data_3VTJ # _model_server_result.job_id PQHV7HCF-wij09vQWaIkLQ _model_server_result.datetime_utc '2024-10-19 12:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3VTJ # _exptl.entry_id 3VTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VTJ _cell.length_a 94.558 _cell.length_b 94.558 _cell.length_c 114.183 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 361 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 361 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.257 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3VTJ _atom_sites.fract_transf_matrix[1][1] 0.010576 _atom_sites.fract_transf_matrix[1][2] 0.006106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 41.198 8.263 21.962 1 29.5 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 39.493 8.364 17.253 1 32.22 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 43.987 8.818 15.631 1 32.7 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 45.712 8.629 20.302 1 29.84 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 40.384 8.308 20.77 1 29.92 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 38.913 8.238 20.913 1 30.51 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 38.423 8.27 19.523 1 31.23 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 39.642 8.368 18.682 1 31.05 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 36.993 8.259 19.045 1 32.23 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 38.111 8.128 22.192 1 30.94 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 37.364 9.356 22.667 1 32.65 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 36.641 8.995 23.957 1 33.5 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 35.775 9.789 24.371 1 34.92 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 36.904 7.903 24.546 1 32.77 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 40.604 8.471 16.355 1 32.7 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 40.431 8.319 14.897 1 34.11 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 41.789 8.436 14.446 1 34.16 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 42.562 8.662 15.665 1 32.72 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 39.196 8.104 14.085 1 35.76 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 42.271 8.39 13.041 1 35.82 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 43.455 7.894 12.748 1 36.2 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 44.789 8.972 16.807 1 31.85 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 46.189 9.428 16.662 1 32.52 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 46.69 9.359 18.018 1 31.62 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 45.574 8.879 18.884 1 30.55 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 46.944 9.896 15.44 1 34.09 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 48.074 9.802 18.328 1 32.01 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 48.563 9.721 19.527 1 32.07 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 44.587 8.48 21.215 1 29.29 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 44.786 8.203 22.66 1 29.22 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 43.423 8.087 23.14 1 29.33 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 42.63 8.341 21.923 1 29.26 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 46.045 8.079 23.453 1 29.68 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 42.925 7.894 24.552 1 29.92 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 42.699 9.34 25.084 1 30.65 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 42.02 9.383 26.443 1 31.78 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 42.064 10.444 27.117 1 32.53 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 41.43 8.354 26.847 1 32.05 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 40.907 8.182 19.388 1 30.15 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 41.865 8.611 16.819 1 31.85 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 44.393 8.433 18.131 1 30.67 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 43.309 8.494 20.764 1 29.47 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 42.633 8.916 18.777 1 29.9 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #