data_3VRO # _model_server_result.job_id AI5gFzEdBoik3JxdtXlR1g _model_server_result.datetime_utc '2025-01-23 03:31:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3VRO # _exptl.entry_id 3VRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VRO _cell.length_a 93.282 _cell.length_b 108.493 _cell.length_c 54.761 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 7 B GLU 418 1_555 B N PTR 8 B PTR 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C PTR 8 B PTR 419 1_555 B N THR 9 B THR 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? metalc ? metalc1 A OD1 ASP 207 A ASP 199 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A OG1 THR 209 A THR 201 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A OG SER 211 A SER 203 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 A O HIS 213 A HIS 205 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE2 GLU 218 A GLU 210 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 A OE1 GLU 218 A GLU 210 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc7 C CA CA . A CA 401 1_555 D O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VRO _atom_sites.fract_transf_matrix[1][1] 0.01072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 1 CA CA . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 9 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 12 HOH HOH . D 4 HOH A 12 512 13 HOH HOH . D 4 HOH A 13 513 14 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 18 HOH HOH . D 4 HOH A 18 518 19 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 23 HOH HOH . D 4 HOH A 22 522 24 HOH HOH . D 4 HOH A 23 523 25 HOH HOH . D 4 HOH A 24 524 26 HOH HOH . D 4 HOH A 25 525 27 HOH HOH . D 4 HOH A 26 526 28 HOH HOH . D 4 HOH A 27 527 29 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 31 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 33 HOH HOH . D 4 HOH A 32 532 34 HOH HOH . D 4 HOH A 33 533 35 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 38 HOH HOH . D 4 HOH A 37 537 39 HOH HOH . D 4 HOH A 38 538 40 HOH HOH . D 4 HOH A 39 539 41 HOH HOH . D 4 HOH A 40 540 42 HOH HOH . D 4 HOH A 41 541 43 HOH HOH . D 4 HOH A 42 542 44 HOH HOH . D 4 HOH A 43 543 45 HOH HOH . D 4 HOH A 44 544 46 HOH HOH . D 4 HOH A 45 545 47 HOH HOH . D 4 HOH A 46 546 48 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 50 HOH HOH . D 4 HOH A 49 549 51 HOH HOH . D 4 HOH A 50 550 52 HOH HOH . D 4 HOH A 51 551 53 HOH HOH . D 4 HOH A 52 552 54 HOH HOH . D 4 HOH A 53 553 55 HOH HOH . D 4 HOH A 54 554 56 HOH HOH . D 4 HOH A 55 555 57 HOH HOH . D 4 HOH A 56 556 58 HOH HOH . D 4 HOH A 57 557 59 HOH HOH . D 4 HOH A 58 558 60 HOH HOH . D 4 HOH A 59 559 61 HOH HOH . D 4 HOH A 60 560 62 HOH HOH . D 4 HOH A 61 561 63 HOH HOH . D 4 HOH A 62 562 64 HOH HOH . D 4 HOH A 63 563 65 HOH HOH . D 4 HOH A 64 564 66 HOH HOH . D 4 HOH A 65 565 67 HOH HOH . D 4 HOH A 66 566 68 HOH HOH . D 4 HOH A 67 567 69 HOH HOH . D 4 HOH A 68 568 70 HOH HOH . D 4 HOH A 69 569 71 HOH HOH . D 4 HOH A 70 570 72 HOH HOH . D 4 HOH A 71 571 73 HOH HOH . D 4 HOH A 72 572 74 HOH HOH . D 4 HOH A 73 573 75 HOH HOH . D 4 HOH A 74 574 76 HOH HOH . D 4 HOH A 75 575 77 HOH HOH . D 4 HOH A 76 576 78 HOH HOH . D 4 HOH A 77 577 79 HOH HOH . D 4 HOH A 78 578 80 HOH HOH . D 4 HOH A 79 579 81 HOH HOH . D 4 HOH A 80 580 82 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 84 HOH HOH . D 4 HOH A 83 583 85 HOH HOH . D 4 HOH A 84 584 86 HOH HOH . D 4 HOH A 85 585 87 HOH HOH . D 4 HOH A 86 586 88 HOH HOH . D 4 HOH A 87 587 89 HOH HOH . D 4 HOH A 88 588 90 HOH HOH . D 4 HOH A 89 589 91 HOH HOH . D 4 HOH A 90 590 92 HOH HOH . D 4 HOH A 91 591 93 HOH HOH . D 4 HOH A 92 592 94 HOH HOH . D 4 HOH A 93 593 95 HOH HOH . D 4 HOH A 94 594 96 HOH HOH . D 4 HOH A 95 595 97 HOH HOH . D 4 HOH A 96 596 98 HOH HOH . D 4 HOH A 97 597 99 HOH HOH . D 4 HOH A 98 598 100 HOH HOH . D 4 HOH A 99 599 101 HOH HOH . D 4 HOH A 100 600 102 HOH HOH . D 4 HOH A 101 601 104 HOH HOH . D 4 HOH A 102 602 105 HOH HOH . D 4 HOH A 103 603 106 HOH HOH . D 4 HOH A 104 604 107 HOH HOH . D 4 HOH A 105 605 108 HOH HOH . D 4 HOH A 106 606 109 HOH HOH . D 4 HOH A 107 607 110 HOH HOH . D 4 HOH A 108 608 111 HOH HOH . D 4 HOH A 109 609 112 HOH HOH . D 4 HOH A 110 610 113 HOH HOH . D 4 HOH A 111 611 114 HOH HOH . D 4 HOH A 112 612 115 HOH HOH . D 4 HOH A 113 613 116 HOH HOH . D 4 HOH A 114 614 117 HOH HOH . D 4 HOH A 115 615 118 HOH HOH . D 4 HOH A 116 616 119 HOH HOH . D 4 HOH A 117 617 120 HOH HOH . D 4 HOH A 118 618 121 HOH HOH . D 4 HOH A 119 619 122 HOH HOH . D 4 HOH A 120 620 123 HOH HOH . D 4 HOH A 121 621 124 HOH HOH . D 4 HOH A 122 622 125 HOH HOH . D 4 HOH A 123 623 126 HOH HOH . D 4 HOH A 124 624 127 HOH HOH . D 4 HOH A 125 625 128 HOH HOH . D 4 HOH A 126 626 129 HOH HOH . D 4 HOH A 127 627 130 HOH HOH . D 4 HOH A 128 628 131 HOH HOH . D 4 HOH A 129 629 132 HOH HOH . D 4 HOH A 130 630 133 HOH HOH . D 4 HOH A 131 631 135 HOH HOH . D 4 HOH A 132 632 136 HOH HOH . D 4 HOH A 133 633 137 HOH HOH . D 4 HOH A 134 634 138 HOH HOH . D 4 HOH A 135 635 139 HOH HOH . D 4 HOH A 136 636 140 HOH HOH . D 4 HOH A 137 637 141 HOH HOH . D 4 HOH A 138 638 142 HOH HOH . D 4 HOH A 139 639 143 HOH HOH . D 4 HOH A 140 640 144 HOH HOH . D 4 HOH A 141 641 145 HOH HOH . D 4 HOH A 142 642 146 HOH HOH . D 4 HOH A 143 643 148 HOH HOH . D 4 HOH A 144 644 149 HOH HOH . D 4 HOH A 145 645 150 HOH HOH . D 4 HOH A 146 646 151 HOH HOH . D 4 HOH A 147 647 152 HOH HOH . D 4 HOH A 148 648 153 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 155 HOH HOH . D 4 HOH A 151 651 156 HOH HOH . D 4 HOH A 152 652 157 HOH HOH . D 4 HOH A 153 653 158 HOH HOH . D 4 HOH A 154 654 159 HOH HOH . D 4 HOH A 155 655 160 HOH HOH . D 4 HOH A 156 656 161 HOH HOH . D 4 HOH A 157 657 162 HOH HOH . D 4 HOH A 158 658 163 HOH HOH . D 4 HOH A 159 659 164 HOH HOH . D 4 HOH A 160 660 165 HOH HOH . D 4 HOH A 161 661 166 HOH HOH . D 4 HOH A 162 662 167 HOH HOH . D 4 HOH A 163 663 168 HOH HOH . D 4 HOH A 164 664 169 HOH HOH . D 4 HOH A 165 665 170 HOH HOH . D 4 HOH A 166 666 171 HOH HOH . D 4 HOH A 167 667 172 HOH HOH . D 4 HOH A 168 668 173 HOH HOH . D 4 HOH A 169 669 174 HOH HOH . D 4 HOH A 170 670 175 HOH HOH . D 4 HOH A 171 671 176 HOH HOH . D 4 HOH A 172 672 177 HOH HOH . D 4 HOH A 173 673 178 HOH HOH . D 4 HOH A 174 674 179 HOH HOH . D 4 HOH A 175 675 180 HOH HOH . D 4 HOH A 176 676 181 HOH HOH . D 4 HOH A 177 677 182 HOH HOH . D 4 HOH A 178 678 183 HOH HOH . D 4 HOH A 179 679 184 HOH HOH . D 4 HOH A 180 680 185 HOH HOH . D 4 HOH A 181 681 186 HOH HOH . D 4 HOH A 182 682 187 HOH HOH . D 4 HOH A 183 683 188 HOH HOH . D 4 HOH A 184 684 189 HOH HOH . D 4 HOH A 185 685 190 HOH HOH . D 4 HOH A 186 686 191 HOH HOH . D 4 HOH A 187 687 192 HOH HOH . D 4 HOH A 188 688 193 HOH HOH . D 4 HOH A 189 689 194 HOH HOH . D 4 HOH A 190 690 195 HOH HOH . D 4 HOH A 191 691 196 HOH HOH . D 4 HOH A 192 692 197 HOH HOH . D 4 HOH A 193 693 198 HOH HOH . D 4 HOH A 194 694 199 HOH HOH . D 4 HOH A 195 695 200 HOH HOH . D 4 HOH A 196 696 201 HOH HOH . D 4 HOH A 197 697 202 HOH HOH . D 4 HOH A 198 698 203 HOH HOH . D 4 HOH A 199 699 204 HOH HOH . E 4 HOH B 1 501 4 HOH HOH . E 4 HOH B 2 502 22 HOH HOH . E 4 HOH B 3 503 103 HOH HOH . E 4 HOH B 4 504 134 HOH HOH . E 4 HOH B 5 505 147 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -27.698 _atom_site.Cartn_y -26.376 _atom_site.Cartn_z -1.831 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 14.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #