data_3VQD # _model_server_result.job_id 5f0JbAVL0oecfIvhkuQ78g _model_server_result.datetime_utc '2024-11-26 22:57:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 3VQD # _exptl.entry_id 3VQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.194 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-methyl-3-phenyl-1,2-oxazole-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQD _cell.length_a 59.857 _cell.length_b 60.343 _cell.length_c 81.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A OE2 GLU 38 A GLU 92 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc5 A OD2 ASP 62 A ASP 116 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 C CD CD . A CD 301 1_555 J O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 D CD CD . A CD 302 1_555 J O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc8 B SG CYS 11 B CYS 65 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc9 B SG CYS 11 B CYS 65 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 B OE2 GLU 38 B GLU 92 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B OE1 GLU 38 B GLU 92 1_555 H CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 B OD2 ASP 62 B ASP 116 1_555 G CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc13 G CD CD . B CD 301 1_555 K O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc14 G CD CD . B CD 301 1_555 K O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc15 H CD CD . B CD 302 1_555 K O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc16 H CD CD . B CD 302 1_555 K O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C11 H9 N O3' _chem_comp.formula_weight 203.194 _chem_comp.id MOK _chem_comp.mon_nstd_flag . _chem_comp.name '5-methyl-3-phenyl-1,2-oxazole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C4 MOK doub 237 n n C4 O5 MOK sing 238 n n C4 C3 MOK sing 239 n n C12 C11 MOK doub 240 n y C12 C13 MOK sing 241 n y C11 C10 MOK sing 242 n y C1 C2 MOK sing 243 n n C3 C2 MOK doub 244 n y C3 C7 MOK sing 245 n y C13 C14 MOK doub 246 n y C2 O9 MOK sing 247 n y C10 C7 MOK sing 248 n n C10 C15 MOK doub 249 n y C7 N8 MOK doub 250 n y O9 N8 MOK sing 251 n y C14 C15 MOK sing 252 n y C1 H1 MOK sing 253 n n C1 H2 MOK sing 254 n n C1 H3 MOK sing 255 n n O5 H4 MOK sing 256 n n C11 H5 MOK sing 257 n n C12 H6 MOK sing 258 n n C13 H7 MOK sing 259 n n C14 H8 MOK sing 260 n n C15 H9 MOK sing 261 n n # _atom_sites.entry_id 3VQD _atom_sites.fract_transf_matrix[1][1] 0.016707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 3 CD CD . D 2 CD A 1 302 4 CD CD . E 3 SO4 A 1 303 1 SO4 SO4 . F 4 MOK A 1 304 1 MOK LIG . G 2 CD B 1 301 1 CD CD . H 2 CD B 1 302 2 CD CD . I 3 SO4 B 1 303 2 SO4 SO4 . J 5 HOH A 1 401 2 HOH HOH . J 5 HOH A 2 402 4 HOH HOH . J 5 HOH A 3 403 6 HOH HOH . J 5 HOH A 4 404 7 HOH HOH . J 5 HOH A 5 405 9 HOH HOH . J 5 HOH A 6 406 10 HOH HOH . J 5 HOH A 7 407 11 HOH HOH . J 5 HOH A 8 408 12 HOH HOH . J 5 HOH A 9 409 14 HOH HOH . J 5 HOH A 10 410 15 HOH HOH . J 5 HOH A 11 411 16 HOH HOH . J 5 HOH A 12 412 17 HOH HOH . J 5 HOH A 13 413 18 HOH HOH . J 5 HOH A 14 414 19 HOH HOH . J 5 HOH A 15 415 20 HOH HOH . J 5 HOH A 16 416 21 HOH HOH . J 5 HOH A 17 417 25 HOH HOH . J 5 HOH A 18 418 30 HOH HOH . J 5 HOH A 19 419 32 HOH HOH . J 5 HOH A 20 420 33 HOH HOH . J 5 HOH A 21 421 39 HOH HOH . J 5 HOH A 22 422 44 HOH HOH . J 5 HOH A 23 423 46 HOH HOH . J 5 HOH A 24 424 47 HOH HOH . J 5 HOH A 25 425 49 HOH HOH . J 5 HOH A 26 426 50 HOH HOH . J 5 HOH A 27 427 52 HOH HOH . J 5 HOH A 28 428 53 HOH HOH . J 5 HOH A 29 429 54 HOH HOH . J 5 HOH A 30 430 58 HOH HOH . J 5 HOH A 31 431 59 HOH HOH . K 5 HOH B 1 401 1 HOH HOH . K 5 HOH B 2 402 3 HOH HOH . K 5 HOH B 3 403 5 HOH HOH . K 5 HOH B 4 404 8 HOH HOH . K 5 HOH B 5 405 13 HOH HOH . K 5 HOH B 6 406 22 HOH HOH . K 5 HOH B 7 407 23 HOH HOH . K 5 HOH B 8 408 24 HOH HOH . K 5 HOH B 9 409 26 HOH HOH . K 5 HOH B 10 410 27 HOH HOH . K 5 HOH B 11 411 28 HOH HOH . K 5 HOH B 12 412 29 HOH HOH . K 5 HOH B 13 413 31 HOH HOH . K 5 HOH B 14 414 34 HOH HOH . K 5 HOH B 15 415 35 HOH HOH . K 5 HOH B 16 416 36 HOH HOH . K 5 HOH B 17 417 37 HOH HOH . K 5 HOH B 18 418 38 HOH HOH . K 5 HOH B 19 419 40 HOH HOH . K 5 HOH B 20 420 41 HOH HOH . K 5 HOH B 21 421 42 HOH HOH . K 5 HOH B 22 422 43 HOH HOH . K 5 HOH B 23 423 45 HOH HOH . K 5 HOH B 24 424 48 HOH HOH . K 5 HOH B 25 425 51 HOH HOH . K 5 HOH B 26 426 55 HOH HOH . K 5 HOH B 27 427 56 HOH HOH . K 5 HOH B 28 428 57 HOH HOH . K 5 HOH B 29 429 60 HOH HOH . K 5 HOH B 30 430 61 HOH HOH . K 5 HOH B 31 431 62 HOH HOH . K 5 HOH B 32 432 63 HOH HOH . K 5 HOH B 33 433 64 HOH HOH . K 5 HOH B 34 434 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MOK . . . F 4 2.934 20.478 9.464 1 59.78 ? C1 MOK 304 A 1 HETATM 2 C C2 MOK . . . F 4 4.2 21.158 9.895 1 57.31 ? C2 MOK 304 A 1 HETATM 3 C C3 MOK . . . F 4 5.503 20.699 9.53 1 50.43 ? C3 MOK 304 A 1 HETATM 4 C C4 MOK . . . F 4 5.751 19.498 8.698 1 46.87 ? C4 MOK 304 A 1 HETATM 5 O O5 MOK . . . F 4 6.531 18.592 9.126 1 36.33 -1 O5 MOK 304 A 1 HETATM 6 O O6 MOK . . . F 4 5.13 19.404 7.61 1 51.53 ? O6 MOK 304 A 1 HETATM 7 C C7 MOK . . . F 4 6.42 21.617 10.197 1 45.91 ? C7 MOK 304 A 1 HETATM 8 N N8 MOK . . . F 4 5.651 22.526 10.823 1 48.17 ? N8 MOK 304 A 1 HETATM 9 O O9 MOK . . . F 4 4.369 22.227 10.641 1 55.65 ? O9 MOK 304 A 1 HETATM 10 C C10 MOK . . . F 4 7.892 21.66 10.101 1 43.06 ? C10 MOK 304 A 1 HETATM 11 C C11 MOK . . . F 4 8.492 21.1 8.967 1 45.52 ? C11 MOK 304 A 1 HETATM 12 C C12 MOK . . . F 4 9.875 21.158 8.783 1 46.29 ? C12 MOK 304 A 1 HETATM 13 C C13 MOK . . . F 4 10.596 21.837 9.759 1 38.79 ? C13 MOK 304 A 1 HETATM 14 C C14 MOK . . . F 4 9.995 22.42 10.886 1 41.78 ? C14 MOK 304 A 1 HETATM 15 C C15 MOK . . . F 4 8.624 22.373 11.06 1 41.13 ? C15 MOK 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #