data_3VSI # _model_server_result.job_id '_LUtmP0CwvoyPouni3Fjbw' _model_server_result.datetime_utc '2024-12-02 03:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 3VSI # _exptl.entry_id 3VSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.61 _cell.angle_gamma 90 _cell.entry_id 3VSI _cell.length_a 272.73 _cell.length_b 48.26 _cell.length_c 108.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 13 B HIS 13 1_555 E FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 B NE2 HIS 62 B HIS 62 1_555 E FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 B OE2 GLU 251 B GLU 251 1_555 E FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc4 E FE FE . B FE 401 1_555 F O8 4NC . B 4NC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc5 E FE FE . B FE 401 1_555 F O7 4NC . B 4NC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 D NE2 HIS 13 D HIS 13 1_555 G FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 D NE2 HIS 62 D HIS 62 1_555 G FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 D OE2 GLU 251 D GLU 251 1_555 G FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 D OE1 GLU 251 D GLU 251 1_555 G FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc10 G FE FE . D FE 401 1_555 H O8 4NC . D 4NC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc11 G FE FE . D FE 401 1_555 H O7 4NC . D 4NC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VSI _atom_sites.fract_transf_matrix[1][1] 0.003667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001306 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FE B 1 401 500 FE FE . F 4 4NC B 1 402 600 4NC 4NC . G 3 FE D 1 401 500 FE FE . H 4 4NC D 1 402 600 4NC 4NC . I 5 HOH A 1 301 272 HOH HOH . I 5 HOH A 2 302 273 HOH HOH . I 5 HOH A 3 303 274 HOH HOH . I 5 HOH A 4 304 275 HOH HOH . I 5 HOH A 5 305 276 HOH HOH . I 5 HOH A 6 306 277 HOH HOH . I 5 HOH A 7 307 278 HOH HOH . I 5 HOH A 8 308 279 HOH HOH . I 5 HOH A 9 309 280 HOH HOH . I 5 HOH A 10 310 281 HOH HOH . I 5 HOH A 11 311 282 HOH HOH . I 5 HOH A 12 312 283 HOH HOH . I 5 HOH A 13 313 284 HOH HOH . I 5 HOH A 14 314 285 HOH HOH . I 5 HOH A 15 315 286 HOH HOH . I 5 HOH A 16 316 287 HOH HOH . I 5 HOH A 17 317 288 HOH HOH . I 5 HOH A 18 318 289 HOH HOH . I 5 HOH A 19 319 290 HOH HOH . I 5 HOH A 20 320 291 HOH HOH . I 5 HOH A 21 321 292 HOH HOH . I 5 HOH A 22 322 293 HOH HOH . I 5 HOH A 23 323 294 HOH HOH . I 5 HOH A 24 324 295 HOH HOH . I 5 HOH A 25 325 296 HOH HOH . I 5 HOH A 26 326 297 HOH HOH . I 5 HOH A 27 327 298 HOH HOH . I 5 HOH A 28 328 299 HOH HOH . I 5 HOH A 29 329 300 HOH HOH . I 5 HOH A 30 330 301 HOH HOH . I 5 HOH A 31 331 302 HOH HOH . I 5 HOH A 32 332 303 HOH HOH . I 5 HOH A 33 333 304 HOH HOH . I 5 HOH A 34 334 305 HOH HOH . I 5 HOH A 35 335 306 HOH HOH . I 5 HOH A 36 336 307 HOH HOH . I 5 HOH A 37 337 308 HOH HOH . I 5 HOH A 38 338 309 HOH HOH . I 5 HOH A 39 339 310 HOH HOH . I 5 HOH A 40 340 311 HOH HOH . I 5 HOH A 41 341 312 HOH HOH . I 5 HOH A 42 342 313 HOH HOH . I 5 HOH A 43 343 314 HOH HOH . I 5 HOH A 44 344 315 HOH HOH . I 5 HOH A 45 345 316 HOH HOH . I 5 HOH A 46 346 317 HOH HOH . I 5 HOH A 47 347 318 HOH HOH . I 5 HOH A 48 348 319 HOH HOH . I 5 HOH A 49 349 320 HOH HOH . I 5 HOH A 50 350 321 HOH HOH . I 5 HOH A 51 351 322 HOH HOH . I 5 HOH A 52 352 323 HOH HOH . I 5 HOH A 53 353 324 HOH HOH . I 5 HOH A 54 354 325 HOH HOH . I 5 HOH A 55 355 326 HOH HOH . I 5 HOH A 56 356 327 HOH HOH . I 5 HOH A 57 357 328 HOH HOH . I 5 HOH A 58 358 329 HOH HOH . I 5 HOH A 59 359 330 HOH HOH . I 5 HOH A 60 360 331 HOH HOH . I 5 HOH A 61 361 332 HOH HOH . I 5 HOH A 62 362 333 HOH HOH . I 5 HOH A 63 363 334 HOH HOH . I 5 HOH A 64 364 335 HOH HOH . I 5 HOH A 65 365 336 HOH HOH . I 5 HOH A 66 366 337 HOH HOH . I 5 HOH A 67 367 338 HOH HOH . I 5 HOH A 68 368 339 HOH HOH . I 5 HOH A 69 369 340 HOH HOH . I 5 HOH A 70 370 341 HOH HOH . I 5 HOH A 71 371 342 HOH HOH . I 5 HOH A 72 372 343 HOH HOH . I 5 HOH A 73 373 344 HOH HOH . I 5 HOH A 74 374 345 HOH HOH . I 5 HOH A 75 375 346 HOH HOH . I 5 HOH A 76 376 347 HOH HOH . I 5 HOH A 77 377 348 HOH HOH . I 5 HOH A 78 378 349 HOH HOH . I 5 HOH A 79 379 350 HOH HOH . I 5 HOH A 80 380 351 HOH HOH . I 5 HOH A 81 381 352 HOH HOH . I 5 HOH A 82 382 353 HOH HOH . I 5 HOH A 83 383 354 HOH HOH . I 5 HOH A 84 384 355 HOH HOH . I 5 HOH A 85 385 356 HOH HOH . I 5 HOH A 86 386 357 HOH HOH . I 5 HOH A 87 387 358 HOH HOH . I 5 HOH A 88 388 359 HOH HOH . I 5 HOH A 89 389 360 HOH HOH . I 5 HOH A 90 390 361 HOH HOH . I 5 HOH A 91 391 362 HOH HOH . I 5 HOH A 92 392 363 HOH HOH . I 5 HOH A 93 393 364 HOH HOH . I 5 HOH A 94 394 365 HOH HOH . I 5 HOH A 95 395 366 HOH HOH . I 5 HOH A 96 396 367 HOH HOH . I 5 HOH A 97 397 368 HOH HOH . I 5 HOH A 98 398 369 HOH HOH . I 5 HOH A 99 399 370 HOH HOH . I 5 HOH A 100 400 371 HOH HOH . I 5 HOH A 101 401 372 HOH HOH . I 5 HOH A 102 402 373 HOH HOH . I 5 HOH A 103 403 374 HOH HOH . I 5 HOH A 104 404 375 HOH HOH . I 5 HOH A 105 405 376 HOH HOH . I 5 HOH A 106 406 377 HOH HOH . I 5 HOH A 107 407 378 HOH HOH . J 5 HOH B 1 501 313 HOH HOH . J 5 HOH B 2 502 314 HOH HOH . J 5 HOH B 3 503 315 HOH HOH . J 5 HOH B 4 504 316 HOH HOH . J 5 HOH B 5 505 317 HOH HOH . J 5 HOH B 6 506 318 HOH HOH . J 5 HOH B 7 507 319 HOH HOH . J 5 HOH B 8 508 320 HOH HOH . J 5 HOH B 9 509 321 HOH HOH . J 5 HOH B 10 510 322 HOH HOH . J 5 HOH B 11 511 323 HOH HOH . J 5 HOH B 12 512 324 HOH HOH . J 5 HOH B 13 513 325 HOH HOH . J 5 HOH B 14 514 326 HOH HOH . J 5 HOH B 15 515 327 HOH HOH . J 5 HOH B 16 516 328 HOH HOH . J 5 HOH B 17 517 329 HOH HOH . J 5 HOH B 18 518 330 HOH HOH . J 5 HOH B 19 519 331 HOH HOH . J 5 HOH B 20 520 332 HOH HOH . J 5 HOH B 21 521 333 HOH HOH . J 5 HOH B 22 522 334 HOH HOH . J 5 HOH B 23 523 335 HOH HOH . J 5 HOH B 24 524 336 HOH HOH . J 5 HOH B 25 525 337 HOH HOH . J 5 HOH B 26 526 338 HOH HOH . J 5 HOH B 27 527 339 HOH HOH . J 5 HOH B 28 528 340 HOH HOH . J 5 HOH B 29 529 341 HOH HOH . J 5 HOH B 30 530 342 HOH HOH . J 5 HOH B 31 531 343 HOH HOH . J 5 HOH B 32 532 344 HOH HOH . J 5 HOH B 33 533 345 HOH HOH . J 5 HOH B 34 534 346 HOH HOH . J 5 HOH B 35 535 347 HOH HOH . J 5 HOH B 36 536 348 HOH HOH . J 5 HOH B 37 537 349 HOH HOH . J 5 HOH B 38 538 350 HOH HOH . J 5 HOH B 39 539 351 HOH HOH . J 5 HOH B 40 540 352 HOH HOH . J 5 HOH B 41 541 353 HOH HOH . J 5 HOH B 42 542 354 HOH HOH . J 5 HOH B 43 543 355 HOH HOH . J 5 HOH B 44 544 356 HOH HOH . J 5 HOH B 45 545 357 HOH HOH . J 5 HOH B 46 546 358 HOH HOH . J 5 HOH B 47 547 359 HOH HOH . J 5 HOH B 48 548 360 HOH HOH . J 5 HOH B 49 549 361 HOH HOH . J 5 HOH B 50 550 362 HOH HOH . J 5 HOH B 51 551 363 HOH HOH . J 5 HOH B 52 552 364 HOH HOH . J 5 HOH B 53 553 365 HOH HOH . J 5 HOH B 54 554 366 HOH HOH . J 5 HOH B 55 555 367 HOH HOH . J 5 HOH B 56 556 368 HOH HOH . J 5 HOH B 57 557 369 HOH HOH . J 5 HOH B 58 558 370 HOH HOH . J 5 HOH B 59 559 371 HOH HOH . J 5 HOH B 60 560 372 HOH HOH . J 5 HOH B 61 561 373 HOH HOH . J 5 HOH B 62 562 374 HOH HOH . K 5 HOH C 1 301 272 HOH HOH . K 5 HOH C 2 302 273 HOH HOH . K 5 HOH C 3 303 274 HOH HOH . K 5 HOH C 4 304 275 HOH HOH . K 5 HOH C 5 305 276 HOH HOH . K 5 HOH C 6 306 277 HOH HOH . K 5 HOH C 7 307 278 HOH HOH . K 5 HOH C 8 308 279 HOH HOH . K 5 HOH C 9 309 280 HOH HOH . K 5 HOH C 10 310 281 HOH HOH . K 5 HOH C 11 311 282 HOH HOH . K 5 HOH C 12 312 283 HOH HOH . K 5 HOH C 13 313 284 HOH HOH . K 5 HOH C 14 314 285 HOH HOH . K 5 HOH C 15 315 286 HOH HOH . K 5 HOH C 16 316 287 HOH HOH . K 5 HOH C 17 317 288 HOH HOH . K 5 HOH C 18 318 289 HOH HOH . K 5 HOH C 19 319 290 HOH HOH . K 5 HOH C 20 320 291 HOH HOH . K 5 HOH C 21 321 292 HOH HOH . K 5 HOH C 22 322 293 HOH HOH . K 5 HOH C 23 323 294 HOH HOH . K 5 HOH C 24 324 295 HOH HOH . K 5 HOH C 25 325 296 HOH HOH . K 5 HOH C 26 326 297 HOH HOH . K 5 HOH C 27 327 298 HOH HOH . K 5 HOH C 28 328 299 HOH HOH . K 5 HOH C 29 329 300 HOH HOH . K 5 HOH C 30 330 301 HOH HOH . K 5 HOH C 31 331 302 HOH HOH . K 5 HOH C 32 332 303 HOH HOH . K 5 HOH C 33 333 304 HOH HOH . K 5 HOH C 34 334 305 HOH HOH . K 5 HOH C 35 335 306 HOH HOH . K 5 HOH C 36 336 307 HOH HOH . K 5 HOH C 37 337 308 HOH HOH . K 5 HOH C 38 338 309 HOH HOH . K 5 HOH C 39 339 310 HOH HOH . K 5 HOH C 40 340 311 HOH HOH . K 5 HOH C 41 341 312 HOH HOH . K 5 HOH C 42 342 313 HOH HOH . K 5 HOH C 43 343 314 HOH HOH . K 5 HOH C 44 344 315 HOH HOH . K 5 HOH C 45 345 316 HOH HOH . K 5 HOH C 46 346 317 HOH HOH . K 5 HOH C 47 347 318 HOH HOH . K 5 HOH C 48 348 319 HOH HOH . K 5 HOH C 49 349 320 HOH HOH . K 5 HOH C 50 350 321 HOH HOH . K 5 HOH C 51 351 322 HOH HOH . K 5 HOH C 52 352 323 HOH HOH . K 5 HOH C 53 353 324 HOH HOH . K 5 HOH C 54 354 325 HOH HOH . K 5 HOH C 55 355 326 HOH HOH . K 5 HOH C 56 356 327 HOH HOH . K 5 HOH C 57 357 328 HOH HOH . K 5 HOH C 58 358 329 HOH HOH . K 5 HOH C 59 359 330 HOH HOH . L 5 HOH D 1 501 313 HOH HOH . L 5 HOH D 2 502 314 HOH HOH . L 5 HOH D 3 503 315 HOH HOH . L 5 HOH D 4 504 316 HOH HOH . L 5 HOH D 5 505 317 HOH HOH . L 5 HOH D 6 506 318 HOH HOH . L 5 HOH D 7 507 319 HOH HOH . L 5 HOH D 8 508 320 HOH HOH . L 5 HOH D 9 509 321 HOH HOH . L 5 HOH D 10 510 322 HOH HOH . L 5 HOH D 11 511 323 HOH HOH . L 5 HOH D 12 512 324 HOH HOH . L 5 HOH D 13 513 325 HOH HOH . L 5 HOH D 14 514 326 HOH HOH . L 5 HOH D 15 515 327 HOH HOH . L 5 HOH D 16 516 328 HOH HOH . L 5 HOH D 17 517 329 HOH HOH . L 5 HOH D 18 518 330 HOH HOH . L 5 HOH D 19 519 331 HOH HOH . L 5 HOH D 20 520 332 HOH HOH . L 5 HOH D 21 521 333 HOH HOH . L 5 HOH D 22 522 334 HOH HOH . L 5 HOH D 23 523 335 HOH HOH . L 5 HOH D 24 524 336 HOH HOH . L 5 HOH D 25 525 337 HOH HOH . L 5 HOH D 26 526 338 HOH HOH . L 5 HOH D 27 527 339 HOH HOH . L 5 HOH D 28 528 340 HOH HOH . L 5 HOH D 29 529 341 HOH HOH . L 5 HOH D 30 530 342 HOH HOH . L 5 HOH D 31 531 343 HOH HOH . L 5 HOH D 32 532 344 HOH HOH . L 5 HOH D 33 533 345 HOH HOH . L 5 HOH D 34 534 346 HOH HOH . L 5 HOH D 35 535 347 HOH HOH . L 5 HOH D 36 536 348 HOH HOH . L 5 HOH D 37 537 349 HOH HOH . L 5 HOH D 38 538 350 HOH HOH . L 5 HOH D 39 539 351 HOH HOH . L 5 HOH D 40 540 352 HOH HOH . L 5 HOH D 41 541 353 HOH HOH . L 5 HOH D 42 542 354 HOH HOH . L 5 HOH D 43 543 355 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -50.805 _atom_site.Cartn_y -18.17 _atom_site.Cartn_z 33.742 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #