data_3VT8
#
_model_server_result.job_id            NZeSP9th46ZBnZfnqsZqCg 
_model_server_result.datetime_utc      '2024-11-25 13:49:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vt8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3VT8 
#
_exptl.entry_id    3VT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              460.732 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R,7E,9beta,17beta)-9-butyl-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9,10-secoestra-5,7-diene-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.62 
_cell.angle_gamma         90 
_cell.entry_id            3VT8 
_cell.length_a            155.068 
_cell.length_b            42.052 
_cell.length_c            41.868 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,C,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H52 O3' 
_chem_comp.formula_weight    460.732 
_chem_comp.id                YI3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R,7E,9beta,17beta)-9-butyl-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9,10-secoestra-5,7-diene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 YI3 sing 376 n n 
C02 C01 YI3 sing 377 n n 
C02 C03 YI3 sing 378 n n 
C01 C10 YI3 sing 379 n n 
C03 O02 YI3 sing 380 n n 
C03 C04 YI3 sing 381 n n 
C10 C05 YI3 sing 382 n n 
C04 C05 YI3 sing 383 n n 
C05 C06 YI3 doub 384 n n 
C06 C07 YI3 sing 385 n n 
C07 C08 YI3 doub 386 e n 
C15 C14 YI3 sing 387 n n 
C15 C16 YI3 sing 388 n n 
C08 C14 YI3 sing 389 n n 
C08 C09 YI3 sing 390 n n 
C18 C13 YI3 sing 391 n n 
C14 C13 YI3 sing 392 n n 
C16 C17 YI3 sing 393 n n 
C09 C28 YI3 sing 394 n n 
C09 C11 YI3 sing 395 n n 
C29 C30 YI3 sing 396 n n 
C29 C28 YI3 sing 397 n n 
C30 C31 YI3 sing 398 n n 
C13 C17 YI3 sing 399 n n 
C13 C12 YI3 sing 400 n n 
C27 C25 YI3 sing 401 n n 
C24 C25 YI3 sing 402 n n 
C24 C23 YI3 sing 403 n n 
C11 C12 YI3 sing 404 n n 
C17 C20 YI3 sing 405 n n 
C22 C23 YI3 sing 406 n n 
C22 C20 YI3 sing 407 n n 
C25 C26 YI3 sing 408 n n 
C25 O03 YI3 sing 409 n n 
C20 C21 YI3 sing 410 n n 
O03 H1 YI3 sing 411 n n 
C26 H2 YI3 sing 412 n n 
C26 H3 YI3 sing 413 n n 
C26 H4 YI3 sing 414 n n 
C27 H5 YI3 sing 415 n n 
C27 H6 YI3 sing 416 n n 
C27 H7 YI3 sing 417 n n 
C24 H8 YI3 sing 418 n n 
C24 H9 YI3 sing 419 n n 
C23 H10 YI3 sing 420 n n 
C23 H11 YI3 sing 421 n n 
C22 H12 YI3 sing 422 n n 
C22 H13 YI3 sing 423 n n 
C20 H14 YI3 sing 424 n n 
C21 H15 YI3 sing 425 n n 
C21 H16 YI3 sing 426 n n 
C21 H17 YI3 sing 427 n n 
C17 H18 YI3 sing 428 n n 
C16 H19 YI3 sing 429 n n 
C16 H20 YI3 sing 430 n n 
C15 H21 YI3 sing 431 n n 
C15 H22 YI3 sing 432 n n 
C14 H23 YI3 sing 433 n n 
C18 H24 YI3 sing 434 n n 
C18 H25 YI3 sing 435 n n 
C18 H26 YI3 sing 436 n n 
C12 H27 YI3 sing 437 n n 
C12 H28 YI3 sing 438 n n 
C11 H29 YI3 sing 439 n n 
C11 H30 YI3 sing 440 n n 
C09 H31 YI3 sing 441 n n 
C28 H32 YI3 sing 442 n n 
C28 H33 YI3 sing 443 n n 
C29 H34 YI3 sing 444 n n 
C29 H35 YI3 sing 445 n n 
C30 H36 YI3 sing 446 n n 
C30 H37 YI3 sing 447 n n 
C31 H38 YI3 sing 448 n n 
C31 H39 YI3 sing 449 n n 
C31 H40 YI3 sing 450 n n 
C07 H41 YI3 sing 451 n n 
C06 H42 YI3 sing 452 n n 
C10 H43 YI3 sing 453 n n 
C10 H44 YI3 sing 454 n n 
C04 H45 YI3 sing 455 n n 
C04 H46 YI3 sing 456 n n 
C03 H47 YI3 sing 457 n n 
O02 H48 YI3 sing 458 n n 
C02 H49 YI3 sing 459 n n 
C02 H50 YI3 sing 460 n n 
C01 H51 YI3 sing 461 n n 
O01 H52 YI3 sing 462 n n 
#
_atom_sites.entry_id                     3VT8 
_atom_sites.fract_transf_matrix[1][1]    0.006449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000634 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 YI3 A 1 500 500 YI3 YI3 . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 11 HOH HOH . 
D 4 HOH A 11 611 12 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 14 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 16 HOH HOH . 
D 4 HOH A 16 616 17 HOH HOH . 
D 4 HOH A 17 617 18 HOH HOH . 
D 4 HOH A 18 618 19 HOH HOH . 
D 4 HOH A 19 619 20 HOH HOH . 
D 4 HOH A 20 620 21 HOH HOH . 
D 4 HOH A 21 621 22 HOH HOH . 
D 4 HOH A 22 622 23 HOH HOH . 
D 4 HOH A 23 623 24 HOH HOH . 
D 4 HOH A 24 624 25 HOH HOH . 
D 4 HOH A 25 625 26 HOH HOH . 
D 4 HOH A 26 626 27 HOH HOH . 
D 4 HOH A 27 627 28 HOH HOH . 
D 4 HOH A 28 628 29 HOH HOH . 
D 4 HOH A 29 629 30 HOH HOH . 
D 4 HOH A 30 630 31 HOH HOH . 
D 4 HOH A 31 631 32 HOH HOH . 
D 4 HOH A 32 632 33 HOH HOH . 
D 4 HOH A 33 633 34 HOH HOH . 
D 4 HOH A 34 634 35 HOH HOH . 
D 4 HOH A 35 635 36 HOH HOH . 
D 4 HOH A 36 636 37 HOH HOH . 
D 4 HOH A 37 637 38 HOH HOH . 
D 4 HOH A 38 638 39 HOH HOH . 
D 4 HOH A 39 639 40 HOH HOH . 
D 4 HOH A 40 640 41 HOH HOH . 
D 4 HOH A 41 641 42 HOH HOH . 
D 4 HOH A 42 642 43 HOH HOH . 
D 4 HOH A 43 643 44 HOH HOH . 
D 4 HOH A 44 644 45 HOH HOH . 
D 4 HOH A 45 645 46 HOH HOH . 
D 4 HOH A 46 646 47 HOH HOH . 
D 4 HOH A 47 647 48 HOH HOH . 
D 4 HOH A 48 648 49 HOH HOH . 
D 4 HOH A 49 649 50 HOH HOH . 
D 4 HOH A 50 650 51 HOH HOH . 
D 4 HOH A 51 651 52 HOH HOH . 
D 4 HOH A 52 652 53 HOH HOH . 
D 4 HOH A 53 653 54 HOH HOH . 
D 4 HOH A 54 654 55 HOH HOH . 
D 4 HOH A 55 655 56 HOH HOH . 
D 4 HOH A 56 656 57 HOH HOH . 
D 4 HOH A 57 657 58 HOH HOH . 
D 4 HOH A 58 658 59 HOH HOH . 
D 4 HOH A 59 659 60 HOH HOH . 
D 4 HOH A 60 660 61 HOH HOH . 
D 4 HOH A 61 661 62 HOH HOH . 
D 4 HOH A 62 662 63 HOH HOH . 
D 4 HOH A 63 663 64 HOH HOH . 
D 4 HOH A 64 664 65 HOH HOH . 
D 4 HOH A 65 665 66 HOH HOH . 
D 4 HOH A 66 666 67 HOH HOH . 
D 4 HOH A 67 667 68 HOH HOH . 
D 4 HOH A 68 668 69 HOH HOH . 
D 4 HOH A 69 669 70 HOH HOH . 
D 4 HOH A 70 670 71 HOH HOH . 
D 4 HOH A 71 671 72 HOH HOH . 
D 4 HOH A 72 672 73 HOH HOH . 
D 4 HOH A 73 673 74 HOH HOH . 
D 4 HOH A 74 674 75 HOH HOH . 
D 4 HOH A 75 675 76 HOH HOH . 
D 4 HOH A 76 676 77 HOH HOH . 
D 4 HOH A 77 677 78 HOH HOH . 
D 4 HOH A 78 678 79 HOH HOH . 
D 4 HOH A 79 679 80 HOH HOH . 
D 4 HOH A 80 680 81 HOH HOH . 
D 4 HOH A 81 681 82 HOH HOH . 
D 4 HOH A 82 682 83 HOH HOH . 
D 4 HOH A 83 683 84 HOH HOH . 
D 4 HOH A 84 684 85 HOH HOH . 
D 4 HOH A 85 685 86 HOH HOH . 
D 4 HOH A 86 686 87 HOH HOH . 
D 4 HOH A 87 687 88 HOH HOH . 
D 4 HOH A 88 688 89 HOH HOH . 
D 4 HOH A 89 689 90 HOH HOH . 
D 4 HOH A 90 690 91 HOH HOH . 
D 4 HOH A 91 691 92 HOH HOH . 
D 4 HOH A 92 692 93 HOH HOH . 
D 4 HOH A 93 693 94 HOH HOH . 
D 4 HOH A 94 694 95 HOH HOH . 
E 4 HOH C 1 701 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O03 YI3 . . . C 3 9.467 -2.595 28.398 1 26.73 ? O03 YI3 500 A 1 
HETATM 2 C C25 YI3 . . . C 3 8.752 -1.725 27.512 1 31.21 ? C25 YI3 500 A 1 
HETATM 3 C C26 YI3 . . . C 3 7.808 -0.87 28.363 1 29.12 ? C26 YI3 500 A 1 
HETATM 4 C C27 YI3 . . . C 3 7.956 -2.58 26.518 1 24.52 ? C27 YI3 500 A 1 
HETATM 5 C C24 YI3 . . . C 3 9.842 -0.88 26.799 1 29.44 ? C24 YI3 500 A 1 
HETATM 6 C C23 YI3 . . . C 3 10.612 0.173 27.625 1 30.92 ? C23 YI3 500 A 1 
HETATM 7 C C22 YI3 . . . C 3 12.041 0.295 27.078 1 21.6 ? C22 YI3 500 A 1 
HETATM 8 C C20 YI3 . . . C 3 13.057 1.078 27.948 1 26.6 ? C20 YI3 500 A 1 
HETATM 9 C C21 YI3 . . . C 3 13.886 0.086 28.787 1 18.19 ? C21 YI3 500 A 1 
HETATM 10 C C17 YI3 . . . C 3 13.931 2.006 27.005 1 27.21 ? C17 YI3 500 A 1 
HETATM 11 C C16 YI3 . . . C 3 14.459 1.283 25.728 1 32.56 ? C16 YI3 500 A 1 
HETATM 12 C C15 YI3 . . . C 3 15.102 2.372 24.855 1 26.15 ? C15 YI3 500 A 1 
HETATM 13 C C14 YI3 . . . C 3 14.816 3.636 25.708 1 28.94 ? C14 YI3 500 A 1 
HETATM 14 C C13 YI3 . . . C 3 13.44 3.38 26.41 1 24.47 ? C13 YI3 500 A 1 
HETATM 15 C C18 YI3 . . . C 3 12.137 3.254 25.508 1 19.04 ? C18 YI3 500 A 1 
HETATM 16 C C12 YI3 . . . C 3 13.268 4.537 27.458 1 30.11 ? C12 YI3 500 A 1 
HETATM 17 C C11 YI3 . . . C 3 13.282 5.989 26.839 1 21.55 ? C11 YI3 500 A 1 
HETATM 18 C C09 YI3 . . . C 3 14.439 6.256 25.824 1 28.52 ? C09 YI3 500 A 1 
HETATM 19 C C28 YI3 . . . C 3 15.714 6.623 26.632 1 31.54 ? C28 YI3 500 A 1 
HETATM 20 C C29 YI3 . . . C 3 16.778 7.42 25.866 1 49.02 ? C29 YI3 500 A 1 
HETATM 21 C C30 YI3 . . . C 3 18.197 6.859 26.089 1 49.96 ? C30 YI3 500 A 1 
HETATM 22 C C31 YI3 . . . C 3 18.782 7.141 27.482 1 54.06 ? C31 YI3 500 A 1 
HETATM 23 C C08 YI3 . . . C 3 14.718 4.995 24.938 1 26.26 ? C08 YI3 500 A 1 
HETATM 24 C C07 YI3 . . . C 3 14.809 5.143 23.533 1 21.44 ? C07 YI3 500 A 1 
HETATM 25 C C06 YI3 . . . C 3 14.706 6.259 22.68 1 18.13 ? C06 YI3 500 A 1 
HETATM 26 C C05 YI3 . . . C 3 14.351 6.392 21.33 1 23.6 ? C05 YI3 500 A 1 
HETATM 27 C C10 YI3 . . . C 3 13.959 5.241 20.377 1 17.01 ? C10 YI3 500 A 1 
HETATM 28 C C04 YI3 . . . C 3 14.333 7.818 20.698 1 18.89 ? C04 YI3 500 A 1 
HETATM 29 C C03 YI3 . . . C 3 15.013 7.859 19.287 1 16.46 ? C03 YI3 500 A 1 
HETATM 30 O O02 YI3 . . . C 3 16.437 7.814 19.456 1 22 ? O02 YI3 500 A 1 
HETATM 31 C C02 YI3 . . . C 3 14.571 6.663 18.368 1 17.68 ? C02 YI3 500 A 1 
HETATM 32 C C01 YI3 . . . C 3 14.773 5.287 19.071 1 16.19 ? C01 YI3 500 A 1 
HETATM 33 O O01 YI3 . . . C 3 14.32 4.231 18.223 1 20.46 ? O01 YI3 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#