data_3VQ8
#
_model_server_result.job_id            -3NmYtqWGgwEl4MJX-wEFw 
_model_server_result.datetime_utc      '2024-11-26 22:06:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":306}' 
#
_entry.id    3VQ8 
#
_exptl.entry_id    3VQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-3,4-dihydro-2H-chromen-3-ylmethanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VQ8 
_cell.length_a            49.1 
_cell.length_b            49.1 
_cell.length_c            103.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 10 A CYS 65 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc2 A SG CYS 10 A CYS 65 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc3 A NE2 HIS 12 A HIS 67 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 A OE1 GLU 37 A GLU 92 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc5 A OE2 GLU 37 A GLU 92 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc6 A OD2 ASP 61 A ASP 116 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc7 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc8 D CD CD . A CD 1002 1_555 O O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc9 B SG CYS 10 B CYS 65 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc10 B SG CYS 10 B CYS 65 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc11 B NE2 HIS 12 B HIS 67 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc12 B OE1 GLU 37 B GLU 92 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc13 B OE2 GLU 37 B GLU 92 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc14 B OD2 ASP 61 B ASP 116 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc15 J CD CD . B CD 302 1_555 P O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc16 J CD CD . B CD 302 1_555 P O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'C10 H12 O2' 
_chem_comp.formula_weight    164.201 
_chem_comp.id                BCU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-3,4-dihydro-2H-chromen-3-ylmethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3R)-3,4-dihydro-2H-1-benzopyran-3-ylmethanol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C10 BCU doub 70 n y 
C9 C8 BCU sing 71 n y 
C10 C5 BCU sing 72 n y 
C8 C7 BCU doub 73 n y 
C5 O4 BCU sing 74 n n 
C5 C6 BCU doub 75 n y 
O4 C3 BCU sing 76 n n 
C7 C6 BCU sing 77 n y 
C6 C1 BCU sing 78 n n 
C3 C2 BCU sing 79 n n 
C1 C2 BCU sing 80 n n 
C2 C11 BCU sing 81 n n 
C11 O12 BCU sing 82 n n 
O12 H1 BCU sing 83 n n 
C11 H2 BCU sing 84 n n 
C11 H3 BCU sing 85 n n 
C2 H4 BCU sing 86 n n 
C3 H5 BCU sing 87 n n 
C3 H6 BCU sing 88 n n 
C10 H7 BCU sing 89 n n 
C9 H8 BCU sing 90 n n 
C8 H9 BCU sing 91 n n 
C7 H10 BCU sing 92 n n 
C1 H11 BCU sing 93 n n 
C1 H12 BCU sing 94 n n 
#
_atom_sites.entry_id                     3VQ8 
_atom_sites.fract_transf_matrix[1][1]    0.020367 
_atom_sites.fract_transf_matrix[1][2]    0.011759 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 1001 1001 CD CD . 
D 2 CD A 1 1002 1002 CD CD . 
E 3 CL A 1 1003 501 CL CL . 
F 4 SO4 A 1 1004 750 SO4 SO4 . 
G 4 SO4 A 1 1005 753 SO4 SO4 . 
H 5 BCU A 1 1006 1 BCU 809 . 
I 2 CD B 1 301 1003 CD CD . 
J 2 CD B 1 302 1004 CD CD . 
K 3 CL B 1 303 502 CL CL . 
L 4 SO4 B 1 304 751 SO4 SO4 . 
M 4 SO4 B 1 305 752 SO4 SO4 . 
N 5 BCU B 1 306 1 BCU 809 . 
O 6 HOH A 1 1101 1 HOH HOH . 
O 6 HOH A 2 1102 3 HOH HOH . 
O 6 HOH A 3 1103 7 HOH HOH . 
O 6 HOH A 4 1104 8 HOH HOH . 
O 6 HOH A 5 1105 9 HOH HOH . 
O 6 HOH A 6 1106 10 HOH HOH . 
O 6 HOH A 7 1107 11 HOH HOH . 
O 6 HOH A 8 1108 13 HOH HOH . 
O 6 HOH A 9 1109 14 HOH HOH . 
O 6 HOH A 10 1110 16 HOH HOH . 
O 6 HOH A 11 1111 17 HOH HOH . 
O 6 HOH A 12 1112 24 HOH HOH . 
O 6 HOH A 13 1113 28 HOH HOH . 
O 6 HOH A 14 1114 29 HOH HOH . 
O 6 HOH A 15 1115 30 HOH HOH . 
O 6 HOH A 16 1116 36 HOH HOH . 
O 6 HOH A 17 1117 37 HOH HOH . 
O 6 HOH A 18 1118 46 HOH HOH . 
O 6 HOH A 19 1119 49 HOH HOH . 
O 6 HOH A 20 1120 50 HOH HOH . 
O 6 HOH A 21 1121 51 HOH HOH . 
O 6 HOH A 22 1122 53 HOH HOH . 
O 6 HOH A 23 1123 54 HOH HOH . 
O 6 HOH A 24 1124 56 HOH HOH . 
O 6 HOH A 25 1125 58 HOH HOH . 
O 6 HOH A 26 1126 59 HOH HOH . 
O 6 HOH A 27 1127 62 HOH HOH . 
O 6 HOH A 28 1128 63 HOH HOH . 
O 6 HOH A 29 1129 65 HOH HOH . 
O 6 HOH A 30 1130 66 HOH HOH . 
O 6 HOH A 31 1131 68 HOH HOH . 
O 6 HOH A 32 1132 70 HOH HOH . 
O 6 HOH A 33 1133 71 HOH HOH . 
O 6 HOH A 34 1134 73 HOH HOH . 
P 6 HOH B 1 401 2 HOH HOH . 
P 6 HOH B 2 402 4 HOH HOH . 
P 6 HOH B 3 403 5 HOH HOH . 
P 6 HOH B 4 404 6 HOH HOH . 
P 6 HOH B 5 405 12 HOH HOH . 
P 6 HOH B 6 406 15 HOH HOH . 
P 6 HOH B 7 407 18 HOH HOH . 
P 6 HOH B 8 408 19 HOH HOH . 
P 6 HOH B 9 409 21 HOH HOH . 
P 6 HOH B 10 410 22 HOH HOH . 
P 6 HOH B 11 411 23 HOH HOH . 
P 6 HOH B 12 412 25 HOH HOH . 
P 6 HOH B 13 413 26 HOH HOH . 
P 6 HOH B 14 414 27 HOH HOH . 
P 6 HOH B 15 415 32 HOH HOH . 
P 6 HOH B 16 416 39 HOH HOH . 
P 6 HOH B 17 417 40 HOH HOH . 
P 6 HOH B 18 418 41 HOH HOH . 
P 6 HOH B 19 419 42 HOH HOH . 
P 6 HOH B 20 420 43 HOH HOH . 
P 6 HOH B 21 421 45 HOH HOH . 
P 6 HOH B 22 422 47 HOH HOH . 
P 6 HOH B 23 423 48 HOH HOH . 
P 6 HOH B 24 424 52 HOH HOH . 
P 6 HOH B 25 425 57 HOH HOH . 
P 6 HOH B 26 426 60 HOH HOH . 
P 6 HOH B 27 427 61 HOH HOH . 
P 6 HOH B 28 428 67 HOH HOH . 
P 6 HOH B 29 429 69 HOH HOH . 
P 6 HOH B 30 430 72 HOH HOH . 
P 6 HOH B 31 431 74 HOH HOH . 
P 6 HOH B 32 432 75 HOH HOH . 
P 6 HOH B 33 433 76 HOH HOH . 
P 6 HOH B 34 434 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 BCU . . . N 5 -21.11 8.589 -16.571 1 31.39 ? O12 BCU 306 B 1 
HETATM 2 C C11 BCU . . . N 5 -19.873 8.437 -15.799 1 29.68 ? C11 BCU 306 B 1 
HETATM 3 C C2 BCU . . . N 5 -20.454 8.689 -14.422 1 28.58 ? C2 BCU 306 B 1 
HETATM 4 C C3 BCU . . . N 5 -19.423 9.151 -13.427 1 26.06 ? C3 BCU 306 B 1 
HETATM 5 O O4 BCU . . . N 5 -18.563 8.047 -13.007 1 27 ? O4 BCU 306 B 1 
HETATM 6 C C5 BCU . . . N 5 -18.972 6.74 -12.865 1 28.78 ? C5 BCU 306 B 1 
HETATM 7 C C10 BCU . . . N 5 -18.159 5.793 -12.247 1 26.16 ? C10 BCU 306 B 1 
HETATM 8 C C9 BCU . . . N 5 -18.606 4.48 -12.123 1 24.67 ? C9 BCU 306 B 1 
HETATM 9 C C8 BCU . . . N 5 -19.863 4.083 -12.621 1 25.11 ? C8 BCU 306 B 1 
HETATM 10 C C7 BCU . . . N 5 -20.707 4.995 -13.266 1 27.77 ? C7 BCU 306 B 1 
HETATM 11 C C6 BCU . . . N 5 -20.283 6.332 -13.422 1 28.88 ? C6 BCU 306 B 1 
HETATM 12 C C1 BCU . . . N 5 -21.174 7.386 -14.045 1 28.24 ? C1 BCU 306 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#