data_3VSF
#
_model_server_result.job_id            zIfiJV1s0POd94hwRiRXqA 
_model_server_result.datetime_utc      '2024-12-22 06:28:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vsf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":604}' 
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_entry.id    3VSF 
#
_exptl.entry_id    3VSF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VSF 
_cell.length_a            107.603 
_cell.length_b            122.509 
_cell.length_c            405.531 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3VSF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,U 1 1 
B,I,J 2 1 
C,K,L,M,N,V 3 1 
D,O 4 1 
E,P,W 5 1 
F,Q,R,S,T,X 6 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3VSF 
_atom_sites.fract_transf_matrix[1][1]    0.009293 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL A 1 601 1 GOL GOL . 
H 2 GOL A 1 602 10 GOL GOL . 
I 2 GOL B 1 601 6 GOL GOL . 
J 2 GOL B 1 602 13 GOL GOL . 
K 2 GOL C 1 601 2 GOL GOL . 
L 2 GOL C 1 602 7 GOL GOL . 
M 2 GOL C 1 603 9 GOL GOL . 
N 2 GOL C 1 604 12 GOL GOL . 
O 2 GOL D 1 601 8 GOL GOL . 
P 2 GOL E 1 601 5 GOL GOL . 
Q 2 GOL F 1 601 3 GOL GOL . 
R 2 GOL F 1 602 4 GOL GOL . 
S 2 GOL F 1 603 11 GOL GOL . 
T 2 GOL F 1 604 14 GOL GOL . 
U 3 HOH A 1 701 10 HOH HOH . 
U 3 HOH A 2 702 11 HOH HOH . 
U 3 HOH A 3 703 23 HOH HOH . 
U 3 HOH A 4 704 24 HOH HOH . 
V 3 HOH C 1 701 4 HOH HOH . 
V 3 HOH C 2 702 5 HOH HOH . 
V 3 HOH C 3 703 8 HOH HOH . 
V 3 HOH C 4 704 16 HOH HOH . 
V 3 HOH C 5 705 17 HOH HOH . 
V 3 HOH C 6 706 19 HOH HOH . 
V 3 HOH C 7 707 20 HOH HOH . 
V 3 HOH C 8 708 21 HOH HOH . 
V 3 HOH C 9 709 26 HOH HOH . 
V 3 HOH C 10 710 27 HOH HOH . 
V 3 HOH C 11 711 28 HOH HOH . 
V 3 HOH C 12 712 29 HOH HOH . 
W 3 HOH E 1 701 9 HOH HOH . 
W 3 HOH E 2 702 14 HOH HOH . 
X 3 HOH F 1 701 1 HOH HOH . 
X 3 HOH F 2 702 2 HOH HOH . 
X 3 HOH F 3 703 6 HOH HOH . 
X 3 HOH F 4 704 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 2 24.828 17.772 213.332 1 52.63 ? C1 GOL 604 C 1 
HETATM 2 O O1 GOL . . . N 2 23.66 18.551 213.475 1 56.66 ? O1 GOL 604 C 1 
HETATM 3 C C2 GOL . . . N 2 26.047 18.618 213.688 1 51.28 ? C2 GOL 604 C 1 
HETATM 4 O O2 GOL . . . N 2 26.269 19.576 212.675 1 51.49 ? O2 GOL 604 C 1 
HETATM 5 C C3 GOL . . . N 2 27.27 17.716 213.821 1 48.48 ? C3 GOL 604 C 1 
HETATM 6 O O3 GOL . . . N 2 27.797 17.823 215.124 1 49.57 ? O3 GOL 604 C 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           1381 
_model_server_stats.encode_time_ms          113 
_model_server_stats.element_count           6 
#