOH HOH . O 6 HOH A 4 1104 8 HOH HOH . O 6 HOH A 5 1105 9 HOH HOH . O 6 HOH A 6 1106 10 HOH HOH . O 6 HOH A 7 1107 11 HOH HOH . O 6 HOH A 8 1108 13 HOH HOH . O 6 HOH A 9 1109 14 HOH HOH . O 6 HOH A 10 1110 16 HOH HOH . O 6 HOH A 11 1111 17 HOH HOH . O 6 HOH A 12 1112 24 HOH HOH . O 6 HOH A 13 1113 28 HOH HOH . O 6 HOH A 14 1114 29 HOH HOH . O 6 HOH A 15 1115 30 HOH HOH . O 6 HOH A 16 1116 36 HOH HOH . O 6 HOH A 17 1117 37 HOH HOH . O 6 HOH A 18 1118 46 HOH HOH . O 6 HOH A 19 1119 49 HOH HOH . O 6 HOH A 20 1120 50 HOH HOH . O 6 HOH A 21 1121 51 HOH HOH . O 6 HOH A 22 1122 53 HOH HOH . O 6 HOH A 23 1123 54 HOH HOH . O 6 HOH A 24 1124 56 HOH HOH . O 6 HOH A 25 1125 58 HOH HOH . O 6 HOH A 26 1126 59 HOH HOH . O 6 HOH A 27 1127 62 HOH HOH . O 6 HOH A 28 1128 63 HOH HOH . O 6 HOH A 29 1129 65 HOH HOH . O 6 HOH A 30 1130 66 HOH HOH . O 6 HOH A 31 1131 68 HOH HOH . O 6 HOH A 32 1132 70 HOH HOH . O 6 HOH A 33 1133 71 HOH HOH . O 6 HOH A 34 1134 73 HOH HOH . P 6 HOH B 1 401 2 HOH HOH . P 6 HOH B 2 402 4 HOH HOH . P 6 HOH B 3 403 5 HOH HOH . P 6 HOH B 4 404 6 HOH HOH . P 6 HOH B 5 405 12 HOH HOH . P 6 HOH B 6 406 15 HOH HOH . P 6 HOH B 7 407 18 HOH HOH . P 6 HOH B 8 408 19 HOH HOH . P 6 HOH B 9 409 21 HOH HOH . P 6 HOH B 10 410 22 HOH HOH . P 6 HOH B 11 411 23 HOH HOH . P 6 HOH B 12 412 25 HOH HOH . P 6 HOH B 13 413 26 HOH HOH . P 6 HOH B 14 414 27 HOH HOH . P 6 HOH B 15 415 32 HOH HOH . P 6 HOH B 16 416 39 HOH HOH . P 6 HOH B 17 417 40 HOH HOH . P 6 HOH B 18 418 41 HOH HOH . P 6 HOH B 19 419 42 HOH HOH . P 6 HOH B 20 420 43 HOH HOH . P 6 HOH B 21 421 45 HOH HOH . P 6 HOH B 22 422 47 HOH HOH . P 6 HOH B 23 423 48 HOH HOH . P 6 HOH B 24 424 52 HOH HOH . P 6 HOH B 25 425 57 HOH HOH . P 6 HOH B 26 426 60 HOH HOH . P 6 HOH B 27 427 61 HOH HOH . P 6 HOH B 28 428 67 HOH HOH . P 6 HOH B 29 429 69 HOH HOH . P 6 HOH B 30 430 72 HOH HOH . P 6 HOH B 31 431 74 HOH HOH . P 6 HOH B 32 432 75 HOH HOH . P 6 HOH B 33 433 76 HOH HOH . P 6 HOH B 34 434 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 BCU . . . N 5 -21.11 8.589 -16.571 1 31.39 ? O12 BCU 306 B 1 HETATM 2 C C11 BCU . . . N 5 -19.873 8.437 -15.799 1 29.68 ? C11 BCU 306 B 1 HETATM 3 C C2 BCU . . . N 5 -20.454 8.689 -14.422 1 28.58 ? C2 BCU 306 B 1 HETATM 4 C C3 BCU . . . N 5 -19.423 9.151 -13.427 1 26.06 ? C3 BCU 306 B 1 HETATM 5 O O4 BCU . . . N 5 -18.563 8.047 -13.007 1 27 ? O4 BCU 306 B 1 HETATM 6 C C5 BCU . . . N 5 -18.972 6.74 -12.865 1 28.78 ? C5 BCU 306 B 1 HETATM 7 C C10 BCU . . . N 5 -18.159 5.793 -12.247 1 26.16 ? C10 BCU 306 B 1 HETATM 8 C C9 BCU . . . N 5 -18.606 4.48 -12.123 1 24.67 ? C9 BCU 306 B 1 HETATM 9 C C8 BCU . . . N 5 -19.863 4.083 -12.621 1 25.11 ? C8 BCU 306 B 1 HETATM 10 C C7 BCU . . . N 5 -20.707 4.995 -13.266 1 27.77 ? C7 BCU 306 B 1 HETATM 11 C C6 BCU . . . N 5 -20.283 6.332 -13.422 1 28.88 ? C6 BCU 306 B 1 HETATM 12 C C1 BCU . . . N 5 -21.174 7.386 -14.045 1 28.24 ? C1 BCU 306 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #