data_3VQC # _model_server_result.job_id BGkYou4MdR80j2seH53vOg _model_server_result.datetime_utc '2024-11-13 08:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 3VQC # _exptl.entry_id 3VQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQC _cell.length_a 60.11 _cell.length_b 59.92 _cell.length_c 81.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OE2 GLU 38 A GLU 92 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 A OE1 GLU 38 A GLU 92 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc7 C CD CD . A CD 301 1_555 I O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc8 D CD CD . A CD 302 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 B SG CYS 11 B CYS 65 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc10 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc11 B NE2 HIS 13 B HIS 67 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 B OE2 GLU 38 B GLU 92 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc13 B OE1 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc14 B OE2 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc15 B OD2 ASP 62 B ASP 116 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc16 G CD CD . B CD 301 1_555 J O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc17 G CD CD . B CD 301 1_555 J O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc18 H CD CD . B CD 302 1_555 J O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc19 H CD CD . B CD 302 1_555 J O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VQC _atom_sites.fract_transf_matrix[1][1] 0.016636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 3 CD CD . D 2 CD A 1 302 4 CD CD . E 3 SO4 A 1 303 2 SO4 SO4 . F 4 MPK A 1 304 1 MPK LIG . G 2 CD B 1 301 1 CD CD . H 2 CD B 1 302 2 CD CD . I 5 HOH A 1 401 2 HOH HOH . I 5 HOH A 2 402 3 HOH HOH . I 5 HOH A 3 403 6 HOH HOH . I 5 HOH A 4 404 8 HOH HOH . I 5 HOH A 5 405 13 HOH HOH . I 5 HOH A 6 406 14 HOH HOH . I 5 HOH A 7 407 15 HOH HOH . I 5 HOH A 8 408 16 HOH HOH . I 5 HOH A 9 409 18 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 23 HOH HOH . I 5 HOH A 12 412 24 HOH HOH . I 5 HOH A 13 413 25 HOH HOH . I 5 HOH A 14 414 28 HOH HOH . J 5 HOH B 1 401 1 HOH HOH . J 5 HOH B 2 402 4 HOH HOH . J 5 HOH B 3 403 7 HOH HOH . J 5 HOH B 4 404 9 HOH HOH . J 5 HOH B 5 405 10 HOH HOH . J 5 HOH B 6 406 12 HOH HOH . J 5 HOH B 7 407 17 HOH HOH . J 5 HOH B 8 408 20 HOH HOH . J 5 HOH B 9 409 30 HOH HOH . J 5 HOH B 10 410 32 HOH HOH . J 5 HOH B 11 411 33 HOH HOH . J 5 HOH B 12 412 34 HOH HOH . J 5 HOH B 13 413 35 HOH HOH . J 5 HOH B 14 414 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.726 _atom_site.Cartn_y 27.05 _atom_site.Cartn_z 13.136 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #