data_3VRW # _model_server_result.job_id 8CEH8-fkJd266M-Quh6n5w _model_server_result.datetime_utc '2024-10-12 16:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3VRW # _exptl.entry_id 3VRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.769 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.49 _cell.angle_gamma 90 _cell.entry_id 3VRW _cell.length_a 154.21 _cell.length_b 43.21 _cell.length_c 42.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H54 O3' _chem_comp.formula_weight 486.769 _chem_comp.id YS5 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAB YS5 sing 376 n n CAL CAO YS5 sing 377 n n CAR CAO YS5 sing 378 n n CAR CBE YS5 sing 379 n n OAI CBH YS5 sing 380 n n CAE CBD YS5 sing 381 n n CAX CBE YS5 sing 382 n n CAX CBH YS5 sing 383 n n CBE CBD YS5 sing 384 n n CAN CBH YS5 sing 385 n n CAN CAD YS5 sing 386 n n CBH CAM YS5 sing 387 n n CAT CAP YS5 sing 388 n n CAT CBI YS5 sing 389 n n CBD CBF YS5 sing 390 n n CBF CBI YS5 sing 391 n n CBF CAS YS5 sing 392 n n CAP CAQ YS5 sing 393 n n CBI CBG YS5 sing 394 n n CBI CAF YS5 sing 395 n n CAM CAC YS5 sing 396 n n CAQ CBA YS5 sing 397 n n CAS CAU YS5 sing 398 n n CBG CBA YS5 sing 399 n n CBG CAU YS5 sing 400 n n CBA CAK YS5 doub 401 e n CAK CAJ YS5 sing 402 n n CAJ CAZ YS5 doub 403 n n CAZ CAV YS5 sing 404 n n CAZ CAW YS5 sing 405 n n CAV CBB YS5 sing 406 n n CAW CBC YS5 sing 407 n n OAG CBB YS5 sing 408 n n CBB CAY YS5 sing 409 n n CBC CAY YS5 sing 410 n n CBC OAH YS5 sing 411 n n CAY CAA YS5 doub 412 n n CAV H1 YS5 sing 413 n n CAV H2 YS5 sing 414 n n CBB H3 YS5 sing 415 n n OAG H4 YS5 sing 416 n n CAA H6 YS5 sing 417 n n CAA H8 YS5 sing 418 n n CBC H9 YS5 sing 419 n n OAH H10 YS5 sing 420 n n CAW H11 YS5 sing 421 n n CAW H12 YS5 sing 422 n n CAJ H14 YS5 sing 423 n n CAK H15 YS5 sing 424 n n CAQ H17 YS5 sing 425 n n CAQ H18 YS5 sing 426 n n CAP H19 YS5 sing 427 n n CAP H20 YS5 sing 428 n n CAT H21 YS5 sing 429 n n CAT H22 YS5 sing 430 n n CAF H23 YS5 sing 431 n n CAF H24 YS5 sing 432 n n CAF H25 YS5 sing 433 n n CBG H26 YS5 sing 434 n n CAU H27 YS5 sing 435 n n CAU H28 YS5 sing 436 n n CAS H29 YS5 sing 437 n n CAS H30 YS5 sing 438 n n CBF H31 YS5 sing 439 n n CBD H32 YS5 sing 440 n n CAE H33 YS5 sing 441 n n CAE H34 YS5 sing 442 n n CAE H35 YS5 sing 443 n n CBE H36 YS5 sing 444 n n CAX H37 YS5 sing 445 n n CAX H38 YS5 sing 446 n n CAN H39 YS5 sing 447 n n CAN H40 YS5 sing 448 n n CAD H41 YS5 sing 449 n n CAD H42 YS5 sing 450 n n CAD H43 YS5 sing 451 n n OAI H44 YS5 sing 452 n n CAM H45 YS5 sing 453 n n CAM H46 YS5 sing 454 n n CAC H47 YS5 sing 455 n n CAC H48 YS5 sing 456 n n CAC H49 YS5 sing 457 n n CAR H50 YS5 sing 458 n n CAR H51 YS5 sing 459 n n CAO H52 YS5 sing 460 n n CAO H53 YS5 sing 461 n n CAL H54 YS5 sing 462 n n CAL H55 YS5 sing 463 n n CAB H56 YS5 sing 464 n n CAB H57 YS5 sing 465 n n CAB H58 YS5 sing 466 n n # _atom_sites.entry_id 3VRW _atom_sites.fract_transf_matrix[1][1] 0.006485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YS5 A 1 501 1 YS5 DRG . D 4 HOH A 1 601 2 HOH HOH . D 4 HOH A 2 602 3 HOH HOH . D 4 HOH A 3 603 4 HOH HOH . D 4 HOH A 4 604 6 HOH HOH . D 4 HOH A 5 605 8 HOH HOH . D 4 HOH A 6 606 11 HOH HOH . D 4 HOH A 7 607 12 HOH HOH . D 4 HOH A 8 608 13 HOH HOH . D 4 HOH A 9 609 14 HOH HOH . D 4 HOH A 10 610 16 HOH HOH . D 4 HOH A 11 611 17 HOH HOH . D 4 HOH A 12 612 18 HOH HOH . D 4 HOH A 13 613 19 HOH HOH . D 4 HOH A 14 614 21 HOH HOH . D 4 HOH A 15 615 22 HOH HOH . D 4 HOH A 16 616 23 HOH HOH . D 4 HOH A 17 617 24 HOH HOH . D 4 HOH A 18 618 25 HOH HOH . D 4 HOH A 19 619 26 HOH HOH . D 4 HOH A 20 620 31 HOH HOH . D 4 HOH A 21 621 32 HOH HOH . D 4 HOH A 22 622 36 HOH HOH . D 4 HOH A 23 623 38 HOH HOH . D 4 HOH A 24 624 39 HOH HOH . D 4 HOH A 25 625 40 HOH HOH . D 4 HOH A 26 626 41 HOH HOH . D 4 HOH A 27 627 43 HOH HOH . D 4 HOH A 28 628 44 HOH HOH . D 4 HOH A 29 629 45 HOH HOH . D 4 HOH A 30 630 47 HOH HOH . D 4 HOH A 31 631 48 HOH HOH . D 4 HOH A 32 632 49 HOH HOH . D 4 HOH A 33 633 51 HOH HOH . D 4 HOH A 34 634 52 HOH HOH . D 4 HOH A 35 635 55 HOH HOH . D 4 HOH A 36 636 58 HOH HOH . D 4 HOH A 37 637 59 HOH HOH . D 4 HOH A 38 638 60 HOH HOH . D 4 HOH A 39 639 424 HOH HOH . D 4 HOH A 40 640 3 HOH HOH . D 4 HOH A 41 641 5 HOH HOH . D 4 HOH A 42 642 6 HOH HOH . D 4 HOH A 43 643 8 HOH HOH . D 4 HOH A 44 644 9 HOH HOH . D 4 HOH A 45 645 10 HOH HOH . D 4 HOH A 46 646 11 HOH HOH . D 4 HOH A 47 647 12 HOH HOH . D 4 HOH A 48 648 14 HOH HOH . D 4 HOH A 49 649 18 HOH HOH . D 4 HOH A 50 650 19 HOH HOH . D 4 HOH A 51 651 20 HOH HOH . D 4 HOH A 52 652 21 HOH HOH . D 4 HOH A 53 653 22 HOH HOH . D 4 HOH A 54 654 23 HOH HOH . D 4 HOH A 55 655 24 HOH HOH . D 4 HOH A 56 656 26 HOH HOH . D 4 HOH A 57 657 28 HOH HOH . D 4 HOH A 58 658 31 HOH HOH . D 4 HOH A 59 659 32 HOH HOH . D 4 HOH A 60 660 33 HOH HOH . D 4 HOH A 61 661 37 HOH HOH . D 4 HOH A 62 662 39 HOH HOH . D 4 HOH A 63 663 40 HOH HOH . D 4 HOH A 64 664 41 HOH HOH . D 4 HOH A 65 665 1 HOH HOH . D 4 HOH A 66 666 4 HOH HOH . D 4 HOH A 67 667 23 HOH HOH . E 4 HOH C 1 701 38 HOH HOH . E 4 HOH C 2 702 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV YS5 . . . C 3 -16.525 29.678 0.23 1 60.41 ? CAV YS5 501 A 1 HETATM 2 C CBB YS5 . . . C 3 -17.058 29.714 1.68 1 60.81 ? CBB YS5 501 A 1 HETATM 3 O OAG YS5 . . . C 3 -18.461 29.836 1.662 1 61.39 ? OAG YS5 501 A 1 HETATM 4 C CAY YS5 . . . C 3 -16.668 28.578 2.394 1 60.69 ? CAY YS5 501 A 1 HETATM 5 C CAA YS5 . . . C 3 -16.021 28.719 3.631 1 60.92 ? CAA YS5 501 A 1 HETATM 6 C CBC YS5 . . . C 3 -16.874 27.326 1.835 1 60.61 ? CBC YS5 501 A 1 HETATM 7 O OAH YS5 . . . C 3 -16.368 26.325 2.702 1 60.5 ? OAH YS5 501 A 1 HETATM 8 C CAW YS5 . . . C 3 -16.155 27.248 0.45 1 60.5 ? CAW YS5 501 A 1 HETATM 9 C CAZ YS5 . . . C 3 -16.462 28.397 -0.348 1 60.46 ? CAZ YS5 501 A 1 HETATM 10 C CAJ YS5 . . . C 3 -16.828 28.285 -1.689 1 60.72 ? CAJ YS5 501 A 1 HETATM 11 C CAK YS5 . . . C 3 -16.293 27.036 -2.425 1 61.33 ? CAK YS5 501 A 1 HETATM 12 C CBA YS5 . . . C 3 -16.605 26.83 -3.779 1 62.12 ? CBA YS5 501 A 1 HETATM 13 C CAQ YS5 . . . C 3 -16.791 27.92 -4.613 1 61.92 ? CAQ YS5 501 A 1 HETATM 14 C CAP YS5 . . . C 3 -15.638 28.01 -5.604 1 62.41 ? CAP YS5 501 A 1 HETATM 15 C CAT YS5 . . . C 3 -15.218 26.64 -6.204 1 63.95 ? CAT YS5 501 A 1 HETATM 16 C CBI YS5 . . . C 3 -15.1 25.578 -5.148 1 63.98 ? CBI YS5 501 A 1 HETATM 17 C CAF YS5 . . . C 3 -13.887 25.892 -4.198 1 63.28 ? CAF YS5 501 A 1 HETATM 18 C CBG YS5 . . . C 3 -16.455 25.588 -4.475 1 63.43 ? CBG YS5 501 A 1 HETATM 19 C CAU YS5 . . . C 3 -16.507 24.285 -3.685 1 63.9 ? CAU YS5 501 A 1 HETATM 20 C CAS YS5 . . . C 3 -15.566 23.301 -4.487 1 65.41 ? CAS YS5 501 A 1 HETATM 21 C CBF YS5 . . . C 3 -15.038 24.114 -5.69 1 65.85 ? CBF YS5 501 A 1 HETATM 22 C CBD YS5 . . . C 3 -13.62 23.614 -6.157 1 67.24 ? CBD YS5 501 A 1 HETATM 23 C CAE YS5 . . . C 3 -13.1 24.476 -7.319 1 67.91 ? CAE YS5 501 A 1 HETATM 24 C CBE YS5 . . . C 3 -13.589 22.13 -6.634 1 69.58 ? CBE YS5 501 A 1 HETATM 25 C CAX YS5 . . . C 3 -12.13 21.679 -6.964 1 71.34 ? CAX YS5 501 A 1 HETATM 26 C CBH YS5 . . . C 3 -11.734 20.25 -6.528 1 72.83 ? CBH YS5 501 A 1 HETATM 27 C CAN YS5 . . . C 3 -10.208 20.111 -6.534 1 74.21 ? CAN YS5 501 A 1 HETATM 28 C CAD YS5 . . . C 3 -9.553 21.442 -6.15 1 72.58 ? CAD YS5 501 A 1 HETATM 29 O OAI YS5 . . . C 3 -12.173 19.278 -7.457 1 75.52 ? OAI YS5 501 A 1 HETATM 30 C CAM YS5 . . . C 3 -12.32 19.932 -5.136 1 70.79 ? CAM YS5 501 A 1 HETATM 31 C CAC YS5 . . . C 3 -11.791 18.585 -4.603 1 72.01 ? CAC YS5 501 A 1 HETATM 32 C CAR YS5 . . . C 3 -14.422 21.94 -7.893 1 71.36 ? CAR YS5 501 A 1 HETATM 33 C CAO YS5 . . . C 3 -15.89 22.036 -7.526 1 70.54 ? CAO YS5 501 A 1 HETATM 34 C CAL YS5 . . . C 3 -16.776 21.396 -8.6 1 73.15 ? CAL YS5 501 A 1 HETATM 35 C CAB YS5 . . . C 3 -17.802 20.586 -7.81 1 73.51 ? CAB YS5 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #