data_3VS7 # _model_server_result.job_id CEDXd3dUV2k9kfqzpS4W1A _model_server_result.datetime_utc '2024-10-17 19:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vs7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 3VS7 # _exptl.entry_id 3VS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VS7 _cell.length_a 72.8 _cell.length_b 96.02 _cell.length_c 182.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc2 A O GLU 447 A GLU 524 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc3 A O PTR 450 A PTR 527 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc4 D CA CA . A CA 602 1_555 B OE2 GLU 413 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc5 B O GLU 447 B GLU 524 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc6 B O PTR 450 B PTR 527 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C17 H17 N7' _chem_comp.formula_weight 319.364 _chem_comp.id KS1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAG KS1 sing 173 n n CAI CAW KS1 sing 174 n n CAG CAH KS1 sing 175 n n CAH CAJ KS1 sing 176 n n CAJ CAW KS1 sing 177 n n CAW NAX KS1 sing 178 n n NAX NAN KS1 sing 179 n y NAX C4 KS1 sing 180 n y NAN CAR KS1 doub 181 n y C4 N3 KS1 doub 182 n y C4 C5 KS1 sing 183 n y N3 C2 KS1 sing 184 n y C2 N1 KS1 doub 185 n y N1 C6 KS1 sing 186 n y C6 NAA KS1 sing 187 n n C6 C5 KS1 doub 188 n y C5 CAR KS1 sing 189 n y CAR CAP KS1 sing 190 n y CAP CAF KS1 doub 191 n y CAP CAE KS1 sing 192 n y CAF CAS KS1 sing 193 n y CAS CAD KS1 sing 194 n y CAS CAT KS1 doub 195 n y CAD CAB KS1 doub 196 n y CAB NAO KS1 sing 197 n y NAO CAT KS1 sing 198 n y CAT NAM KS1 sing 199 n y NAM CAE KS1 doub 200 n y CAI HAI KS1 sing 201 n n CAI HAIA KS1 sing 202 n n CAG HAG KS1 sing 203 n n CAG HAGA KS1 sing 204 n n CAH HAH KS1 sing 205 n n CAH HAHA KS1 sing 206 n n CAJ HAJ KS1 sing 207 n n CAJ HAJA KS1 sing 208 n n CAW HAW KS1 sing 209 n n C2 H2 KS1 sing 210 n n NAA HNAA KS1 sing 211 n n NAA HNAB KS1 sing 212 n n CAF HAF KS1 sing 213 n n CAD HAD KS1 sing 214 n n CAB HAB KS1 sing 215 n n NAO HNAO KS1 sing 216 n n CAE HAE KS1 sing 217 n n # _atom_sites.entry_id 3VS7 _atom_sites.fract_transf_matrix[1][1] 0.013736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KS1 A 1 601 1 KS1 KS1 . D 3 CA A 1 602 600 CA CA . E 4 CL A 1 603 601 CL CL . F 2 KS1 B 1 601 1 KS1 KS1 . G 3 CA B 1 602 600 CA CA . H 4 CL B 1 603 601 CL CL . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 5 HOH HOH . I 5 HOH A 4 704 7 HOH HOH . I 5 HOH A 5 705 8 HOH HOH . I 5 HOH A 6 706 12 HOH HOH . I 5 HOH A 7 707 13 HOH HOH . I 5 HOH A 8 708 15 HOH HOH . I 5 HOH A 9 709 16 HOH HOH . I 5 HOH A 10 710 17 HOH HOH . I 5 HOH A 11 711 18 HOH HOH . I 5 HOH A 12 712 19 HOH HOH . J 5 HOH B 1 701 3 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 9 HOH HOH . J 5 HOH B 5 705 10 HOH HOH . J 5 HOH B 6 706 11 HOH HOH . J 5 HOH B 7 707 14 HOH HOH . J 5 HOH B 8 708 20 HOH HOH . J 5 HOH B 9 709 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI KS1 . . . F 2 -27.025 0.134 82.044 1 93.57 ? CAI KS1 601 B 1 HETATM 2 C CAG KS1 . . . F 2 -25.912 -0.561 81.269 1 111.65 ? CAG KS1 601 B 1 HETATM 3 C CAH KS1 . . . F 2 -26.298 -2.031 81.138 1 108.88 ? CAH KS1 601 B 1 HETATM 4 C CAJ KS1 . . . F 2 -27.733 -2.165 81.633 1 108.79 ? CAJ KS1 601 B 1 HETATM 5 C CAW KS1 . . . F 2 -28.062 -0.913 82.429 1 108.37 ? CAW KS1 601 B 1 HETATM 6 N NAX KS1 . . . F 2 -29.431 -0.423 82.121 1 91.87 ? NAX KS1 601 B 1 HETATM 7 N NAN KS1 . . . F 2 -29.508 0.885 81.644 1 88 ? NAN KS1 601 B 1 HETATM 8 C C4 KS1 . . . F 2 -30.643 -0.956 82.229 1 75.18 ? C4 KS1 601 B 1 HETATM 9 N N3 KS1 . . . F 2 -31.071 -2.166 82.635 1 75.83 ? N3 KS1 601 B 1 HETATM 10 C C2 KS1 . . . F 2 -32.383 -2.433 82.628 1 77.22 ? C2 KS1 601 B 1 HETATM 11 N N1 KS1 . . . F 2 -33.293 -1.532 82.225 1 78.84 ? N1 KS1 601 B 1 HETATM 12 C C6 KS1 . . . F 2 -32.907 -0.307 81.809 1 73.78 ? C6 KS1 601 B 1 HETATM 13 N NAA KS1 . . . F 2 -33.838 0.587 81.404 1 74.78 ? NAA KS1 601 B 1 HETATM 14 C C5 KS1 . . . F 2 -31.552 0.009 81.805 1 61.96 ? C5 KS1 601 B 1 HETATM 15 C CAR KS1 . . . F 2 -30.819 1.147 81.432 1 68.83 ? CAR KS1 601 B 1 HETATM 16 C CAP KS1 . . . F 2 -31.303 2.459 80.909 1 65.39 ? CAP KS1 601 B 1 HETATM 17 C CAF KS1 . . . F 2 -32.243 3.191 81.619 1 79.68 ? CAF KS1 601 B 1 HETATM 18 C CAS KS1 . . . F 2 -32.649 4.408 81.08 1 88.7 ? CAS KS1 601 B 1 HETATM 19 C CAD KS1 . . . F 2 -33.586 5.364 81.577 1 99.99 ? CAD KS1 601 B 1 HETATM 20 C CAB KS1 . . . F 2 -33.541 6.352 80.591 1 107.05 ? CAB KS1 601 B 1 HETATM 21 N NAO KS1 . . . F 2 -32.665 6.017 79.609 1 113.88 ? NAO KS1 601 B 1 HETATM 22 C CAT KS1 . . . F 2 -32.111 4.828 79.897 1 99.46 ? CAT KS1 601 B 1 HETATM 23 N NAM KS1 . . . F 2 -31.192 4.118 79.207 1 109.5 ? NAM KS1 601 B 1 HETATM 24 C CAE KS1 . . . F 2 -30.788 2.946 79.707 1 96.44 ? CAE KS1 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #