data_3VRU # _model_server_result.job_id ucbHoC3gmPHA7m8UbxIoRw _model_server_result.datetime_utc '2024-11-22 15:52:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3VRU # _exptl.entry_id 3VRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.61 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(2R)-5-hydroxy-5-methylhexan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.89 _cell.angle_gamma 90 _cell.entry_id 3VRU _cell.length_a 154.34 _cell.length_b 42.29 _cell.length_c 42.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H42 O3' _chem_comp.formula_weight 402.61 _chem_comp.id YS3 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(2R)-5-hydroxy-5-methylhexan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAW YS3 sing 376 n n OAH CBA YS3 sing 377 n n CAC CBA YS3 sing 378 n n CAP CBA YS3 sing 379 n n CAP CAM YS3 sing 380 n n CAW CAM YS3 sing 381 n n CAW CAZ YS3 sing 382 n n CBA CAD YS3 sing 383 n n CAO CAK YS3 sing 384 n n CAO CBC YS3 sing 385 n n CAZ CBC YS3 sing 386 n n CAZ CAN YS3 sing 387 n n CAK CAL YS3 sing 388 n n CBC CBB YS3 sing 389 n n CBC CAE YS3 sing 390 n n CAL CAV YS3 sing 391 n n CAN CAQ YS3 sing 392 n n CBB CAQ YS3 sing 393 n n CBB CAV YS3 sing 394 n n CAV CAJ YS3 doub 395 e n CAJ CAI YS3 sing 396 n n CAI CAU YS3 doub 397 n n CAU CAS YS3 sing 398 n n CAU CAR YS3 sing 399 n n CAS CAY YS3 sing 400 n n CAR CAX YS3 sing 401 n n OAG CAY YS3 sing 402 n n CAY CAT YS3 sing 403 n n CAX CAT YS3 sing 404 n n CAX OAF YS3 sing 405 n n CAT CAA YS3 doub 406 n n OAH H1 YS3 sing 407 n n CAC H2 YS3 sing 408 n n CAC H3 YS3 sing 409 n n CAC H4 YS3 sing 410 n n CAD H5 YS3 sing 411 n n CAD H6 YS3 sing 412 n n CAD H7 YS3 sing 413 n n CAP H8 YS3 sing 414 n n CAP H9 YS3 sing 415 n n CAM H10 YS3 sing 416 n n CAM H11 YS3 sing 417 n n CAW H12 YS3 sing 418 n n CAB H13 YS3 sing 419 n n CAB H14 YS3 sing 420 n n CAB H15 YS3 sing 421 n n CAZ H16 YS3 sing 422 n n CAN H17 YS3 sing 423 n n CAN H18 YS3 sing 424 n n CAQ H19 YS3 sing 425 n n CAQ H20 YS3 sing 426 n n CBB H21 YS3 sing 427 n n CAE H22 YS3 sing 428 n n CAE H23 YS3 sing 429 n n CAE H24 YS3 sing 430 n n CAO H25 YS3 sing 431 n n CAO H26 YS3 sing 432 n n CAK H27 YS3 sing 433 n n CAK H28 YS3 sing 434 n n CAL H29 YS3 sing 435 n n CAL H30 YS3 sing 436 n n CAJ H32 YS3 sing 437 n n CAI H33 YS3 sing 438 n n CAS H35 YS3 sing 439 n n CAS H36 YS3 sing 440 n n CAR H37 YS3 sing 441 n n CAR H38 YS3 sing 442 n n CAX H39 YS3 sing 443 n n OAF H40 YS3 sing 444 n n CAA H41 YS3 sing 445 n n CAA H42 YS3 sing 446 n n CAY H43 YS3 sing 447 n n OAG H44 YS3 sing 448 n n # _atom_sites.entry_id 3VRU _atom_sites.fract_transf_matrix[1][1] 0.006479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YS3 A 1 501 501 YS3 YS3 . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 643 HOH HOH . D 4 HOH A 44 644 644 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . D 4 HOH A 82 682 682 HOH HOH . D 4 HOH A 83 683 683 HOH HOH . D 4 HOH A 84 684 684 HOH HOH . D 4 HOH A 85 685 685 HOH HOH . D 4 HOH A 86 686 687 HOH HOH . D 4 HOH A 87 687 688 HOH HOH . D 4 HOH A 88 688 689 HOH HOH . D 4 HOH A 89 689 691 HOH HOH . D 4 HOH A 90 690 692 HOH HOH . D 4 HOH A 91 691 693 HOH HOH . D 4 HOH A 92 692 694 HOH HOH . D 4 HOH A 93 693 695 HOH HOH . D 4 HOH A 94 694 696 HOH HOH . D 4 HOH A 95 695 698 HOH HOH . D 4 HOH A 96 696 699 HOH HOH . D 4 HOH A 97 697 700 HOH HOH . D 4 HOH A 98 698 701 HOH HOH . D 4 HOH A 99 699 702 HOH HOH . D 4 HOH A 100 700 703 HOH HOH . D 4 HOH A 101 701 705 HOH HOH . D 4 HOH A 102 702 706 HOH HOH . D 4 HOH A 103 703 707 HOH HOH . D 4 HOH A 104 704 708 HOH HOH . D 4 HOH A 105 705 709 HOH HOH . D 4 HOH A 106 706 710 HOH HOH . D 4 HOH A 107 707 711 HOH HOH . D 4 HOH A 108 708 712 HOH HOH . D 4 HOH A 109 709 713 HOH HOH . D 4 HOH A 110 710 714 HOH HOH . D 4 HOH A 111 711 715 HOH HOH . D 4 HOH A 112 712 716 HOH HOH . D 4 HOH A 113 713 717 HOH HOH . D 4 HOH A 114 714 718 HOH HOH . D 4 HOH A 115 715 719 HOH HOH . D 4 HOH A 116 716 720 HOH HOH . D 4 HOH A 117 717 721 HOH HOH . D 4 HOH A 118 718 722 HOH HOH . D 4 HOH A 119 719 723 HOH HOH . D 4 HOH A 120 720 724 HOH HOH . D 4 HOH A 121 721 725 HOH HOH . D 4 HOH A 122 722 726 HOH HOH . D 4 HOH A 123 723 727 HOH HOH . D 4 HOH A 124 724 728 HOH HOH . D 4 HOH A 125 725 729 HOH HOH . D 4 HOH A 126 726 730 HOH HOH . D 4 HOH A 127 727 731 HOH HOH . D 4 HOH A 128 728 732 HOH HOH . D 4 HOH A 129 729 733 HOH HOH . D 4 HOH A 130 730 734 HOH HOH . D 4 HOH A 131 731 735 HOH HOH . D 4 HOH A 132 732 736 HOH HOH . D 4 HOH A 133 733 737 HOH HOH . D 4 HOH A 134 734 738 HOH HOH . D 4 HOH A 135 735 739 HOH HOH . D 4 HOH A 136 736 740 HOH HOH . D 4 HOH A 137 737 741 HOH HOH . D 4 HOH A 138 738 742 HOH HOH . D 4 HOH A 139 739 743 HOH HOH . D 4 HOH A 140 740 744 HOH HOH . D 4 HOH A 141 741 745 HOH HOH . D 4 HOH A 142 742 746 HOH HOH . D 4 HOH A 143 743 747 HOH HOH . D 4 HOH A 144 744 748 HOH HOH . D 4 HOH A 145 745 749 HOH HOH . D 4 HOH A 146 746 750 HOH HOH . D 4 HOH A 147 747 751 HOH HOH . D 4 HOH A 148 748 752 HOH HOH . D 4 HOH A 149 749 753 HOH HOH . D 4 HOH A 150 750 754 HOH HOH . D 4 HOH A 151 751 755 HOH HOH . D 4 HOH A 152 752 756 HOH HOH . D 4 HOH A 153 753 757 HOH HOH . D 4 HOH A 154 754 758 HOH HOH . D 4 HOH A 155 755 759 HOH HOH . D 4 HOH A 156 756 760 HOH HOH . D 4 HOH A 157 757 761 HOH HOH . D 4 HOH A 158 758 762 HOH HOH . E 4 HOH C 1 701 701 HOH HOH . E 4 HOH C 2 702 702 HOH HOH . E 4 HOH C 3 703 703 HOH HOH . E 4 HOH C 4 704 705 HOH HOH . E 4 HOH C 5 705 706 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH YS3 . . . C 3 -11.962 19.471 -7.414 1 54.51 ? OAH YS3 501 A 1 HETATM 2 C CBA YS3 . . . C 3 -11.421 20.521 -6.639 1 52.91 ? CBA YS3 501 A 1 HETATM 3 C CAC YS3 . . . C 3 -10.027 20.842 -7.102 1 56.53 ? CAC YS3 501 A 1 HETATM 4 C CAD YS3 . . . C 3 -11.355 20 -5.177 1 50.08 ? CAD YS3 501 A 1 HETATM 5 C CAP YS3 . . . C 3 -12.305 21.791 -6.887 1 51.69 ? CAP YS3 501 A 1 HETATM 6 C CAM YS3 . . . C 3 -13.571 21.966 -6.06 1 48 ? CAM YS3 501 A 1 HETATM 7 C CAW YS3 . . . C 3 -14.556 22.823 -6.834 1 51.56 ? CAW YS3 501 A 1 HETATM 8 C CAB YS3 . . . C 3 -15.213 22.05 -7.995 1 50.7 ? CAB YS3 501 A 1 HETATM 9 C CAZ YS3 . . . C 3 -15.692 23.479 -6.004 1 50.06 ? CAZ YS3 501 A 1 HETATM 10 C CAN YS3 . . . C 3 -16.26 22.626 -4.831 1 49.38 ? CAN YS3 501 A 1 HETATM 11 C CAQ YS3 . . . C 3 -17.025 23.657 -3.966 1 46.27 ? CAQ YS3 501 A 1 HETATM 12 C CBB YS3 . . . C 3 -16.779 24.984 -4.693 1 44.89 ? CBB YS3 501 A 1 HETATM 13 C CBC YS3 . . . C 3 -15.395 24.852 -5.346 1 48.49 ? CBC YS3 501 A 1 HETATM 14 C CAE YS3 . . . C 3 -14.195 24.809 -4.384 1 45.33 ? CAE YS3 501 A 1 HETATM 15 C CAO YS3 . . . C 3 -15.257 26.027 -6.376 1 50.56 ? CAO YS3 501 A 1 HETATM 16 C CAK YS3 . . . C 3 -15.541 27.434 -5.761 1 50.67 ? CAK YS3 501 A 1 HETATM 17 C CAL YS3 . . . C 3 -16.842 27.479 -4.899 1 46.24 ? CAL YS3 501 A 1 HETATM 18 C CAV YS3 . . . C 3 -16.891 26.297 -3.912 1 45.33 ? CAV YS3 501 A 1 HETATM 19 C CAJ YS3 . . . C 3 -16.96 26.427 -2.5 1 40.48 ? CAJ YS3 501 A 1 HETATM 20 C CAI YS3 . . . C 3 -16.556 27.619 -1.882 1 43.04 ? CAI YS3 501 A 1 HETATM 21 C CAU YS3 . . . C 3 -16.595 27.812 -0.505 1 43.68 ? CAU YS3 501 A 1 HETATM 22 C CAS YS3 . . . C 3 -16.363 29.223 0.051 1 45.34 ? CAS YS3 501 A 1 HETATM 23 C CAR YS3 . . . C 3 -16.153 26.687 0.44 1 41.54 ? CAR YS3 501 A 1 HETATM 24 C CAX YS3 . . . C 3 -16.916 26.795 1.776 1 42.48 ? CAX YS3 501 A 1 HETATM 25 O OAF YS3 . . . C 3 -16.556 25.798 2.685 1 39.52 ? OAF YS3 501 A 1 HETATM 26 C CAT YS3 . . . C 3 -16.555 28.141 2.355 1 40.02 ? CAT YS3 501 A 1 HETATM 27 C CAA YS3 . . . C 3 -16.02 28.294 3.607 1 41.59 ? CAA YS3 501 A 1 HETATM 28 C CAY YS3 . . . C 3 -16.946 29.337 1.501 1 43.06 ? CAY YS3 501 A 1 HETATM 29 O OAG YS3 . . . C 3 -18.377 29.263 1.485 1 39.71 ? OAG YS3 501 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #