data_3VTB
#
_model_server_result.job_id            eHvPisKvm7MuXKM_g8AKWQ 
_model_server_result.datetime_utc      '2024-12-22 05:49:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vtb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3VTB 
#
_exptl.entry_id    3VTB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              518.77 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.56 
_cell.angle_gamma         90 
_cell.entry_id            3VTB 
_cell.length_a            153.563 
_cell.length_b            43.199 
_cell.length_c            42.487 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VTB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H50 O3' 
_chem_comp.formula_weight    518.77 
_chem_comp.id                TKA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C02 TKA doub 306 n n 
O01 C01 TKA sing 307 n n 
C02 C01 TKA sing 308 n n 
C02 C03 TKA sing 309 n n 
C01 C10 TKA sing 310 n n 
C03 O02 TKA sing 311 n n 
C03 C04 TKA sing 312 n n 
C10 C05 TKA sing 313 n n 
C04 C05 TKA sing 314 n n 
C05 C06 TKA doub 315 n n 
C06 C07 TKA sing 316 n n 
C07 C08 TKA doub 317 e n 
C08 C09 TKA sing 318 n n 
C08 C14 TKA sing 319 n n 
C18 C13 TKA sing 320 n n 
C15 C14 TKA sing 321 n n 
C15 C16 TKA sing 322 n n 
C09 C11 TKA sing 323 n n 
C14 C13 TKA sing 324 n n 
C36 C35 TKA sing 325 n n 
C36 C31 TKA sing 326 n n 
C35 C37 TKA sing 327 n n 
C35 C38 TKA sing 328 n n 
C11 C12 TKA sing 329 n n 
C16 C17 TKA sing 330 n n 
C13 C12 TKA sing 331 n n 
C13 C17 TKA sing 332 n n 
C37 C29 TKA sing 333 n n 
C17 C20 TKA sing 334 n n 
C31 C30 TKA sing 335 n n 
C31 C32 TKA sing 336 n n 
C30 C29 TKA sing 337 n n 
C38 C33 TKA sing 338 n n 
C20 C22 TKA sing 339 n n 
C20 C21 TKA sing 340 n n 
C29 C25 TKA sing 341 n n 
C29 C34 TKA sing 342 n n 
C25 C24 TKA sing 343 n n 
C25 O03 TKA sing 344 n n 
C24 C23 TKA trip 345 n n 
C23 C22 TKA sing 346 n n 
C32 C33 TKA sing 347 n n 
C33 C34 TKA sing 348 n n 
C30 H1 TKA sing 349 n n 
C30 H2 TKA sing 350 n n 
C31 H3 TKA sing 351 n n 
C32 H4 TKA sing 352 n n 
C32 H5 TKA sing 353 n n 
C33 H6 TKA sing 354 n n 
C34 H7 TKA sing 355 n n 
C34 H8 TKA sing 356 n n 
C37 H9 TKA sing 357 n n 
C37 H10 TKA sing 358 n n 
C36 H11 TKA sing 359 n n 
C36 H12 TKA sing 360 n n 
C38 H13 TKA sing 361 n n 
C38 H14 TKA sing 362 n n 
C35 H15 TKA sing 363 n n 
C25 H16 TKA sing 364 n n 
O03 H17 TKA sing 365 n n 
C22 H18 TKA sing 366 n n 
C22 H19 TKA sing 367 n n 
C20 H20 TKA sing 368 n n 
C21 H21 TKA sing 369 n n 
C21 H22 TKA sing 370 n n 
C21 H23 TKA sing 371 n n 
C17 H24 TKA sing 372 n n 
C14 H25 TKA sing 373 n n 
C15 H26 TKA sing 374 n n 
C15 H27 TKA sing 375 n n 
C16 H28 TKA sing 376 n n 
C16 H29 TKA sing 377 n n 
C12 H30 TKA sing 378 n n 
C12 H31 TKA sing 379 n n 
C11 H32 TKA sing 380 n n 
C11 H33 TKA sing 381 n n 
C09 H34 TKA sing 382 n n 
C09 H35 TKA sing 383 n n 
C18 H36 TKA sing 384 n n 
C18 H37 TKA sing 385 n n 
C18 H38 TKA sing 386 n n 
C07 H39 TKA sing 387 n n 
C06 H40 TKA sing 388 n n 
C04 H41 TKA sing 389 n n 
C04 H42 TKA sing 390 n n 
C03 H43 TKA sing 391 n n 
C01 H44 TKA sing 392 n n 
C10 H45 TKA sing 393 n n 
C10 H46 TKA sing 394 n n 
C28 H47 TKA sing 395 n n 
C28 H48 TKA sing 396 n n 
O01 H49 TKA sing 397 n n 
O02 H50 TKA sing 398 n n 
#
_atom_sites.entry_id                     3VTB 
_atom_sites.fract_transf_matrix[1][1]    0.006512 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000634 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TKA A 1 500 500 TKA TKA . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 10 HOH HOH . 
D 4 HOH A 10 610 11 HOH HOH . 
D 4 HOH A 11 611 12 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 14 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 16 HOH HOH . 
D 4 HOH A 16 616 17 HOH HOH . 
D 4 HOH A 17 617 18 HOH HOH . 
D 4 HOH A 18 618 19 HOH HOH . 
D 4 HOH A 19 619 20 HOH HOH . 
D 4 HOH A 20 620 21 HOH HOH . 
D 4 HOH A 21 621 22 HOH HOH . 
D 4 HOH A 22 622 23 HOH HOH . 
D 4 HOH A 23 623 24 HOH HOH . 
D 4 HOH A 24 624 25 HOH HOH . 
D 4 HOH A 25 625 26 HOH HOH . 
D 4 HOH A 26 626 27 HOH HOH . 
D 4 HOH A 27 627 28 HOH HOH . 
D 4 HOH A 28 628 29 HOH HOH . 
D 4 HOH A 29 629 30 HOH HOH . 
D 4 HOH A 30 630 31 HOH HOH . 
D 4 HOH A 31 631 32 HOH HOH . 
D 4 HOH A 32 632 33 HOH HOH . 
D 4 HOH A 33 633 34 HOH HOH . 
D 4 HOH A 34 634 35 HOH HOH . 
D 4 HOH A 35 635 36 HOH HOH . 
D 4 HOH A 36 636 37 HOH HOH . 
D 4 HOH A 37 637 38 HOH HOH . 
E 4 HOH B 1 701 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C29 TKA . . . C 3 9.772 -1.062 27.809 1 43.68 ? C29 TKA 500 A 1 
HETATM 2 C C30 TKA . . . C 3 8.792 -2.297 27.599 1 36.79 ? C30 TKA 500 A 1 
HETATM 3 C C31 TKA . . . C 3 7.301 -1.788 27.379 1 44.3 ? C31 TKA 500 A 1 
HETATM 4 C C32 TKA . . . C 3 6.84 -1.003 28.67 1 37.31 ? C32 TKA 500 A 1 
HETATM 5 C C33 TKA . . . C 3 7.788 0.266 28.913 1 42.67 ? C33 TKA 500 A 1 
HETATM 6 C C34 TKA . . . C 3 9.276 -0.235 29.137 1 40.97 ? C34 TKA 500 A 1 
HETATM 7 C C37 TKA . . . C 3 9.67 -0.105 26.528 1 37.57 ? C37 TKA 500 A 1 
HETATM 8 C C36 TKA . . . C 3 7.227 -0.833 26.103 1 39.27 ? C36 TKA 500 A 1 
HETATM 9 C C38 TKA . . . C 3 7.729 1.226 27.638 1 41.53 ? C38 TKA 500 A 1 
HETATM 10 C C35 TKA . . . C 3 8.19 0.42 26.33 1 42.55 ? C35 TKA 500 A 1 
HETATM 11 C C25 TKA . . . C 3 11.189 -1.695 27.948 1 45.17 ? C25 TKA 500 A 1 
HETATM 12 C C24 TKA . . . C 3 12.183 -0.662 28.147 1 48.52 ? C24 TKA 500 A 1 
HETATM 13 O O03 TKA . . . C 3 11.248 -2.581 29.077 1 43.71 ? O03 TKA 500 A 1 
HETATM 14 C C23 TKA . . . C 3 12.931 0.24 28.29 1 44.69 ? C23 TKA 500 A 1 
HETATM 15 C C22 TKA . . . C 3 13.761 1.4 28.443 1 40.95 ? C22 TKA 500 A 1 
HETATM 16 C C20 TKA . . . C 3 13.041 2.541 27.68 1 39.53 ? C20 TKA 500 A 1 
HETATM 17 C C21 TKA . . . C 3 11.908 3.098 28.624 1 39.79 ? C21 TKA 500 A 1 
HETATM 18 C C17 TKA . . . C 3 14.131 3.606 27.242 1 41.49 ? C17 TKA 500 A 1 
HETATM 19 C C13 TKA . . . C 3 13.665 4.833 26.398 1 38.53 ? C13 TKA 500 A 1 
HETATM 20 C C14 TKA . . . C 3 15.109 5.382 26.048 1 36.61 ? C14 TKA 500 A 1 
HETATM 21 C C15 TKA . . . C 3 15.842 4.132 25.482 1 35.74 ? C15 TKA 500 A 1 
HETATM 22 C C16 TKA . . . C 3 15.309 3.008 26.361 1 37.04 ? C16 TKA 500 A 1 
HETATM 23 C C12 TKA . . . C 3 12.904 5.972 27.212 1 35.61 ? C12 TKA 500 A 1 
HETATM 24 C C11 TKA . . . C 3 12.786 7.287 26.345 1 31.9 ? C11 TKA 500 A 1 
HETATM 25 C C09 TKA . . . C 3 14.2 7.759 25.904 1 38.09 ? C09 TKA 500 A 1 
HETATM 26 C C08 TKA . . . C 3 14.879 6.61 25.095 1 38.91 ? C08 TKA 500 A 1 
HETATM 27 C C18 TKA . . . C 3 12.746 4.361 25.145 1 38.81 ? C18 TKA 500 A 1 
HETATM 28 C C07 TKA . . . C 3 15.2 6.625 23.793 1 36.21 ? C07 TKA 500 A 1 
HETATM 29 C C06 TKA . . . C 3 14.996 7.719 22.859 1 39.8 ? C06 TKA 500 A 1 
HETATM 30 C C05 TKA . . . C 3 14.68 7.657 21.577 1 41.13 ? C05 TKA 500 A 1 
HETATM 31 C C04 TKA . . . C 3 14.542 8.994 20.817 1 40.67 ? C04 TKA 500 A 1 
HETATM 32 C C03 TKA . . . C 3 15.168 8.961 19.386 1 35.83 ? C03 TKA 500 A 1 
HETATM 33 C C02 TKA . . . C 3 14.677 7.729 18.57 1 37.6 ? C02 TKA 500 A 1 
HETATM 34 C C01 TKA . . . C 3 15.044 6.4 19.252 1 36.14 ? C01 TKA 500 A 1 
HETATM 35 C C10 TKA . . . C 3 14.438 6.389 20.703 1 37.42 ? C10 TKA 500 A 1 
HETATM 36 C C28 TKA . . . C 3 13.955 7.799 17.412 1 31.12 ? C28 TKA 500 A 1 
HETATM 37 O O01 TKA . . . C 3 14.482 5.31 18.463 1 40.72 ? O01 TKA 500 A 1 
HETATM 38 O O02 TKA . . . C 3 16.611 8.894 19.486 1 34.6 ? O02 TKA 500 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#