data_3VTM # _model_server_result.job_id fxtkDo3AivXYNKHe582x1w _model_server_result.datetime_utc '2024-10-14 07:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vtm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3VTM # _exptl.entry_id 3VTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 675.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING INDIUM' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VTM _cell.length_a 49.46 _cell.length_b 71.01 _cell.length_c 75.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 100 A TYR 642 1_555 C IN 3ZZ . A 3ZZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 B OH TYR 100 B TYR 642 1_555 E IN 3ZZ . B 3ZZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C34 H32 In N4 O4' _chem_comp.formula_weight 675.46 _chem_comp.id 3ZZ _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING INDIUM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMB C2B 3ZZ sing 1 n n CMA C3A 3ZZ sing 2 n n O1A CGA 3ZZ doub 3 n n CBB CAB 3ZZ doub 4 n n C2B C1B 3ZZ doub 5 n y C2B C3B 3ZZ sing 6 n y CHB C1B 3ZZ sing 7 n n CHB C4A 3ZZ doub 8 n n C3A C4A 3ZZ sing 9 n n C3A C2A 3ZZ doub 10 n n CGA O2A 3ZZ sing 11 n n CGA CBA 3ZZ sing 12 n n C1B NB 3ZZ sing 13 n y C4A NA 3ZZ sing 14 n n C3B CAB 3ZZ sing 15 n n C3B C4B 3ZZ doub 16 n y CAA C2A 3ZZ sing 17 n n CAA CBA 3ZZ sing 18 n n C2A C1A 3ZZ sing 19 n n NB C4B 3ZZ sing 20 n y NB IN 3ZZ sing 21 n n C4B CHC 3ZZ sing 22 n n NA C1A 3ZZ doub 23 n n NA IN 3ZZ sing 24 n n C1A CHA 3ZZ sing 25 n n CHC C1C 3ZZ doub 26 z n IN ND 3ZZ sing 27 n n CHA C4D 3ZZ doub 28 n n C1C NC 3ZZ sing 29 n n C1C C2C 3ZZ sing 30 n n NC C4C 3ZZ sing 31 n n C4D ND 3ZZ sing 32 n y C4D C3D 3ZZ sing 33 n y ND C1D 3ZZ sing 34 n y C2C CMC 3ZZ sing 35 n n C2C C3C 3ZZ doub 36 n n C4C C3C 3ZZ sing 37 n n C4C CHD 3ZZ sing 38 n n C3D CAD 3ZZ sing 39 n n C3D C2D 3ZZ doub 40 n y C1D CHD 3ZZ doub 41 z n C1D C2D 3ZZ sing 42 n y CAD CBD 3ZZ sing 43 n n C3C CAC 3ZZ sing 44 n n CBD CGD 3ZZ sing 45 n n C2D CMD 3ZZ sing 46 n n O2D CGD 3ZZ doub 47 n n CGD O1D 3ZZ sing 48 n n CAC CBC 3ZZ doub 49 n n CHA H1 3ZZ sing 50 n n CAA H2 3ZZ sing 51 n n CAA H3 3ZZ sing 52 n n CBA H4 3ZZ sing 53 n n CBA H5 3ZZ sing 54 n n O2A H6 3ZZ sing 55 n n CMA H7 3ZZ sing 56 n n CMA H8 3ZZ sing 57 n n CMA H9 3ZZ sing 58 n n CHB H10 3ZZ sing 59 n n CMB H11 3ZZ sing 60 n n CMB H12 3ZZ sing 61 n n CMB H13 3ZZ sing 62 n n CAB H14 3ZZ sing 63 n n CBB H15 3ZZ sing 64 n n CBB H16 3ZZ sing 65 n n CHC H17 3ZZ sing 66 n n CMC H18 3ZZ sing 67 n n CMC H19 3ZZ sing 68 n n CMC H20 3ZZ sing 69 n n CAC H21 3ZZ sing 70 n n CBC H22 3ZZ sing 71 n n CBC H23 3ZZ sing 72 n n CHD H24 3ZZ sing 73 n n CMD H25 3ZZ sing 74 n n CMD H26 3ZZ sing 75 n n CMD H27 3ZZ sing 76 n n CAD H28 3ZZ sing 77 n n CAD H29 3ZZ sing 78 n n CBD H30 3ZZ sing 79 n n CBD H31 3ZZ sing 80 n n O1D H32 3ZZ sing 81 n n IN NC 3ZZ sing 82 n n # _atom_sites.entry_id 3VTM _atom_sites.fract_transf_matrix[1][1] 0.020218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3ZZ A 1 701 700 3ZZ ZZZ . D 3 GOL A 1 702 11 GOL GOL . E 2 3ZZ B 1 701 700 3ZZ ZZZ . F 3 GOL B 1 702 12 GOL GOL . G 4 HOH A 1 801 1 HOH HOH . G 4 HOH A 2 802 2 HOH HOH . G 4 HOH A 3 803 4 HOH HOH . G 4 HOH A 4 804 5 HOH HOH . G 4 HOH A 5 805 10 HOH HOH . G 4 HOH A 6 806 11 HOH HOH . G 4 HOH A 7 807 12 HOH HOH . G 4 HOH A 8 808 13 HOH HOH . G 4 HOH A 9 809 15 HOH HOH . H 4 HOH B 1 801 3 HOH HOH . H 4 HOH B 2 802 6 HOH HOH . H 4 HOH B 3 803 7 HOH HOH . H 4 HOH B 4 804 8 HOH HOH . H 4 HOH B 5 805 9 HOH HOH . H 4 HOH B 6 806 14 HOH HOH . H 4 HOH B 7 807 16 HOH HOH . H 4 HOH B 8 808 17 HOH HOH . H 4 HOH B 9 809 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA 3ZZ . . . C 2 -8.815 22.787 -2.222 1 20.67 ? CHA 3ZZ 701 A 1 HETATM 2 C C1A 3ZZ . . . C 2 -9.463 22.28 -3.322 1 22.27 ? C1A 3ZZ 701 A 1 HETATM 3 C C2A 3ZZ . . . C 2 -10.139 23.052 -4.359 1 24.5 ? C2A 3ZZ 701 A 1 HETATM 4 C CAA 3ZZ . . . C 2 -10.298 24.63 -4.452 1 25.53 ? CAA 3ZZ 701 A 1 HETATM 5 C CBA 3ZZ . . . C 2 -9.133 25.553 -4.017 1 26.76 ? CBA 3ZZ 701 A 1 HETATM 6 C CGA 3ZZ . . . C 2 -8.195 25.918 -5.171 1 30.31 ? CGA 3ZZ 701 A 1 HETATM 7 O O1A 3ZZ . . . C 2 -8.701 26.144 -6.323 1 30.61 ? O1A 3ZZ 701 A 1 HETATM 8 O O2A 3ZZ . . . C 2 -6.927 25.989 -4.966 1 29.49 ? O2A 3ZZ 701 A 1 HETATM 9 C C3A 3ZZ . . . C 2 -10.653 22.127 -5.239 1 24.28 ? C3A 3ZZ 701 A 1 HETATM 10 C CMA 3ZZ . . . C 2 -11.454 22.443 -6.532 1 24.15 ? CMA 3ZZ 701 A 1 HETATM 11 C C4A 3ZZ . . . C 2 -10.317 20.773 -4.794 1 22.09 ? C4A 3ZZ 701 A 1 HETATM 12 N NA 3ZZ . . . C 2 -9.564 20.923 -3.655 1 21.82 ? NA 3ZZ 701 A 1 HETATM 13 C CHB 3ZZ . . . C 2 -10.6 19.58 -5.433 1 20.92 ? CHB 3ZZ 701 A 1 HETATM 14 C C1B 3ZZ . . . C 2 -10.366 18.303 -4.95 1 19.55 ? C1B 3ZZ 701 A 1 HETATM 15 C C2B 3ZZ . . . C 2 -10.892 17.028 -5.439 1 18 ? C2B 3ZZ 701 A 1 HETATM 16 C CMB 3ZZ . . . C 2 -11.827 16.894 -6.647 1 17.23 ? CMB 3ZZ 701 A 1 HETATM 17 C C3B 3ZZ . . . C 2 -10.391 16.048 -4.656 1 17.99 ? C3B 3ZZ 701 A 1 HETATM 18 C CAB 3ZZ . . . C 2 -10.56 14.499 -4.611 1 17.06 ? CAB 3ZZ 701 A 1 HETATM 19 C CBB 3ZZ . . . C 2 -10.779 13.683 -5.636 1 17.35 ? CBB 3ZZ 701 A 1 HETATM 20 C C4B 3ZZ . . . C 2 -9.554 16.689 -3.67 1 18.43 ? C4B 3ZZ 701 A 1 HETATM 21 N NB 3ZZ . . . C 2 -9.521 18.042 -3.901 1 19.63 ? NB 3ZZ 701 A 1 HETATM 22 C CHC 3ZZ . . . C 2 -8.864 15.999 -2.721 1 17.87 ? CHC 3ZZ 701 A 1 HETATM 23 C C1C 3ZZ . . . C 2 -8.445 16.437 -1.526 1 18.15 ? C1C 3ZZ 701 A 1 HETATM 24 C C2C 3ZZ . . . C 2 -8.114 15.641 -0.365 1 18.72 ? C2C 3ZZ 701 A 1 HETATM 25 C CMC 3ZZ . . . C 2 -8.198 14.089 -0.289 1 18.58 ? CMC 3ZZ 701 A 1 HETATM 26 C C3C 3ZZ . . . C 2 -7.72 16.493 0.594 1 18.83 ? C3C 3ZZ 701 A 1 HETATM 27 C CAC 3ZZ . . . C 2 -7.3 16.173 2.048 1 18.52 ? CAC 3ZZ 701 A 1 HETATM 28 C CBC 3ZZ . . . C 2 -6.501 15.156 2.345 1 18.56 ? CBC 3ZZ 701 A 1 HETATM 29 C C4C 3ZZ . . . C 2 -7.812 17.835 0.05 1 19.87 ? C4C 3ZZ 701 A 1 HETATM 30 N NC 3ZZ . . . C 2 -8.215 17.739 -1.26 1 20.01 ? NC 3ZZ 701 A 1 HETATM 31 C CHD 3ZZ . . . C 2 -7.53 19.023 0.698 1 20.18 ? CHD 3ZZ 701 A 1 HETATM 32 C C1D 3ZZ . . . C 2 -7.807 20.302 0.252 1 20.46 ? C1D 3ZZ 701 A 1 HETATM 33 C C2D 3ZZ . . . C 2 -7.598 21.498 1.037 1 20.74 ? C2D 3ZZ 701 A 1 HETATM 34 C CMD 3ZZ . . . C 2 -7.09 21.598 2.491 1 20.85 ? CMD 3ZZ 701 A 1 HETATM 35 C C3D 3ZZ . . . C 2 -8 22.673 0.144 1 20.27 ? C3D 3ZZ 701 A 1 HETATM 36 C CAD 3ZZ . . . C 2 -7.981 24.155 0.544 1 19.61 ? CAD 3ZZ 701 A 1 HETATM 37 C CBD 3ZZ . . . C 2 -9.436 24.559 0.691 1 19.04 ? CBD 3ZZ 701 A 1 HETATM 38 C CGD 3ZZ . . . C 2 -10.052 23.985 1.935 1 19.13 ? CGD 3ZZ 701 A 1 HETATM 39 O O1D 3ZZ . . . C 2 -9.325 23.778 2.941 1 19.2 ? O1D 3ZZ 701 A 1 HETATM 40 O O2D 3ZZ . . . C 2 -11.293 23.766 1.929 1 18.84 ? O2D 3ZZ 701 A 1 HETATM 41 C C4D 3ZZ . . . C 2 -8.39 22.083 -1.115 1 20.85 ? C4D 3ZZ 701 A 1 HETATM 42 N ND 3ZZ . . . C 2 -8.241 20.689 -1.007 1 20.68 ? ND 3ZZ 701 A 1 HETATM 43 IN IN 3ZZ . . . C 2 -8.86 19.383 -2.533 1 23.29 ? IN 3ZZ 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #