data_3VR8
#
_model_server_result.job_id            HU4DuLpV4uOJZfqQ5o062g 
_model_server_result.datetime_utc      '2024-11-24 16:23:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":202}' 
#
_entry.id    3VR8 
#
_exptl.entry_id    3VR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              263.332 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-3-methoxy-6-methyl-5-[(2E)-3-methylhex-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VR8 
_cell.length_a            123.707 
_cell.length_b            129.09 
_cell.length_c            221.167 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 O N N 
? 11 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? 
disulf ? disulf2 E SG CYS 191 E CYS 191 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
covale ? covale1 A NE2 HIS 79 A HIS 79 1_555 J C8M FAD . A FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
covale ? covale2 E NE2 HIS 79 E HIS 79 1_555 R C8M FAD . E FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? 
metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc13 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 V FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc26 V FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
#
_chem_comp.formula           'C15 H21 N O3' 
_chem_comp.formula_weight    263.332 
_chem_comp.id                RQX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-3-methoxy-6-methyl-5-[(2E)-3-methylhex-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 O3 RQX sing 585 n n 
O3 C5 RQX sing 586 n n 
C5 C6 RQX doub 587 n n 
C5 C4 RQX sing 588 n n 
O1 C4 RQX doub 589 n n 
N C6 RQX sing 590 n n 
C15 C14 RQX sing 591 n n 
C6 C7 RQX sing 592 n n 
C4 C3 RQX sing 593 n n 
C13 C14 RQX sing 594 n n 
C13 C11 RQX sing 595 n n 
C7 O2 RQX doub 596 n n 
C7 C2 RQX sing 597 n n 
C11 C10 RQX doub 598 e n 
C11 C12 RQX sing 599 n n 
C3 C2 RQX doub 600 n n 
C3 C9 RQX sing 601 n n 
C10 C9 RQX sing 602 n n 
C2 C1 RQX sing 603 n n 
C1 H1 RQX sing 604 n n 
C1 H2 RQX sing 605 n n 
C1 H3 RQX sing 606 n n 
N H4 RQX sing 607 n n 
N H5 RQX sing 608 n n 
C8 H6 RQX sing 609 n n 
C8 H7 RQX sing 610 n n 
C8 H8 RQX sing 611 n n 
C9 H9 RQX sing 612 n n 
C9 H10 RQX sing 613 n n 
C10 H11 RQX sing 614 n n 
C12 H12 RQX sing 615 n n 
C12 H13 RQX sing 616 n n 
C12 H14 RQX sing 617 n n 
C13 H15 RQX sing 618 n n 
C13 H16 RQX sing 619 n n 
C14 H17 RQX sing 620 n n 
C14 H18 RQX sing 621 n n 
C15 H19 RQX sing 622 n n 
C15 H20 RQX sing 623 n n 
C15 H21 RQX sing 624 n n 
#
_atom_sites.entry_id                     3VR8 
_atom_sites.fract_transf_matrix[1][1]    0.008084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004521 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 MLI A 1 701 300 MLI MLI . 
J 6 FAD A 1 702 301 FAD FAD . 
K 7 FES B 1 301 302 FES FES . 
L 8 SF4 B 1 302 303 SF4 FS4 . 
M 9 F3S B 1 303 304 F3S F3S . 
N 10 HEM C 1 201 305 HEM HEM . 
O 11 RQX C 1 202 500 RQX RQX . 
P 12 EPH D 1 201 306 EPH EPH . 
Q 5 MLI E 1 701 300 MLI MLI . 
R 6 FAD E 1 702 301 FAD FAD . 
S 7 FES F 1 301 302 FES FES . 
T 8 SF4 F 1 302 303 SF4 FS4 . 
U 9 F3S F 1 303 304 F3S F3S . 
V 10 HEM G 1 201 305 HEM HEM . 
W 11 RQX G 1 202 500 RQX RQX . 
X 12 EPH H 1 201 306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 RQX . . . O 11 -30.96 -17.788 -46.095 1 115.93 ? O2 RQX 202 C 1 
HETATM 2 C C7 RQX . . . O 11 -30.583 -18.778 -46.739 1 115.42 ? C7 RQX 202 C 1 
HETATM 3 C C2 RQX . . . O 11 -30.502 -20.129 -46.1 1 114.77 ? C2 RQX 202 C 1 
HETATM 4 C C1 RQX . . . O 11 -30.861 -20.419 -44.673 1 113.2 ? C1 RQX 202 C 1 
HETATM 5 C C6 RQX . . . O 11 -30.215 -18.564 -48.17 1 116.11 ? C6 RQX 202 C 1 
HETATM 6 N N RQX . . . O 11 -30.292 -17.326 -48.732 1 115.91 ? N RQX 202 C 1 
HETATM 7 C C5 RQX . . . O 11 -29.744 -19.72 -48.997 1 116.91 ? C5 RQX 202 C 1 
HETATM 8 O O3 RQX . . . O 11 -29.398 -19.522 -50.34 1 116.47 ? O3 RQX 202 C 1 
HETATM 9 C C8 RQX . . . O 11 -28.195 -18.847 -50.733 1 114.84 ? C8 RQX 202 C 1 
HETATM 10 C C4 RQX . . . O 11 -29.674 -21.087 -48.348 1 117.31 ? C4 RQX 202 C 1 
HETATM 11 O O1 RQX . . . O 11 -29.289 -22.043 -49.071 1 117.16 ? O1 RQX 202 C 1 
HETATM 12 C C3 RQX . . . O 11 -30.058 -21.287 -46.886 1 116.71 ? C3 RQX 202 C 1 
HETATM 13 C C9 RQX . . . O 11 -30.025 -22.601 -46.102 1 117.65 ? C9 RQX 202 C 1 
HETATM 14 C C10 RQX . . . O 11 -30.726 -23.741 -46.822 1 119.15 ? C10 RQX 202 C 1 
HETATM 15 C C11 RQX . . . O 11 -32.037 -24.062 -46.724 1 119.94 ? C11 RQX 202 C 1 
HETATM 16 C C12 RQX . . . O 11 -32.992 -23.265 -45.846 1 119.55 ? C12 RQX 202 C 1 
HETATM 17 C C13 RQX . . . O 11 -32.554 -25.246 -47.542 1 119.8 ? C13 RQX 202 C 1 
HETATM 18 C C14 RQX . . . O 11 -31.722 -26.528 -47.412 1 119.01 ? C14 RQX 202 C 1 
HETATM 19 C C15 RQX . . . O 11 -31.736 -27.31 -48.706 1 117.87 ? C15 RQX 202 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#