data_3VQX
#
_model_server_result.job_id            FEXmYKGI1R3m39IbMHMu7w 
_model_server_result.datetime_utc      '2025-01-11 12:59:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vqx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    3VQX 
#
_exptl.entry_id    3VQX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         106.92 
_cell.angle_beta          91.41 
_cell.angle_gamma         113.83 
_cell.entry_id            3VQX 
_cell.length_a            62.798 
_cell.length_b            69.422 
_cell.length_c            83.326 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VQX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3VQX 
_atom_sites.fract_transf_matrix[1][1]    0.015924 
_atom_sites.fract_transf_matrix[1][2]    0.007033 
_atom_sites.fract_transf_matrix[1][3]    0.002867 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015747 
_atom_sites.fract_transf_matrix[2][3]    0.005489 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AMP A 1 501 501 AMP AMP . 
F 3 PO4 A 1 502 5954 PO4 PO4 . 
G 2 AMP B 1 501 502 AMP AMP . 
H 3 PO4 B 1 502 5953 PO4 PO4 . 
I 4 BLK C 1 601 601 BLK BLK . 
J 3 PO4 C 1 602 603 PO4 PO4 . 
K 4 BLK D 1 501 501 BLK BLK . 
L 3 PO4 D 1 502 503 PO4 PO4 . 
M 5 HOH A 1 601 601 HOH HOH . 
M 5 HOH A 2 602 602 HOH HOH . 
M 5 HOH A 3 603 603 HOH HOH . 
M 5 HOH A 4 604 604 HOH HOH . 
M 5 HOH A 5 605 605 HOH HOH . 
M 5 HOH A 6 606 606 HOH HOH . 
M 5 HOH A 7 607 607 HOH HOH . 
M 5 HOH A 8 608 608 HOH HOH . 
M 5 HOH A 9 609 609 HOH HOH . 
M 5 HOH A 10 610 610 HOH HOH . 
M 5 HOH A 11 611 611 HOH HOH . 
M 5 HOH A 12 612 612 HOH HOH . 
M 5 HOH A 13 613 613 HOH HOH . 
M 5 HOH A 14 614 614 HOH HOH . 
M 5 HOH A 15 615 615 HOH HOH . 
M 5 HOH A 16 616 616 HOH HOH . 
M 5 HOH A 17 617 617 HOH HOH . 
M 5 HOH A 18 618 618 HOH HOH . 
M 5 HOH A 19 619 619 HOH HOH . 
M 5 HOH A 20 620 620 HOH HOH . 
M 5 HOH A 21 621 621 HOH HOH . 
M 5 HOH A 22 622 622 HOH HOH . 
M 5 HOH A 23 623 623 HOH HOH . 
M 5 HOH A 24 624 624 HOH HOH . 
M 5 HOH A 25 625 625 HOH HOH . 
M 5 HOH A 26 626 626 HOH HOH . 
M 5 HOH A 27 627 627 HOH HOH . 
M 5 HOH A 28 628 628 HOH HOH . 
M 5 HOH A 29 629 629 HOH HOH . 
M 5 HOH A 30 630 630 HOH HOH . 
M 5 HOH A 31 631 631 HOH HOH . 
M 5 HOH A 32 632 632 HOH HOH . 
M 5 HOH A 33 633 633 HOH HOH . 
M 5 HOH A 34 634 634 HOH HOH . 
M 5 HOH A 35 635 635 HOH HOH . 
M 5 HOH A 36 636 636 HOH HOH . 
M 5 HOH A 37 637 637 HOH HOH . 
M 5 HOH A 38 638 638 HOH HOH . 
M 5 HOH A 39 639 639 HOH HOH . 
M 5 HOH A 40 640 640 HOH HOH . 
M 5 HOH A 41 641 641 HOH HOH . 
M 5 HOH A 42 642 642 HOH HOH . 
M 5 HOH A 43 643 643 HOH HOH . 
M 5 HOH A 44 644 644 HOH HOH . 
M 5 HOH A 45 645 645 HOH HOH . 
M 5 HOH A 46 646 646 HOH HOH . 
N 5 HOH B 1 601 601 HOH HOH . 
N 5 HOH B 2 602 602 HOH HOH . 
N 5 HOH B 3 603 603 HOH HOH . 
N 5 HOH B 4 604 604 HOH HOH . 
N 5 HOH B 5 605 605 HOH HOH . 
N 5 HOH B 6 606 606 HOH HOH . 
N 5 HOH B 7 607 607 HOH HOH . 
N 5 HOH B 8 608 608 HOH HOH . 
N 5 HOH B 9 609 609 HOH HOH . 
N 5 HOH B 10 610 610 HOH HOH . 
N 5 HOH B 11 611 611 HOH HOH . 
N 5 HOH B 12 612 612 HOH HOH . 
N 5 HOH B 13 613 613 HOH HOH . 
N 5 HOH B 14 614 614 HOH HOH . 
N 5 HOH B 15 615 615 HOH HOH . 
N 5 HOH B 16 616 616 HOH HOH . 
N 5 HOH B 17 617 617 HOH HOH . 
N 5 HOH B 18 618 618 HOH HOH . 
N 5 HOH B 19 619 619 HOH HOH . 
N 5 HOH B 20 620 620 HOH HOH . 
N 5 HOH B 21 621 621 HOH HOH . 
N 5 HOH B 22 622 622 HOH HOH . 
N 5 HOH B 23 623 623 HOH HOH . 
N 5 HOH B 24 624 624 HOH HOH . 
N 5 HOH B 25 625 625 HOH HOH . 
N 5 HOH B 26 626 626 HOH HOH . 
N 5 HOH B 27 627 627 HOH HOH . 
N 5 HOH B 28 628 628 HOH HOH . 
N 5 HOH B 29 629 629 HOH HOH . 
N 5 HOH B 30 630 630 HOH HOH . 
N 5 HOH B 31 631 631 HOH HOH . 
N 5 HOH B 32 632 632 HOH HOH . 
N 5 HOH B 33 633 633 HOH HOH . 
N 5 HOH B 34 634 634 HOH HOH . 
N 5 HOH B 35 635 635 HOH HOH . 
N 5 HOH B 36 636 636 HOH HOH . 
N 5 HOH B 37 637 637 HOH HOH . 
N 5 HOH B 38 638 638 HOH HOH . 
N 5 HOH B 39 639 639 HOH HOH . 
N 5 HOH B 40 640 640 HOH HOH . 
N 5 HOH B 41 641 641 HOH HOH . 
N 5 HOH B 42 642 642 HOH HOH . 
N 5 HOH B 43 643 643 HOH HOH . 
N 5 HOH B 44 644 644 HOH HOH . 
N 5 HOH B 45 645 645 HOH HOH . 
N 5 HOH B 46 646 646 HOH HOH . 
N 5 HOH B 47 647 647 HOH HOH . 
N 5 HOH B 48 648 648 HOH HOH . 
N 5 HOH B 49 649 649 HOH HOH . 
O 5 HOH C 1 701 701 HOH HOH . 
O 5 HOH C 2 702 702 HOH HOH . 
O 5 HOH C 3 703 703 HOH HOH . 
O 5 HOH C 4 704 704 HOH HOH . 
O 5 HOH C 5 705 705 HOH HOH . 
O 5 HOH C 6 706 706 HOH HOH . 
O 5 HOH C 7 707 707 HOH HOH . 
O 5 HOH C 8 708 708 HOH HOH . 
O 5 HOH C 9 709 709 HOH HOH . 
O 5 HOH C 10 710 710 HOH HOH . 
O 5 HOH C 11 711 711 HOH HOH . 
O 5 HOH C 12 712 712 HOH HOH . 
O 5 HOH C 13 713 713 HOH HOH . 
O 5 HOH C 14 714 714 HOH HOH . 
O 5 HOH C 15 715 715 HOH HOH . 
O 5 HOH C 16 716 716 HOH HOH . 
O 5 HOH C 17 717 717 HOH HOH . 
O 5 HOH C 18 718 718 HOH HOH . 
O 5 HOH C 19 719 719 HOH HOH . 
O 5 HOH C 20 720 720 HOH HOH . 
O 5 HOH C 21 721 721 HOH HOH . 
O 5 HOH C 22 722 722 HOH HOH . 
O 5 HOH C 23 723 723 HOH HOH . 
O 5 HOH C 24 724 724 HOH HOH . 
O 5 HOH C 25 725 725 HOH HOH . 
O 5 HOH C 26 726 726 HOH HOH . 
O 5 HOH C 27 727 727 HOH HOH . 
O 5 HOH C 28 728 728 HOH HOH . 
O 5 HOH C 29 729 729 HOH HOH . 
O 5 HOH C 30 730 730 HOH HOH . 
O 5 HOH C 31 731 731 HOH HOH . 
O 5 HOH C 32 732 732 HOH HOH . 
O 5 HOH C 33 733 733 HOH HOH . 
O 5 HOH C 34 734 734 HOH HOH . 
O 5 HOH C 35 735 735 HOH HOH . 
O 5 HOH C 36 736 736 HOH HOH . 
O 5 HOH C 37 737 737 HOH HOH . 
O 5 HOH C 38 738 738 HOH HOH . 
O 5 HOH C 39 739 739 HOH HOH . 
P 5 HOH D 1 601 601 HOH HOH . 
P 5 HOH D 2 602 602 HOH HOH . 
P 5 HOH D 3 603 603 HOH HOH . 
P 5 HOH D 4 604 604 HOH HOH . 
P 5 HOH D 5 605 605 HOH HOH . 
P 5 HOH D 6 606 606 HOH HOH . 
P 5 HOH D 7 607 607 HOH HOH . 
P 5 HOH D 8 608 608 HOH HOH . 
P 5 HOH D 9 609 609 HOH HOH . 
P 5 HOH D 10 610 610 HOH HOH . 
P 5 HOH D 11 611 611 HOH HOH . 
P 5 HOH D 12 612 612 HOH HOH . 
P 5 HOH D 13 613 613 HOH HOH . 
P 5 HOH D 14 614 614 HOH HOH . 
P 5 HOH D 15 615 615 HOH HOH . 
P 5 HOH D 16 616 616 HOH HOH . 
P 5 HOH D 17 617 617 HOH HOH . 
P 5 HOH D 18 618 618 HOH HOH . 
P 5 HOH D 19 619 619 HOH HOH . 
P 5 HOH D 20 620 620 HOH HOH . 
P 5 HOH D 21 621 621 HOH HOH . 
P 5 HOH D 22 622 622 HOH HOH . 
P 5 HOH D 23 623 623 HOH HOH . 
P 5 HOH D 24 624 624 HOH HOH . 
P 5 HOH D 25 625 625 HOH HOH . 
P 5 HOH D 26 626 626 HOH HOH . 
P 5 HOH D 27 627 627 HOH HOH . 
P 5 HOH D 28 628 628 HOH HOH . 
P 5 HOH D 29 629 629 HOH HOH . 
P 5 HOH D 30 630 630 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . E 2 -32.453 41.386 84.907 1 75.5 ? P AMP 501 A 1 
HETATM 2 O O1P AMP . . . E 2 -32.979 42.788 84.316 1 75.53 ? O1P AMP 501 A 1 
HETATM 3 O O2P AMP . . . E 2 -30.986 41.349 85.097 1 75.4 ? O2P AMP 501 A 1 
HETATM 4 O O3P AMP . . . E 2 -33.274 41.157 86.273 1 75.59 ? O3P AMP 501 A 1 
HETATM 5 O O5' AMP . . . E 2 -32.969 40.258 83.879 1 74.87 ? O5' AMP 501 A 1 
HETATM 6 C C5' AMP . . . E 2 -33.375 40.621 82.557 1 72.44 ? C5' AMP 501 A 1 
HETATM 7 C C4' AMP . . . E 2 -33.84 39.395 81.767 1 70.22 ? C4' AMP 501 A 1 
HETATM 8 O O4' AMP . . . E 2 -32.857 38.343 81.766 1 69.09 ? O4' AMP 501 A 1 
HETATM 9 C C3' AMP . . . E 2 -35.097 38.748 82.346 1 68.64 ? C3' AMP 501 A 1 
HETATM 10 O O3' AMP . . . E 2 -36.248 39.49 81.935 1 67.61 ? O3' AMP 501 A 1 
HETATM 11 C C2' AMP . . . E 2 -35.022 37.45 81.548 1 67.85 ? C2' AMP 501 A 1 
HETATM 12 O O2' AMP . . . E 2 -35.186 37.743 80.159 1 67.7 ? O2' AMP 501 A 1 
HETATM 13 C C1' AMP . . . E 2 -33.56 37.087 81.813 1 68.23 ? C1' AMP 501 A 1 
HETATM 14 N N9 AMP . . . E 2 -33.427 36.519 83.174 1 67.21 ? N9 AMP 501 A 1 
HETATM 15 C C8 AMP . . . E 2 -33.196 37.198 84.295 1 66.92 ? C8 AMP 501 A 1 
HETATM 16 N N7 AMP . . . E 2 -33.131 36.357 85.324 1 66.95 ? N7 AMP 501 A 1 
HETATM 17 C C5 AMP . . . E 2 -33.321 35.127 84.857 1 66.2 ? C5 AMP 501 A 1 
HETATM 18 C C6 AMP . . . E 2 -33.347 33.864 85.437 1 65.54 ? C6 AMP 501 A 1 
HETATM 19 N N6 AMP . . . E 2 -33.18 33.716 86.748 1 64.56 ? N6 AMP 501 A 1 
HETATM 20 N N1 AMP . . . E 2 -33.547 32.797 84.653 1 65.89 ? N1 AMP 501 A 1 
HETATM 21 C C2 AMP . . . E 2 -33.722 32.931 83.35 1 65.92 ? C2 AMP 501 A 1 
HETATM 22 N N3 AMP . . . E 2 -33.707 34.116 82.766 1 66.3 ? N3 AMP 501 A 1 
HETATM 23 C C4 AMP . . . E 2 -33.509 35.228 83.487 1 66.54 ? C4 AMP 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#