data_3VTF # _model_server_result.job_id S7t7vpYhc65BkAXcxJSlXw _model_server_result.datetime_utc '2024-11-05 01:16:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 3VTF # _exptl.entry_id 3VTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.8 _cell.angle_gamma 90 _cell.entry_id 3VTF _cell.length_a 117.652 _cell.length_b 76.739 _cell.length_c 75.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3VTF _atom_sites.fract_transf_matrix[1][1] 0.0085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UPG A 1 1001 1001 UPG UPG . C 3 EDO A 1 1002 2001 EDO EDO . D 4 HOH A 1 1101 1 HOH HOH . D 4 HOH A 2 1102 2 HOH HOH . D 4 HOH A 3 1103 3 HOH HOH . D 4 HOH A 4 1104 4 HOH HOH . D 4 HOH A 5 1105 5 HOH HOH . D 4 HOH A 6 1106 6 HOH HOH . D 4 HOH A 7 1107 7 HOH HOH . D 4 HOH A 8 1108 8 HOH HOH . D 4 HOH A 9 1109 9 HOH HOH . D 4 HOH A 10 1110 10 HOH HOH . D 4 HOH A 11 1111 11 HOH HOH . D 4 HOH A 12 1112 12 HOH HOH . D 4 HOH A 13 1113 13 HOH HOH . D 4 HOH A 14 1114 14 HOH HOH . D 4 HOH A 15 1115 15 HOH HOH . D 4 HOH A 16 1116 16 HOH HOH . D 4 HOH A 17 1117 17 HOH HOH . D 4 HOH A 18 1118 18 HOH HOH . D 4 HOH A 19 1119 19 HOH HOH . D 4 HOH A 20 1120 20 HOH HOH . D 4 HOH A 21 1121 21 HOH HOH . D 4 HOH A 22 1122 22 HOH HOH . D 4 HOH A 23 1123 23 HOH HOH . D 4 HOH A 24 1124 24 HOH HOH . D 4 HOH A 25 1125 25 HOH HOH . D 4 HOH A 26 1126 26 HOH HOH . D 4 HOH A 27 1127 27 HOH HOH . D 4 HOH A 28 1128 28 HOH HOH . D 4 HOH A 29 1129 29 HOH HOH . D 4 HOH A 30 1130 30 HOH HOH . D 4 HOH A 31 1131 31 HOH HOH . D 4 HOH A 32 1132 32 HOH HOH . D 4 HOH A 33 1133 33 HOH HOH . D 4 HOH A 34 1134 34 HOH HOH . D 4 HOH A 35 1135 35 HOH HOH . D 4 HOH A 36 1136 36 HOH HOH . D 4 HOH A 37 1137 37 HOH HOH . D 4 HOH A 38 1138 38 HOH HOH . D 4 HOH A 39 1139 39 HOH HOH . D 4 HOH A 40 1140 40 HOH HOH . D 4 HOH A 41 1141 41 HOH HOH . D 4 HOH A 42 1142 42 HOH HOH . D 4 HOH A 43 1143 43 HOH HOH . D 4 HOH A 44 1144 44 HOH HOH . D 4 HOH A 45 1145 45 HOH HOH . D 4 HOH A 46 1146 46 HOH HOH . D 4 HOH A 47 1147 47 HOH HOH . D 4 HOH A 48 1148 48 HOH HOH . D 4 HOH A 49 1149 49 HOH HOH . D 4 HOH A 50 1150 50 HOH HOH . D 4 HOH A 51 1151 51 HOH HOH . D 4 HOH A 52 1152 52 HOH HOH . D 4 HOH A 53 1153 53 HOH HOH . D 4 HOH A 54 1154 54 HOH HOH . D 4 HOH A 55 1155 55 HOH HOH . D 4 HOH A 56 1156 56 HOH HOH . D 4 HOH A 57 1157 57 HOH HOH . D 4 HOH A 58 1158 58 HOH HOH . D 4 HOH A 59 1159 59 HOH HOH . D 4 HOH A 60 1160 60 HOH HOH . D 4 HOH A 61 1161 61 HOH HOH . D 4 HOH A 62 1162 62 HOH HOH . D 4 HOH A 63 1163 63 HOH HOH . D 4 HOH A 64 1164 64 HOH HOH . D 4 HOH A 65 1165 65 HOH HOH . D 4 HOH A 66 1166 66 HOH HOH . D 4 HOH A 67 1167 67 HOH HOH . D 4 HOH A 68 1168 68 HOH HOH . D 4 HOH A 69 1169 69 HOH HOH . D 4 HOH A 70 1170 70 HOH HOH . D 4 HOH A 71 1171 71 HOH HOH . D 4 HOH A 72 1172 72 HOH HOH . D 4 HOH A 73 1173 73 HOH HOH . D 4 HOH A 74 1174 74 HOH HOH . D 4 HOH A 75 1175 75 HOH HOH . D 4 HOH A 76 1176 76 HOH HOH . D 4 HOH A 77 1177 77 HOH HOH . D 4 HOH A 78 1178 78 HOH HOH . D 4 HOH A 79 1179 79 HOH HOH . D 4 HOH A 80 1180 80 HOH HOH . D 4 HOH A 81 1181 81 HOH HOH . D 4 HOH A 82 1182 82 HOH HOH . D 4 HOH A 83 1183 83 HOH HOH . D 4 HOH A 84 1184 84 HOH HOH . D 4 HOH A 85 1185 85 HOH HOH . D 4 HOH A 86 1186 86 HOH HOH . D 4 HOH A 87 1187 87 HOH HOH . D 4 HOH A 88 1188 88 HOH HOH . D 4 HOH A 89 1189 89 HOH HOH . D 4 HOH A 90 1190 90 HOH HOH . D 4 HOH A 91 1191 91 HOH HOH . D 4 HOH A 92 1192 92 HOH HOH . D 4 HOH A 93 1193 93 HOH HOH . D 4 HOH A 94 1194 94 HOH HOH . D 4 HOH A 95 1195 95 HOH HOH . D 4 HOH A 96 1196 96 HOH HOH . D 4 HOH A 97 1197 97 HOH HOH . D 4 HOH A 98 1198 98 HOH HOH . D 4 HOH A 99 1199 99 HOH HOH . D 4 HOH A 100 1200 100 HOH HOH . D 4 HOH A 101 1201 101 HOH HOH . D 4 HOH A 102 1202 102 HOH HOH . D 4 HOH A 103 1203 103 HOH HOH . D 4 HOH A 104 1204 104 HOH HOH . D 4 HOH A 105 1205 105 HOH HOH . D 4 HOH A 106 1206 106 HOH HOH . D 4 HOH A 107 1207 107 HOH HOH . D 4 HOH A 108 1208 108 HOH HOH . D 4 HOH A 109 1209 109 HOH HOH . D 4 HOH A 110 1210 110 HOH HOH . D 4 HOH A 111 1211 111 HOH HOH . D 4 HOH A 112 1212 112 HOH HOH . D 4 HOH A 113 1213 113 HOH HOH . D 4 HOH A 114 1214 114 HOH HOH . D 4 HOH A 115 1215 115 HOH HOH . D 4 HOH A 116 1216 116 HOH HOH . D 4 HOH A 117 1217 117 HOH HOH . D 4 HOH A 118 1218 118 HOH HOH . D 4 HOH A 119 1219 119 HOH HOH . D 4 HOH A 120 1220 120 HOH HOH . D 4 HOH A 121 1221 121 HOH HOH . D 4 HOH A 122 1222 122 HOH HOH . D 4 HOH A 123 1223 123 HOH HOH . D 4 HOH A 124 1224 124 HOH HOH . D 4 HOH A 125 1225 125 HOH HOH . D 4 HOH A 126 1226 126 HOH HOH . D 4 HOH A 127 1227 127 HOH HOH . D 4 HOH A 128 1228 128 HOH HOH . D 4 HOH A 129 1229 129 HOH HOH . D 4 HOH A 130 1230 130 HOH HOH . D 4 HOH A 131 1231 131 HOH HOH . D 4 HOH A 132 1232 132 HOH HOH . D 4 HOH A 133 1233 133 HOH HOH . D 4 HOH A 134 1234 134 HOH HOH . D 4 HOH A 135 1235 135 HOH HOH . D 4 HOH A 136 1236 136 HOH HOH . D 4 HOH A 137 1237 137 HOH HOH . D 4 HOH A 138 1238 138 HOH HOH . D 4 HOH A 139 1239 139 HOH HOH . D 4 HOH A 140 1240 140 HOH HOH . D 4 HOH A 141 1241 141 HOH HOH . D 4 HOH A 142 1242 142 HOH HOH . D 4 HOH A 143 1243 143 HOH HOH . D 4 HOH A 144 1244 144 HOH HOH . D 4 HOH A 145 1245 145 HOH HOH . D 4 HOH A 146 1246 146 HOH HOH . D 4 HOH A 147 1247 147 HOH HOH . D 4 HOH A 148 1248 148 HOH HOH . D 4 HOH A 149 1249 149 HOH HOH . D 4 HOH A 150 1250 150 HOH HOH . D 4 HOH A 151 1251 151 HOH HOH . D 4 HOH A 152 1252 152 HOH HOH . D 4 HOH A 153 1253 153 HOH HOH . D 4 HOH A 154 1254 154 HOH HOH . D 4 HOH A 155 1255 155 HOH HOH . D 4 HOH A 156 1256 156 HOH HOH . D 4 HOH A 157 1257 157 HOH HOH . D 4 HOH A 158 1258 158 HOH HOH . D 4 HOH A 159 1259 159 HOH HOH . D 4 HOH A 160 1260 160 HOH HOH . D 4 HOH A 161 1261 161 HOH HOH . D 4 HOH A 162 1262 162 HOH HOH . D 4 HOH A 163 1263 163 HOH HOH . D 4 HOH A 164 1264 164 HOH HOH . D 4 HOH A 165 1265 165 HOH HOH . D 4 HOH A 166 1266 166 HOH HOH . D 4 HOH A 167 1267 167 HOH HOH . D 4 HOH A 168 1268 168 HOH HOH . D 4 HOH A 169 1269 169 HOH HOH . D 4 HOH A 170 1270 170 HOH HOH . D 4 HOH A 171 1271 171 HOH HOH . D 4 HOH A 172 1272 172 HOH HOH . D 4 HOH A 173 1273 173 HOH HOH . D 4 HOH A 174 1274 174 HOH HOH . D 4 HOH A 175 1275 175 HOH HOH . D 4 HOH A 176 1276 176 HOH HOH . D 4 HOH A 177 1277 177 HOH HOH . D 4 HOH A 178 1278 178 HOH HOH . D 4 HOH A 179 1279 179 HOH HOH . D 4 HOH A 180 1280 180 HOH HOH . D 4 HOH A 181 1281 181 HOH HOH . D 4 HOH A 182 1282 182 HOH HOH . D 4 HOH A 183 1283 183 HOH HOH . D 4 HOH A 184 1284 184 HOH HOH . D 4 HOH A 185 1285 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 37.068 70.208 -15.754 1 41.12 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . C 3 38.21 70.452 -14.97 1 31.48 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . C 3 36.29 71.493 -15.952 1 38.36 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . C 3 35.779 71.473 -17.278 1 29.67 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #