data_3VS0 # _model_server_result.job_id J3ukuygQfV8_VjvbgLSZWQ _model_server_result.datetime_utc '2024-11-25 13:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3VS0 # _exptl.entry_id 3VS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VS0 _cell.length_a 73.72 _cell.length_b 96.05 _cell.length_c 181.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLU 412 A GLU 489 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc4 C CA CA . A CA 601 1_555 B OE1 GLU 412 B GLU 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc5 B O GLU 447 B GLU 524 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VS0 _atom_sites.fract_transf_matrix[1][1] 0.013565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 600 CA CA . D 3 CL A 1 603 601 CL CL . E 4 VS0 A 1 602 1 VS0 LIG . F 2 CA B 1 601 600 CA CA . G 3 CL B 1 603 601 CL CL . H 4 VS0 B 1 602 1 VS0 LIG . I 5 HOH A 1 701 2 HOH HOH . I 5 HOH A 2 702 5 HOH HOH . I 5 HOH A 3 703 6 HOH HOH . I 5 HOH A 4 704 11 HOH HOH . I 5 HOH A 5 705 12 HOH HOH . I 5 HOH A 6 706 13 HOH HOH . I 5 HOH A 7 707 14 HOH HOH . I 5 HOH A 8 708 16 HOH HOH . I 5 HOH A 9 709 17 HOH HOH . I 5 HOH A 10 710 20 HOH HOH . I 5 HOH A 11 711 21 HOH HOH . I 5 HOH A 12 712 23 HOH HOH . I 5 HOH A 13 713 28 HOH HOH . I 5 HOH A 14 714 29 HOH HOH . I 5 HOH A 15 715 30 HOH HOH . I 5 HOH A 16 716 32 HOH HOH . I 5 HOH A 17 717 33 HOH HOH . I 5 HOH A 18 718 36 HOH HOH . I 5 HOH A 19 719 40 HOH HOH . I 5 HOH A 20 720 44 HOH HOH . I 5 HOH A 21 721 45 HOH HOH . I 5 HOH A 22 722 47 HOH HOH . I 5 HOH A 23 723 48 HOH HOH . I 5 HOH A 24 724 49 HOH HOH . I 5 HOH A 25 725 50 HOH HOH . I 5 HOH A 26 726 51 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 3 HOH HOH . J 5 HOH B 3 703 4 HOH HOH . J 5 HOH B 4 704 7 HOH HOH . J 5 HOH B 5 705 8 HOH HOH . J 5 HOH B 6 706 9 HOH HOH . J 5 HOH B 7 707 10 HOH HOH . J 5 HOH B 8 708 15 HOH HOH . J 5 HOH B 9 709 18 HOH HOH . J 5 HOH B 10 710 19 HOH HOH . J 5 HOH B 11 711 22 HOH HOH . J 5 HOH B 12 712 24 HOH HOH . J 5 HOH B 13 713 25 HOH HOH . J 5 HOH B 14 714 26 HOH HOH . J 5 HOH B 15 715 27 HOH HOH . J 5 HOH B 16 716 31 HOH HOH . J 5 HOH B 17 717 34 HOH HOH . J 5 HOH B 18 718 35 HOH HOH . J 5 HOH B 19 719 37 HOH HOH . J 5 HOH B 20 720 38 HOH HOH . J 5 HOH B 21 721 39 HOH HOH . J 5 HOH B 22 722 41 HOH HOH . J 5 HOH B 23 723 42 HOH HOH . J 5 HOH B 24 724 43 HOH HOH . J 5 HOH B 25 725 46 HOH HOH . J 5 HOH B 26 726 52 HOH HOH . J 5 HOH B 27 727 53 HOH HOH . J 5 HOH B 28 728 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -25.991 _atom_site.Cartn_y 18.908 _atom_site.Cartn_z -44.052 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #