data_3VS0 # _model_server_result.job_id ZrT2eqyQvwQxgip3zXqIvQ _model_server_result.datetime_utc '2024-11-25 13:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 3VS0 # _exptl.entry_id 3VS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.472 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VS0 _cell.length_a 73.72 _cell.length_b 96.05 _cell.length_c 181.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLU 412 A GLU 489 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc4 C CA CA . A CA 601 1_555 B OE1 GLU 412 B GLU 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc5 B O GLU 447 B GLU 524 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? # _chem_comp.formula 'C24 H23 N5 O' _chem_comp.formula_weight 397.472 _chem_comp.id VS0 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C6 VS0 doub 405 n y C2 C1 VS0 sing 406 n y C6 C15 VS0 sing 407 n y O30 C19 VS0 doub 408 n n C1 C3 VS0 doub 409 n y C15 C19 VS0 sing 410 n n C15 C7 VS0 doub 411 n y C19 N29 VS0 sing 412 n n C3 C7 VS0 sing 413 n y C8 C4 VS0 doub 414 n y C8 C16 VS0 sing 415 n y C4 C13 VS0 sing 416 n y N29 C16 VS0 sing 417 n n C16 C9 VS0 doub 418 n y C23 C21 VS0 sing 419 n n C23 C24 VS0 sing 420 n n C13 C14 VS0 sing 421 n n C13 C5 VS0 doub 422 n y C21 C20 VS0 sing 423 n n C9 C5 VS0 sing 424 n y C14 C10 VS0 doub 425 n y C14 C12 VS0 sing 426 n y C10 N27 VS0 sing 427 n y N28 C18 VS0 sing 428 n n C12 C18 VS0 sing 429 n y C12 C17 VS0 doub 430 n y N27 C24 VS0 sing 431 n n N27 C17 VS0 sing 432 n y C24 C22 VS0 sing 433 n n C18 N26 VS0 doub 434 n y C17 N25 VS0 sing 435 n y N26 C11 VS0 sing 436 n y N25 C11 VS0 doub 437 n y C20 C22 VS0 sing 438 n n C6 H1 VS0 sing 439 n n C2 H2 VS0 sing 440 n n C1 H3 VS0 sing 441 n n C3 H4 VS0 sing 442 n n C7 H5 VS0 sing 443 n n N29 H6 VS0 sing 444 n n C8 H7 VS0 sing 445 n n C4 H8 VS0 sing 446 n n C5 H9 VS0 sing 447 n n C9 H10 VS0 sing 448 n n N28 H11 VS0 sing 449 n n N28 H12 VS0 sing 450 n n C11 H13 VS0 sing 451 n n C10 H14 VS0 sing 452 n n C24 H15 VS0 sing 453 n n C23 H16 VS0 sing 454 n n C23 H17 VS0 sing 455 n n C21 H18 VS0 sing 456 n n C21 H19 VS0 sing 457 n n C20 H20 VS0 sing 458 n n C20 H21 VS0 sing 459 n n C22 H22 VS0 sing 460 n n C22 H23 VS0 sing 461 n n # _atom_sites.entry_id 3VS0 _atom_sites.fract_transf_matrix[1][1] 0.013565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 600 CA CA . D 3 CL A 1 603 601 CL CL . E 4 VS0 A 1 602 1 VS0 LIG . F 2 CA B 1 601 600 CA CA . G 3 CL B 1 603 601 CL CL . H 4 VS0 B 1 602 1 VS0 LIG . I 5 HOH A 1 701 2 HOH HOH . I 5 HOH A 2 702 5 HOH HOH . I 5 HOH A 3 703 6 HOH HOH . I 5 HOH A 4 704 11 HOH HOH . I 5 HOH A 5 705 12 HOH HOH . I 5 HOH A 6 706 13 HOH HOH . I 5 HOH A 7 707 14 HOH HOH . I 5 HOH A 8 708 16 HOH HOH . I 5 HOH A 9 709 17 HOH HOH . I 5 HOH A 10 710 20 HOH HOH . I 5 HOH A 11 711 21 HOH HOH . I 5 HOH A 12 712 23 HOH HOH . I 5 HOH A 13 713 28 HOH HOH . I 5 HOH A 14 714 29 HOH HOH . I 5 HOH A 15 715 30 HOH HOH . I 5 HOH A 16 716 32 HOH HOH . I 5 HOH A 17 717 33 HOH HOH . I 5 HOH A 18 718 36 HOH HOH . I 5 HOH A 19 719 40 HOH HOH . I 5 HOH A 20 720 44 HOH HOH . I 5 HOH A 21 721 45 HOH HOH . I 5 HOH A 22 722 47 HOH HOH . I 5 HOH A 23 723 48 HOH HOH . I 5 HOH A 24 724 49 HOH HOH . I 5 HOH A 25 725 50 HOH HOH . I 5 HOH A 26 726 51 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 3 HOH HOH . J 5 HOH B 3 703 4 HOH HOH . J 5 HOH B 4 704 7 HOH HOH . J 5 HOH B 5 705 8 HOH HOH . J 5 HOH B 6 706 9 HOH HOH . J 5 HOH B 7 707 10 HOH HOH . J 5 HOH B 8 708 15 HOH HOH . J 5 HOH B 9 709 18 HOH HOH . J 5 HOH B 10 710 19 HOH HOH . J 5 HOH B 11 711 22 HOH HOH . J 5 HOH B 12 712 24 HOH HOH . J 5 HOH B 13 713 25 HOH HOH . J 5 HOH B 14 714 26 HOH HOH . J 5 HOH B 15 715 27 HOH HOH . J 5 HOH B 16 716 31 HOH HOH . J 5 HOH B 17 717 34 HOH HOH . J 5 HOH B 18 718 35 HOH HOH . J 5 HOH B 19 719 37 HOH HOH . J 5 HOH B 20 720 38 HOH HOH . J 5 HOH B 21 721 39 HOH HOH . J 5 HOH B 22 722 41 HOH HOH . J 5 HOH B 23 723 42 HOH HOH . J 5 HOH B 24 724 43 HOH HOH . J 5 HOH B 25 725 46 HOH HOH . J 5 HOH B 26 726 52 HOH HOH . J 5 HOH B 27 727 53 HOH HOH . J 5 HOH B 28 728 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O30 VS0 . . . H 4 -33.356 -4.808 -73.518 1 80.29 ? O30 VS0 602 B 1 HETATM 2 C C19 VS0 . . . H 4 -33.599 -4.748 -72.327 1 74.02 ? C19 VS0 602 B 1 HETATM 3 C C15 VS0 . . . H 4 -34.065 -5.986 -71.615 1 81.1 ? C15 VS0 602 B 1 HETATM 4 C C6 VS0 . . . H 4 -33.501 -7.214 -71.943 1 80.63 ? C6 VS0 602 B 1 HETATM 5 C C2 VS0 . . . H 4 -33.91 -8.368 -71.288 1 81.72 ? C2 VS0 602 B 1 HETATM 6 C C1 VS0 . . . H 4 -34.88 -8.294 -70.296 1 78.87 ? C1 VS0 602 B 1 HETATM 7 C C3 VS0 . . . H 4 -35.44 -7.066 -69.959 1 82.27 ? C3 VS0 602 B 1 HETATM 8 C C7 VS0 . . . H 4 -35.031 -5.91 -70.615 1 85.18 ? C7 VS0 602 B 1 HETATM 9 N N29 VS0 . . . H 4 -33.457 -3.623 -71.632 1 72.7 ? N29 VS0 602 B 1 HETATM 10 C C16 VS0 . . . H 4 -33.006 -2.43 -72.215 1 70.74 ? C16 VS0 602 B 1 HETATM 11 C C8 VS0 . . . H 4 -31.822 -1.857 -71.765 1 64.75 ? C8 VS0 602 B 1 HETATM 12 C C4 VS0 . . . H 4 -31.361 -0.666 -72.312 1 58.91 ? C4 VS0 602 B 1 HETATM 13 C C13 VS0 . . . H 4 -32.082 -0.027 -73.314 1 59.89 ? C13 VS0 602 B 1 HETATM 14 C C5 VS0 . . . H 4 -33.266 -0.606 -73.761 1 60.4 ? C5 VS0 602 B 1 HETATM 15 C C9 VS0 . . . H 4 -33.738 -1.792 -73.209 1 65.33 ? C9 VS0 602 B 1 HETATM 16 C C14 VS0 . . . H 4 -31.553 1.255 -73.883 1 52.13 ? C14 VS0 602 B 1 HETATM 17 C C12 VS0 . . . H 4 -32.245 2.375 -74.363 1 52.39 ? C12 VS0 602 B 1 HETATM 18 C C18 VS0 . . . H 4 -33.587 2.739 -74.519 1 53.39 ? C18 VS0 602 B 1 HETATM 19 N N28 VS0 . . . H 4 -34.614 1.933 -74.159 1 51.18 ? N28 VS0 602 B 1 HETATM 20 N N26 VS0 . . . H 4 -33.892 3.944 -75.045 1 53.4 ? N26 VS0 602 B 1 HETATM 21 C C11 VS0 . . . H 4 -32.935 4.798 -75.421 1 57.15 ? C11 VS0 602 B 1 HETATM 22 N N25 VS0 . . . H 4 -31.644 4.484 -75.285 1 51.46 ? N25 VS0 602 B 1 HETATM 23 C C17 VS0 . . . H 4 -31.276 3.289 -74.764 1 55.03 ? C17 VS0 602 B 1 HETATM 24 N N27 VS0 . . . H 4 -30.063 2.77 -74.546 1 59.44 ? N27 VS0 602 B 1 HETATM 25 C C10 VS0 . . . H 4 -30.201 1.555 -74 1 50.04 ? C10 VS0 602 B 1 HETATM 26 C C24 VS0 . . . H 4 -28.782 3.469 -74.84 1 62.84 ? C24 VS0 602 B 1 HETATM 27 C C23 VS0 . . . H 4 -27.876 2.634 -75.74 1 58.65 ? C23 VS0 602 B 1 HETATM 28 C C21 VS0 . . . H 4 -26.523 2.512 -75.046 1 57.79 ? C21 VS0 602 B 1 HETATM 29 C C20 VS0 . . . H 4 -26.542 3.462 -73.856 1 61.03 ? C20 VS0 602 B 1 HETATM 30 C C22 VS0 . . . H 4 -28.008 3.747 -73.556 1 60.75 ? C22 VS0 602 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #