data_3VS2 # _model_server_result.job_id jOYIqaWDyoFqK49eEXO-1Q _model_server_result.datetime_utc '2024-10-17 19:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3VS2 # _exptl.entry_id 3VS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.26 _cell.angle_gamma 90 _cell.entry_id 3VS2 _cell.length_a 48.51 _cell.length_b 73.09 _cell.length_c 180.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc4 A OE2 GLU 452 A GLU 529 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 D CA CA . A CA 602 1_555 B OE2 GLU 413 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc6 B O GLU 447 B GLU 524 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc7 B O PTR 450 B PTR 527 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VS2 _atom_sites.fract_transf_matrix[1][1] 0.020614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002261 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VSB A 1 601 1 VSB LIG . D 3 CA A 1 602 600 CA CA . E 4 CL A 1 603 601 CL CL . F 3 CA B 1 602 600 CA CA . G 2 VSB B 1 601 1 VSB LIG . H 4 CL B 1 603 601 CL CL . I 5 HOH A 1 701 2 HOH HOH . I 5 HOH A 2 702 3 HOH HOH . I 5 HOH A 3 703 5 HOH HOH . I 5 HOH A 4 704 7 HOH HOH . I 5 HOH A 5 705 9 HOH HOH . I 5 HOH A 6 706 12 HOH HOH . I 5 HOH A 7 707 15 HOH HOH . I 5 HOH A 8 708 17 HOH HOH . I 5 HOH A 9 709 20 HOH HOH . I 5 HOH A 10 710 22 HOH HOH . I 5 HOH A 11 711 23 HOH HOH . I 5 HOH A 12 712 25 HOH HOH . I 5 HOH A 13 713 26 HOH HOH . I 5 HOH A 14 714 28 HOH HOH . I 5 HOH A 15 715 29 HOH HOH . I 5 HOH A 16 716 30 HOH HOH . I 5 HOH A 17 717 31 HOH HOH . I 5 HOH A 18 718 37 HOH HOH . I 5 HOH A 19 719 39 HOH HOH . I 5 HOH A 20 720 40 HOH HOH . I 5 HOH A 21 721 42 HOH HOH . I 5 HOH A 22 722 43 HOH HOH . I 5 HOH A 23 723 44 HOH HOH . I 5 HOH A 24 724 46 HOH HOH . I 5 HOH A 25 725 49 HOH HOH . I 5 HOH A 26 726 50 HOH HOH . I 5 HOH A 27 727 51 HOH HOH . I 5 HOH A 28 728 54 HOH HOH . I 5 HOH A 29 729 55 HOH HOH . I 5 HOH A 30 730 56 HOH HOH . I 5 HOH A 31 731 58 HOH HOH . I 5 HOH A 32 732 61 HOH HOH . I 5 HOH A 33 733 63 HOH HOH . I 5 HOH A 34 734 66 HOH HOH . I 5 HOH A 35 735 67 HOH HOH . I 5 HOH A 36 736 68 HOH HOH . I 5 HOH A 37 737 70 HOH HOH . I 5 HOH A 38 738 71 HOH HOH . I 5 HOH A 39 739 72 HOH HOH . I 5 HOH A 40 740 74 HOH HOH . I 5 HOH A 41 741 76 HOH HOH . I 5 HOH A 42 742 77 HOH HOH . I 5 HOH A 43 743 78 HOH HOH . I 5 HOH A 44 744 81 HOH HOH . I 5 HOH A 45 745 82 HOH HOH . I 5 HOH A 46 746 83 HOH HOH . I 5 HOH A 47 747 84 HOH HOH . I 5 HOH A 48 748 85 HOH HOH . I 5 HOH A 49 749 87 HOH HOH . I 5 HOH A 50 750 88 HOH HOH . I 5 HOH A 51 751 89 HOH HOH . I 5 HOH A 52 752 90 HOH HOH . I 5 HOH A 53 753 92 HOH HOH . I 5 HOH A 54 754 93 HOH HOH . I 5 HOH A 55 755 94 HOH HOH . I 5 HOH A 56 756 96 HOH HOH . I 5 HOH A 57 757 97 HOH HOH . I 5 HOH A 58 758 98 HOH HOH . I 5 HOH A 59 759 101 HOH HOH . I 5 HOH A 60 760 106 HOH HOH . I 5 HOH A 61 761 107 HOH HOH . I 5 HOH A 62 762 110 HOH HOH . I 5 HOH A 63 763 111 HOH HOH . I 5 HOH A 64 764 112 HOH HOH . I 5 HOH A 65 765 117 HOH HOH . I 5 HOH A 66 766 120 HOH HOH . I 5 HOH A 67 767 122 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 8 HOH HOH . J 5 HOH B 5 705 10 HOH HOH . J 5 HOH B 6 706 11 HOH HOH . J 5 HOH B 7 707 13 HOH HOH . J 5 HOH B 8 708 14 HOH HOH . J 5 HOH B 9 709 16 HOH HOH . J 5 HOH B 10 710 18 HOH HOH . J 5 HOH B 11 711 19 HOH HOH . J 5 HOH B 12 712 21 HOH HOH . J 5 HOH B 13 713 24 HOH HOH . J 5 HOH B 14 714 27 HOH HOH . J 5 HOH B 15 715 32 HOH HOH . J 5 HOH B 16 716 33 HOH HOH . J 5 HOH B 17 717 34 HOH HOH . J 5 HOH B 18 718 35 HOH HOH . J 5 HOH B 19 719 36 HOH HOH . J 5 HOH B 20 720 38 HOH HOH . J 5 HOH B 21 721 41 HOH HOH . J 5 HOH B 22 722 45 HOH HOH . J 5 HOH B 23 723 47 HOH HOH . J 5 HOH B 24 724 48 HOH HOH . J 5 HOH B 25 725 52 HOH HOH . J 5 HOH B 26 726 53 HOH HOH . J 5 HOH B 27 727 57 HOH HOH . J 5 HOH B 28 728 59 HOH HOH . J 5 HOH B 29 729 60 HOH HOH . J 5 HOH B 30 730 62 HOH HOH . J 5 HOH B 31 731 64 HOH HOH . J 5 HOH B 32 732 65 HOH HOH . J 5 HOH B 33 733 69 HOH HOH . J 5 HOH B 34 734 73 HOH HOH . J 5 HOH B 35 735 75 HOH HOH . J 5 HOH B 36 736 79 HOH HOH . J 5 HOH B 37 737 80 HOH HOH . J 5 HOH B 38 738 86 HOH HOH . J 5 HOH B 39 739 91 HOH HOH . J 5 HOH B 40 740 95 HOH HOH . J 5 HOH B 41 741 99 HOH HOH . J 5 HOH B 42 742 100 HOH HOH . J 5 HOH B 43 743 102 HOH HOH . J 5 HOH B 44 744 103 HOH HOH . J 5 HOH B 45 745 104 HOH HOH . J 5 HOH B 46 746 105 HOH HOH . J 5 HOH B 47 747 108 HOH HOH . J 5 HOH B 48 748 109 HOH HOH . J 5 HOH B 49 749 113 HOH HOH . J 5 HOH B 50 750 114 HOH HOH . J 5 HOH B 51 751 115 HOH HOH . J 5 HOH B 52 752 116 HOH HOH . J 5 HOH B 53 753 118 HOH HOH . J 5 HOH B 54 754 119 HOH HOH . J 5 HOH B 55 755 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.568 _atom_site.Cartn_y 10.21 _atom_site.Cartn_z 43.669 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #