data_3VQC # _model_server_result.job_id TypsHCmHg-NwSShlmkw84A _model_server_result.datetime_utc '2024-11-26 22:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 3VQC # _exptl.entry_id 3VQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.211 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5-methyl-3-phenyl-1,2-oxazol-4-yl)methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQC _cell.length_a 60.11 _cell.length_b 59.92 _cell.length_c 81.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OE2 GLU 38 A GLU 92 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 A OE1 GLU 38 A GLU 92 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc7 C CD CD . A CD 301 1_555 I O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc8 D CD CD . A CD 302 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 B SG CYS 11 B CYS 65 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc10 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc11 B NE2 HIS 13 B HIS 67 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 B OE2 GLU 38 B GLU 92 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc13 B OE1 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc14 B OE2 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc15 B OD2 ASP 62 B ASP 116 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc16 G CD CD . B CD 301 1_555 J O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc17 G CD CD . B CD 301 1_555 J O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc18 H CD CD . B CD 302 1_555 J O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc19 H CD CD . B CD 302 1_555 J O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C11 H11 N O2' _chem_comp.formula_weight 189.211 _chem_comp.id MPK _chem_comp.mon_nstd_flag . _chem_comp.name (5-methyl-3-phenyl-1,2-oxazol-4-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPK sing 237 n n C4 C3 MPK sing 238 n n C4 O5 MPK sing 239 n n C2 C3 MPK doub 240 n y C2 O8 MPK sing 241 n y C10 C11 MPK doub 242 n y C10 C9 MPK sing 243 n y C3 C6 MPK sing 244 n y O8 N7 MPK sing 245 n y C11 C12 MPK sing 246 n y C6 N7 MPK doub 247 n y C6 C9 MPK sing 248 n n C9 C14 MPK doub 249 n y C12 C13 MPK doub 250 n y C14 C13 MPK sing 251 n y C1 H1 MPK sing 252 n n C1 H2 MPK sing 253 n n C1 H3 MPK sing 254 n n C4 H4 MPK sing 255 n n C4 H5 MPK sing 256 n n O5 H6 MPK sing 257 n n C10 H7 MPK sing 258 n n C11 H8 MPK sing 259 n n C12 H9 MPK sing 260 n n C13 H10 MPK sing 261 n n C14 H11 MPK sing 262 n n # _atom_sites.entry_id 3VQC _atom_sites.fract_transf_matrix[1][1] 0.016636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 3 CD CD . D 2 CD A 1 302 4 CD CD . E 3 SO4 A 1 303 2 SO4 SO4 . F 4 MPK A 1 304 1 MPK LIG . G 2 CD B 1 301 1 CD CD . H 2 CD B 1 302 2 CD CD . I 5 HOH A 1 401 2 HOH HOH . I 5 HOH A 2 402 3 HOH HOH . I 5 HOH A 3 403 6 HOH HOH . I 5 HOH A 4 404 8 HOH HOH . I 5 HOH A 5 405 13 HOH HOH . I 5 HOH A 6 406 14 HOH HOH . I 5 HOH A 7 407 15 HOH HOH . I 5 HOH A 8 408 16 HOH HOH . I 5 HOH A 9 409 18 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 23 HOH HOH . I 5 HOH A 12 412 24 HOH HOH . I 5 HOH A 13 413 25 HOH HOH . I 5 HOH A 14 414 28 HOH HOH . J 5 HOH B 1 401 1 HOH HOH . J 5 HOH B 2 402 4 HOH HOH . J 5 HOH B 3 403 7 HOH HOH . J 5 HOH B 4 404 9 HOH HOH . J 5 HOH B 5 405 10 HOH HOH . J 5 HOH B 6 406 12 HOH HOH . J 5 HOH B 7 407 17 HOH HOH . J 5 HOH B 8 408 20 HOH HOH . J 5 HOH B 9 409 30 HOH HOH . J 5 HOH B 10 410 32 HOH HOH . J 5 HOH B 11 411 33 HOH HOH . J 5 HOH B 12 412 34 HOH HOH . J 5 HOH B 13 413 35 HOH HOH . J 5 HOH B 14 414 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPK . . . F 4 3.135 41.82 28.699 0.66 61.69 ? C1 MPK 304 A 1 HETATM 2 C C2 MPK . . . F 4 4.275 40.952 29.152 0.66 61.54 ? C2 MPK 304 A 1 HETATM 3 C C3 MPK . . . F 4 4.3 39.571 29.324 0.66 64.77 ? C3 MPK 304 A 1 HETATM 4 C C4 MPK . . . F 4 3.143 38.646 29.078 0.66 62.23 ? C4 MPK 304 A 1 HETATM 5 O O5 MPK . . . F 4 3.1 37.423 29.779 0.66 65.65 ? O5 MPK 304 A 1 HETATM 6 C C6 MPK . . . F 4 5.643 39.17 29.77 0.66 68.67 ? C6 MPK 304 A 1 HETATM 7 N N7 MPK . . . F 4 6.359 40.318 29.865 0.66 63.85 ? N7 MPK 304 A 1 HETATM 8 O O8 MPK . . . F 4 5.501 41.377 29.479 0.66 62.22 ? O8 MPK 304 A 1 HETATM 9 C C9 MPK . . . F 4 6.151 37.758 30.101 0.66 69.77 ? C9 MPK 304 A 1 HETATM 10 C C10 MPK . . . F 4 5.83 36.62 29.256 0.66 71.94 ? C10 MPK 304 A 1 HETATM 11 C C11 MPK . . . F 4 6.279 35.366 29.561 0.66 66.63 ? C11 MPK 304 A 1 HETATM 12 C C12 MPK . . . F 4 7.051 35.174 30.674 0.66 65.86 ? C12 MPK 304 A 1 HETATM 13 C C13 MPK . . . F 4 7.38 36.274 31.51 0.66 61.2 ? C13 MPK 304 A 1 HETATM 14 C C14 MPK . . . F 4 6.917 37.542 31.203 0.66 65.34 ? C14 MPK 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #