data_3VS2 # _model_server_result.job_id W8aSHgWjkElYhMwbBQD-YQ _model_server_result.datetime_utc '2024-10-17 19:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3VS2 # _exptl.entry_id 3VS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[cis-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.26 _cell.angle_gamma 90 _cell.entry_id 3VS2 _cell.length_a 48.51 _cell.length_b 73.09 _cell.length_c 180.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc4 A OE2 GLU 452 A GLU 529 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 D CA CA . A CA 602 1_555 B OE2 GLU 413 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc6 B O GLU 447 B GLU 524 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc7 B O PTR 450 B PTR 527 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? # _chem_comp.formula 'C29 H34 N6 O' _chem_comp.formula_weight 482.62 _chem_comp.id VSB _chem_comp.mon_nstd_flag . _chem_comp.name 7-[cis-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAS CAR VSB sing 405 n n CAS CAT VSB sing 406 n n CAR CAQ VSB sing 407 n n C2 N3 VSB doub 408 n y C2 N1 VSB sing 409 n y N3 C4 VSB sing 410 n y N1 C6 VSB doub 411 n y CAQ NAG VSB sing 412 n n CAQ CAV VSB sing 413 n n C4 NAG VSB sing 414 n y C4 C5 VSB doub 415 n y C6 C5 VSB sing 416 n y C6 NAK VSB sing 417 n n NAG CAH VSB sing 418 n y C5 CAI VSB sing 419 n y CAT NAW VSB sing 420 n n CAT CAU VSB sing 421 n n CBB CBA VSB sing 422 n n CBB NAW VSB sing 423 n n CAI CAH VSB doub 424 n y CAI CAJ VSB sing 425 n n CAL CAM VSB doub 426 n y CAL CAJ VSB sing 427 n y CBA NAZ VSB sing 428 n n CAV CAU VSB sing 429 n n NAW CAX VSB sing 430 n n CAM CAN VSB sing 431 n y CAJ CAP VSB doub 432 n y CBC NAZ VSB sing 433 n n NAZ CAY VSB sing 434 n n CAX CAY VSB sing 435 n n CAN OBD VSB sing 436 n n CAN CAO VSB doub 437 n y CAP CAO VSB sing 438 n y OBD CBE VSB sing 439 n n CBE CBJ VSB doub 440 n y CBE CBF VSB sing 441 n y CBJ CBI VSB sing 442 n y CBF CBG VSB doub 443 n y CBI CBH VSB doub 444 n y CBG CBH VSB sing 445 n y CAX H1 VSB sing 446 n n CAY H2 VSB sing 447 n n CAY H3 VSB sing 448 n n CBC H5 VSB sing 449 n n CBC H6 VSB sing 450 n n CBC H7 VSB sing 451 n n CBA H8 VSB sing 452 n n CBA H9 VSB sing 453 n n CBB H10 VSB sing 454 n n CAT H11 VSB sing 455 n n CAU H12 VSB sing 456 n n CAV H13 VSB sing 457 n n CAV H14 VSB sing 458 n n CAS H15 VSB sing 459 n n CAS H16 VSB sing 460 n n CAR H17 VSB sing 461 n n CAR H18 VSB sing 462 n n CAQ H19 VSB sing 463 n n CAH H20 VSB sing 464 n n C2 H22 VSB sing 465 n n NAK H23 VSB sing 466 n n NAK H24 VSB sing 467 n n CAP H26 VSB sing 468 n n CAO H27 VSB sing 469 n n CAL H28 VSB sing 470 n n CAM H29 VSB sing 471 n n CBF H30 VSB sing 472 n n CBG H31 VSB sing 473 n n CBH H32 VSB sing 474 n n CBI H33 VSB sing 475 n n CBJ H34 VSB sing 476 n n CAX H35 VSB sing 477 n n CBB H4 VSB sing 478 n n CAU H36 VSB sing 479 n n # _atom_sites.entry_id 3VS2 _atom_sites.fract_transf_matrix[1][1] 0.020614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002261 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VSB A 1 601 1 VSB LIG . D 3 CA A 1 602 600 CA CA . E 4 CL A 1 603 601 CL CL . F 3 CA B 1 602 600 CA CA . G 2 VSB B 1 601 1 VSB LIG . H 4 CL B 1 603 601 CL CL . I 5 HOH A 1 701 2 HOH HOH . I 5 HOH A 2 702 3 HOH HOH . I 5 HOH A 3 703 5 HOH HOH . I 5 HOH A 4 704 7 HOH HOH . I 5 HOH A 5 705 9 HOH HOH . I 5 HOH A 6 706 12 HOH HOH . I 5 HOH A 7 707 15 HOH HOH . I 5 HOH A 8 708 17 HOH HOH . I 5 HOH A 9 709 20 HOH HOH . I 5 HOH A 10 710 22 HOH HOH . I 5 HOH A 11 711 23 HOH HOH . I 5 HOH A 12 712 25 HOH HOH . I 5 HOH A 13 713 26 HOH HOH . I 5 HOH A 14 714 28 HOH HOH . I 5 HOH A 15 715 29 HOH HOH . I 5 HOH A 16 716 30 HOH HOH . I 5 HOH A 17 717 31 HOH HOH . I 5 HOH A 18 718 37 HOH HOH . I 5 HOH A 19 719 39 HOH HOH . I 5 HOH A 20 720 40 HOH HOH . I 5 HOH A 21 721 42 HOH HOH . I 5 HOH A 22 722 43 HOH HOH . I 5 HOH A 23 723 44 HOH HOH . I 5 HOH A 24 724 46 HOH HOH . I 5 HOH A 25 725 49 HOH HOH . I 5 HOH A 26 726 50 HOH HOH . I 5 HOH A 27 727 51 HOH HOH . I 5 HOH A 28 728 54 HOH HOH . I 5 HOH A 29 729 55 HOH HOH . I 5 HOH A 30 730 56 HOH HOH . I 5 HOH A 31 731 58 HOH HOH . I 5 HOH A 32 732 61 HOH HOH . I 5 HOH A 33 733 63 HOH HOH . I 5 HOH A 34 734 66 HOH HOH . I 5 HOH A 35 735 67 HOH HOH . I 5 HOH A 36 736 68 HOH HOH . I 5 HOH A 37 737 70 HOH HOH . I 5 HOH A 38 738 71 HOH HOH . I 5 HOH A 39 739 72 HOH HOH . I 5 HOH A 40 740 74 HOH HOH . I 5 HOH A 41 741 76 HOH HOH . I 5 HOH A 42 742 77 HOH HOH . I 5 HOH A 43 743 78 HOH HOH . I 5 HOH A 44 744 81 HOH HOH . I 5 HOH A 45 745 82 HOH HOH . I 5 HOH A 46 746 83 HOH HOH . I 5 HOH A 47 747 84 HOH HOH . I 5 HOH A 48 748 85 HOH HOH . I 5 HOH A 49 749 87 HOH HOH . I 5 HOH A 50 750 88 HOH HOH . I 5 HOH A 51 751 89 HOH HOH . I 5 HOH A 52 752 90 HOH HOH . I 5 HOH A 53 753 92 HOH HOH . I 5 HOH A 54 754 93 HOH HOH . I 5 HOH A 55 755 94 HOH HOH . I 5 HOH A 56 756 96 HOH HOH . I 5 HOH A 57 757 97 HOH HOH . I 5 HOH A 58 758 98 HOH HOH . I 5 HOH A 59 759 101 HOH HOH . I 5 HOH A 60 760 106 HOH HOH . I 5 HOH A 61 761 107 HOH HOH . I 5 HOH A 62 762 110 HOH HOH . I 5 HOH A 63 763 111 HOH HOH . I 5 HOH A 64 764 112 HOH HOH . I 5 HOH A 65 765 117 HOH HOH . I 5 HOH A 66 766 120 HOH HOH . I 5 HOH A 67 767 122 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 8 HOH HOH . J 5 HOH B 5 705 10 HOH HOH . J 5 HOH B 6 706 11 HOH HOH . J 5 HOH B 7 707 13 HOH HOH . J 5 HOH B 8 708 14 HOH HOH . J 5 HOH B 9 709 16 HOH HOH . J 5 HOH B 10 710 18 HOH HOH . J 5 HOH B 11 711 19 HOH HOH . J 5 HOH B 12 712 21 HOH HOH . J 5 HOH B 13 713 24 HOH HOH . J 5 HOH B 14 714 27 HOH HOH . J 5 HOH B 15 715 32 HOH HOH . J 5 HOH B 16 716 33 HOH HOH . J 5 HOH B 17 717 34 HOH HOH . J 5 HOH B 18 718 35 HOH HOH . J 5 HOH B 19 719 36 HOH HOH . J 5 HOH B 20 720 38 HOH HOH . J 5 HOH B 21 721 41 HOH HOH . J 5 HOH B 22 722 45 HOH HOH . J 5 HOH B 23 723 47 HOH HOH . J 5 HOH B 24 724 48 HOH HOH . J 5 HOH B 25 725 52 HOH HOH . J 5 HOH B 26 726 53 HOH HOH . J 5 HOH B 27 727 57 HOH HOH . J 5 HOH B 28 728 59 HOH HOH . J 5 HOH B 29 729 60 HOH HOH . J 5 HOH B 30 730 62 HOH HOH . J 5 HOH B 31 731 64 HOH HOH . J 5 HOH B 32 732 65 HOH HOH . J 5 HOH B 33 733 69 HOH HOH . J 5 HOH B 34 734 73 HOH HOH . J 5 HOH B 35 735 75 HOH HOH . J 5 HOH B 36 736 79 HOH HOH . J 5 HOH B 37 737 80 HOH HOH . J 5 HOH B 38 738 86 HOH HOH . J 5 HOH B 39 739 91 HOH HOH . J 5 HOH B 40 740 95 HOH HOH . J 5 HOH B 41 741 99 HOH HOH . J 5 HOH B 42 742 100 HOH HOH . J 5 HOH B 43 743 102 HOH HOH . J 5 HOH B 44 744 103 HOH HOH . J 5 HOH B 45 745 104 HOH HOH . J 5 HOH B 46 746 105 HOH HOH . J 5 HOH B 47 747 108 HOH HOH . J 5 HOH B 48 748 109 HOH HOH . J 5 HOH B 49 749 113 HOH HOH . J 5 HOH B 50 750 114 HOH HOH . J 5 HOH B 51 751 115 HOH HOH . J 5 HOH B 52 752 116 HOH HOH . J 5 HOH B 53 753 118 HOH HOH . J 5 HOH B 54 754 119 HOH HOH . J 5 HOH B 55 755 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAX VSB . . . C 2 2.507 -11.469 14.462 1 102.34 ? CAX VSB 601 A 1 HETATM 2 C CAY VSB . . . C 2 2.21 -12.68 15.167 1 84.3 ? CAY VSB 601 A 1 HETATM 3 N NAZ VSB . . . C 2 1.656 -13.369 13.978 1 97.71 ? NAZ VSB 601 A 1 HETATM 4 C CBC VSB . . . C 2 2.198 -14.605 13.529 1 79.77 ? CBC VSB 601 A 1 HETATM 5 C CBA VSB . . . C 2 0.737 -12.747 13.081 1 104.98 ? CBA VSB 601 A 1 HETATM 6 C CBB VSB . . . C 2 2.114 -11.865 12.826 1 73.02 ? CBB VSB 601 A 1 HETATM 7 N NAW VSB . . . C 2 3.193 -10.92 13.442 1 96.61 ? NAW VSB 601 A 1 HETATM 8 C CAT VSB . . . C 2 4.311 -10.487 12.589 1 87.18 ? CAT VSB 601 A 1 HETATM 9 C CAU VSB . . . C 2 4.56 -9.723 14.053 1 59.59 ? CAU VSB 601 A 1 HETATM 10 C CAV VSB . . . C 2 5.561 -9.219 13.324 1 50.07 ? CAV VSB 601 A 1 HETATM 11 C CAS VSB . . . C 2 4.274 -9.88 11.036 1 58.28 ? CAS VSB 601 A 1 HETATM 12 C CAR VSB . . . C 2 3.574 -8.782 11.234 1 57.15 ? CAR VSB 601 A 1 HETATM 13 C CAQ VSB . . . C 2 4.889 -8.334 12.142 1 55.27 ? CAQ VSB 601 A 1 HETATM 14 N NAG VSB . . . C 2 4.055 -7.095 12.383 1 55.24 ? NAG VSB 601 A 1 HETATM 15 C CAH VSB . . . C 2 2.911 -6.888 12.999 1 57.39 ? CAH VSB 601 A 1 HETATM 16 C C4 VSB . . . C 2 4.574 -5.832 12.187 1 47.92 ? C4 VSB 601 A 1 HETATM 17 N N3 VSB . . . C 2 5.723 -5.316 11.679 1 51.29 ? N3 VSB 601 A 1 HETATM 18 C C2 VSB . . . C 2 5.959 -4 11.527 1 48.08 ? C2 VSB 601 A 1 HETATM 19 N N1 VSB . . . C 2 5.079 -3.066 11.85 1 47.81 ? N1 VSB 601 A 1 HETATM 20 C C6 VSB . . . C 2 3.897 -3.475 12.346 1 47.57 ? C6 VSB 601 A 1 HETATM 21 N NAK VSB . . . C 2 3.028 -2.501 12.668 1 56.91 ? NAK VSB 601 A 1 HETATM 22 C C5 VSB . . . C 2 3.622 -4.865 12.517 1 34.37 ? C5 VSB 601 A 1 HETATM 23 C CAI VSB . . . C 2 2.503 -5.619 12.914 1 50.46 ? CAI VSB 601 A 1 HETATM 24 C CAJ VSB . . . C 2 1.295 -5.155 13.496 1 41.62 ? CAJ VSB 601 A 1 HETATM 25 C CAP VSB . . . C 2 0.888 -5.522 14.781 1 46.67 ? CAP VSB 601 A 1 HETATM 26 C CAO VSB . . . C 2 -0.279 -4.993 15.362 1 41.5 ? CAO VSB 601 A 1 HETATM 27 C CAL VSB . . . C 2 0.593 -4.1 12.934 1 47.79 ? CAL VSB 601 A 1 HETATM 28 C CAM VSB . . . C 2 -0.609 -3.635 13.443 1 42.83 ? CAM VSB 601 A 1 HETATM 29 C CAN VSB . . . C 2 -1.056 -4.052 14.68 1 41.7 ? CAN VSB 601 A 1 HETATM 30 O OBD VSB . . . C 2 -2.219 -3.468 15.122 1 52.43 ? OBD VSB 601 A 1 HETATM 31 C CBE VSB . . . C 2 -2.449 -3.003 16.375 1 50.46 ? CBE VSB 601 A 1 HETATM 32 C CBF VSB . . . C 2 -1.436 -2.341 17.049 1 58.75 ? CBF VSB 601 A 1 HETATM 33 C CBG VSB . . . C 2 -1.669 -1.819 18.314 1 49.72 ? CBG VSB 601 A 1 HETATM 34 C CBH VSB . . . C 2 -2.925 -1.933 18.895 1 70 ? CBH VSB 601 A 1 HETATM 35 C CBI VSB . . . C 2 -3.952 -2.572 18.209 1 78.7 ? CBI VSB 601 A 1 HETATM 36 C CBJ VSB . . . C 2 -3.72 -3.09 16.939 1 48.96 ? CBJ VSB 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #