data_3VQQ # _model_server_result.job_id hecBU1TMCZ6cQE5Wj8o-sw _model_server_result.datetime_utc '2024-11-23 05:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 3VQQ # _exptl.entry_id 3VQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VQQ _cell.length_a 60.399 _cell.length_b 61.681 _cell.length_c 81.893 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C FRU 2 C 2 FRU D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing metalc ? metalc1 A SG CYS 11 A CYS 65 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A SG CYS 11 A CYS 65 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc3 A NE2 HIS 13 A HIS 67 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A OE1 GLU 38 A GLU 92 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 A OE2 GLU 38 A GLU 92 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 A OD2 ASP 62 A ASP 116 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 D CD CD . A CD 301 1_555 L O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 E CD CD . A CD 302 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc9 E CD CD . A CD 302 1_555 L O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 B SG CYS 11 B CYS 65 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc11 B SG CYS 11 B CYS 65 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc12 B NE2 HIS 13 B HIS 67 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 B OE2 GLU 38 B GLU 92 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc14 B OE1 GLU 38 B GLU 92 1_555 J CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc15 B OD2 ASP 62 B ASP 116 1_555 I CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc16 I CD CD . B CD 301 1_555 M O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VQQ _atom_sites.fract_transf_matrix[1][1] 0.016557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CD A 1 301 3 CD CD . E 3 CD A 1 302 4 CD CD . F 4 SO4 A 1 303 751 SO4 SO4 . G 5 BTE A 1 305 1 BTE BTA . H 5 BTE A 1 306 1 BTE BTA . I 3 CD B 1 301 1 CD CD . J 3 CD B 1 302 2 CD CD . K 4 SO4 B 1 303 752 SO4 SO4 . L 6 HOH A 1 401 3 HOH HOH . L 6 HOH A 2 402 5 HOH HOH . L 6 HOH A 3 403 6 HOH HOH . L 6 HOH A 4 404 7 HOH HOH . L 6 HOH A 5 405 8 HOH HOH . L 6 HOH A 6 406 9 HOH HOH . L 6 HOH A 7 407 10 HOH HOH . L 6 HOH A 8 408 15 HOH HOH . L 6 HOH A 9 409 17 HOH HOH . L 6 HOH A 10 410 18 HOH HOH . L 6 HOH A 11 411 20 HOH HOH . L 6 HOH A 12 412 22 HOH HOH . L 6 HOH A 13 413 23 HOH HOH . L 6 HOH A 14 414 24 HOH HOH . L 6 HOH A 15 415 25 HOH HOH . L 6 HOH A 16 416 26 HOH HOH . L 6 HOH A 17 417 27 HOH HOH . L 6 HOH A 18 418 28 HOH HOH . L 6 HOH A 19 419 29 HOH HOH . L 6 HOH A 20 420 31 HOH HOH . L 6 HOH A 21 421 32 HOH HOH . L 6 HOH A 22 422 33 HOH HOH . L 6 HOH A 23 423 35 HOH HOH . L 6 HOH A 24 424 36 HOH HOH . L 6 HOH A 25 425 37 HOH HOH . L 6 HOH A 26 426 38 HOH HOH . L 6 HOH A 27 427 40 HOH HOH . L 6 HOH A 28 428 41 HOH HOH . L 6 HOH A 29 429 43 HOH HOH . L 6 HOH A 30 430 44 HOH HOH . L 6 HOH A 31 431 49 HOH HOH . L 6 HOH A 32 432 50 HOH HOH . L 6 HOH A 33 433 51 HOH HOH . L 6 HOH A 34 434 52 HOH HOH . L 6 HOH A 35 435 54 HOH HOH . L 6 HOH A 36 436 55 HOH HOH . L 6 HOH A 37 437 56 HOH HOH . L 6 HOH A 38 438 57 HOH HOH . L 6 HOH A 39 439 62 HOH HOH . L 6 HOH A 40 440 63 HOH HOH . L 6 HOH A 41 441 66 HOH HOH . L 6 HOH A 42 442 67 HOH HOH . L 6 HOH A 43 443 68 HOH HOH . L 6 HOH A 44 444 70 HOH HOH . L 6 HOH A 45 445 71 HOH HOH . L 6 HOH A 46 446 72 HOH HOH . L 6 HOH A 47 447 73 HOH HOH . L 6 HOH A 48 448 74 HOH HOH . L 6 HOH A 49 449 75 HOH HOH . L 6 HOH A 50 450 80 HOH HOH . L 6 HOH A 51 451 81 HOH HOH . L 6 HOH A 52 452 82 HOH HOH . L 6 HOH A 53 453 83 HOH HOH . L 6 HOH A 54 454 86 HOH HOH . L 6 HOH A 55 455 87 HOH HOH . L 6 HOH A 56 456 88 HOH HOH . L 6 HOH A 57 457 89 HOH HOH . L 6 HOH A 58 458 90 HOH HOH . L 6 HOH A 59 459 91 HOH HOH . L 6 HOH A 60 460 93 HOH HOH . M 6 HOH B 1 401 1 HOH HOH . M 6 HOH B 2 402 2 HOH HOH . M 6 HOH B 3 403 4 HOH HOH . M 6 HOH B 4 404 11 HOH HOH . M 6 HOH B 5 405 12 HOH HOH . M 6 HOH B 6 406 13 HOH HOH . M 6 HOH B 7 407 14 HOH HOH . M 6 HOH B 8 408 16 HOH HOH . M 6 HOH B 9 409 19 HOH HOH . M 6 HOH B 10 410 21 HOH HOH . M 6 HOH B 11 411 30 HOH HOH . M 6 HOH B 12 412 34 HOH HOH . M 6 HOH B 13 413 39 HOH HOH . M 6 HOH B 14 414 42 HOH HOH . M 6 HOH B 15 415 45 HOH HOH . M 6 HOH B 16 416 46 HOH HOH . M 6 HOH B 17 417 47 HOH HOH . M 6 HOH B 18 418 48 HOH HOH . M 6 HOH B 19 419 53 HOH HOH . M 6 HOH B 20 420 58 HOH HOH . M 6 HOH B 21 421 59 HOH HOH . M 6 HOH B 22 422 60 HOH HOH . M 6 HOH B 23 423 61 HOH HOH . M 6 HOH B 24 424 64 HOH HOH . M 6 HOH B 25 425 65 HOH HOH . M 6 HOH B 26 426 69 HOH HOH . M 6 HOH B 27 427 76 HOH HOH . M 6 HOH B 28 428 77 HOH HOH . M 6 HOH B 29 429 78 HOH HOH . M 6 HOH B 30 430 79 HOH HOH . M 6 HOH B 31 431 84 HOH HOH . M 6 HOH B 32 432 85 HOH HOH . M 6 HOH B 33 433 92 HOH HOH . M 6 HOH B 34 434 94 HOH HOH . M 6 HOH B 35 435 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.084 _atom_site.Cartn_y 40.942 _atom_site.Cartn_z -7.519 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #