data_3VS1 # _model_server_result.job_id aQ6f_WB7tnm5JTVOI6rogQ _model_server_result.datetime_utc '2024-10-17 19:28:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 3VS1 # _exptl.entry_id 3VS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.21 _cell.angle_gamma 90 _cell.entry_id 3VS1 _cell.length_a 49.03 _cell.length_b 73.27 _cell.length_c 179.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc4 I O HOH . A HOH 750 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc5 B O GLU 447 B GLU 524 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc6 B O PTR 450 B PTR 527 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VS1 _atom_sites.fract_transf_matrix[1][1] 0.020396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 600 CA CA . D 3 CL A 1 603 601 CL CL . E 4 VSA A 1 602 1 VSA LIG . F 2 CA B 1 601 600 CA CA . G 3 CL B 1 603 601 CL CL . H 4 VSA B 1 602 1 VSA LIG . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 3 HOH HOH . I 5 HOH A 4 704 4 HOH HOH . I 5 HOH A 5 705 5 HOH HOH . I 5 HOH A 6 706 6 HOH HOH . I 5 HOH A 7 707 8 HOH HOH . I 5 HOH A 8 708 9 HOH HOH . I 5 HOH A 9 709 10 HOH HOH . I 5 HOH A 10 710 11 HOH HOH . I 5 HOH A 11 711 12 HOH HOH . I 5 HOH A 12 712 13 HOH HOH . I 5 HOH A 13 713 16 HOH HOH . I 5 HOH A 14 714 19 HOH HOH . I 5 HOH A 15 715 20 HOH HOH . I 5 HOH A 16 716 22 HOH HOH . I 5 HOH A 17 717 23 HOH HOH . I 5 HOH A 18 718 25 HOH HOH . I 5 HOH A 19 719 26 HOH HOH . I 5 HOH A 20 720 27 HOH HOH . I 5 HOH A 21 721 28 HOH HOH . I 5 HOH A 22 722 32 HOH HOH . I 5 HOH A 23 723 33 HOH HOH . I 5 HOH A 24 724 37 HOH HOH . I 5 HOH A 25 725 38 HOH HOH . I 5 HOH A 26 726 39 HOH HOH . I 5 HOH A 27 727 41 HOH HOH . I 5 HOH A 28 728 43 HOH HOH . I 5 HOH A 29 729 44 HOH HOH . I 5 HOH A 30 730 45 HOH HOH . I 5 HOH A 31 731 46 HOH HOH . I 5 HOH A 32 732 52 HOH HOH . I 5 HOH A 33 733 56 HOH HOH . I 5 HOH A 34 734 57 HOH HOH . I 5 HOH A 35 735 58 HOH HOH . I 5 HOH A 36 736 60 HOH HOH . I 5 HOH A 37 737 61 HOH HOH . I 5 HOH A 38 738 62 HOH HOH . I 5 HOH A 39 739 63 HOH HOH . I 5 HOH A 40 740 66 HOH HOH . I 5 HOH A 41 741 67 HOH HOH . I 5 HOH A 42 742 69 HOH HOH . I 5 HOH A 43 743 71 HOH HOH . I 5 HOH A 44 744 72 HOH HOH . I 5 HOH A 45 745 73 HOH HOH . I 5 HOH A 46 746 74 HOH HOH . I 5 HOH A 47 747 76 HOH HOH . I 5 HOH A 48 748 77 HOH HOH . I 5 HOH A 49 749 78 HOH HOH . I 5 HOH A 50 750 79 HOH HOH . I 5 HOH A 51 751 80 HOH HOH . I 5 HOH A 52 752 81 HOH HOH . J 5 HOH B 1 701 7 HOH HOH . J 5 HOH B 2 702 14 HOH HOH . J 5 HOH B 3 703 15 HOH HOH . J 5 HOH B 4 704 17 HOH HOH . J 5 HOH B 5 705 18 HOH HOH . J 5 HOH B 6 706 21 HOH HOH . J 5 HOH B 7 707 24 HOH HOH . J 5 HOH B 8 708 29 HOH HOH . J 5 HOH B 9 709 30 HOH HOH . J 5 HOH B 10 710 31 HOH HOH . J 5 HOH B 11 711 34 HOH HOH . J 5 HOH B 12 712 35 HOH HOH . J 5 HOH B 13 713 36 HOH HOH . J 5 HOH B 14 714 40 HOH HOH . J 5 HOH B 15 715 42 HOH HOH . J 5 HOH B 16 716 47 HOH HOH . J 5 HOH B 17 717 48 HOH HOH . J 5 HOH B 18 718 49 HOH HOH . J 5 HOH B 19 719 50 HOH HOH . J 5 HOH B 20 720 51 HOH HOH . J 5 HOH B 21 721 53 HOH HOH . J 5 HOH B 22 722 54 HOH HOH . J 5 HOH B 23 723 55 HOH HOH . J 5 HOH B 24 724 59 HOH HOH . J 5 HOH B 25 725 64 HOH HOH . J 5 HOH B 26 726 65 HOH HOH . J 5 HOH B 27 727 68 HOH HOH . J 5 HOH B 28 728 70 HOH HOH . J 5 HOH B 29 729 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.69 _atom_site.Cartn_y -10.532 _atom_site.Cartn_z 39.611 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #