data_3VTM
#
_model_server_result.job_id            ReVW0O5g_NX27TjcogRX8Q 
_model_server_result.datetime_utc      '2024-10-14 07:25:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vtm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    3VTM 
#
_exptl.entry_id    3VTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              675.46 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING INDIUM' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VTM 
_cell.length_a            49.46 
_cell.length_b            71.01 
_cell.length_c            75.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 100 A TYR 642 1_555 C IN 3ZZ . A 3ZZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc2 B OH TYR 100 B TYR 642 1_555 E IN 3ZZ . B 3ZZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'C34 H32 In N4 O4' 
_chem_comp.formula_weight    675.46 
_chem_comp.id                3ZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING INDIUM' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CMB C2B 3ZZ sing 1 n n 
CMA C3A 3ZZ sing 2 n n 
O1A CGA 3ZZ doub 3 n n 
CBB CAB 3ZZ doub 4 n n 
C2B C1B 3ZZ doub 5 n y 
C2B C3B 3ZZ sing 6 n y 
CHB C1B 3ZZ sing 7 n n 
CHB C4A 3ZZ doub 8 n n 
C3A C4A 3ZZ sing 9 n n 
C3A C2A 3ZZ doub 10 n n 
CGA O2A 3ZZ sing 11 n n 
CGA CBA 3ZZ sing 12 n n 
C1B NB 3ZZ sing 13 n y 
C4A NA 3ZZ sing 14 n n 
C3B CAB 3ZZ sing 15 n n 
C3B C4B 3ZZ doub 16 n y 
CAA C2A 3ZZ sing 17 n n 
CAA CBA 3ZZ sing 18 n n 
C2A C1A 3ZZ sing 19 n n 
NB C4B 3ZZ sing 20 n y 
NB IN 3ZZ sing 21 n n 
C4B CHC 3ZZ sing 22 n n 
NA C1A 3ZZ doub 23 n n 
NA IN 3ZZ sing 24 n n 
C1A CHA 3ZZ sing 25 n n 
CHC C1C 3ZZ doub 26 z n 
IN ND 3ZZ sing 27 n n 
CHA C4D 3ZZ doub 28 n n 
C1C NC 3ZZ sing 29 n n 
C1C C2C 3ZZ sing 30 n n 
NC C4C 3ZZ sing 31 n n 
C4D ND 3ZZ sing 32 n y 
C4D C3D 3ZZ sing 33 n y 
ND C1D 3ZZ sing 34 n y 
C2C CMC 3ZZ sing 35 n n 
C2C C3C 3ZZ doub 36 n n 
C4C C3C 3ZZ sing 37 n n 
C4C CHD 3ZZ sing 38 n n 
C3D CAD 3ZZ sing 39 n n 
C3D C2D 3ZZ doub 40 n y 
C1D CHD 3ZZ doub 41 z n 
C1D C2D 3ZZ sing 42 n y 
CAD CBD 3ZZ sing 43 n n 
C3C CAC 3ZZ sing 44 n n 
CBD CGD 3ZZ sing 45 n n 
C2D CMD 3ZZ sing 46 n n 
O2D CGD 3ZZ doub 47 n n 
CGD O1D 3ZZ sing 48 n n 
CAC CBC 3ZZ doub 49 n n 
CHA H1 3ZZ sing 50 n n 
CAA H2 3ZZ sing 51 n n 
CAA H3 3ZZ sing 52 n n 
CBA H4 3ZZ sing 53 n n 
CBA H5 3ZZ sing 54 n n 
O2A H6 3ZZ sing 55 n n 
CMA H7 3ZZ sing 56 n n 
CMA H8 3ZZ sing 57 n n 
CMA H9 3ZZ sing 58 n n 
CHB H10 3ZZ sing 59 n n 
CMB H11 3ZZ sing 60 n n 
CMB H12 3ZZ sing 61 n n 
CMB H13 3ZZ sing 62 n n 
CAB H14 3ZZ sing 63 n n 
CBB H15 3ZZ sing 64 n n 
CBB H16 3ZZ sing 65 n n 
CHC H17 3ZZ sing 66 n n 
CMC H18 3ZZ sing 67 n n 
CMC H19 3ZZ sing 68 n n 
CMC H20 3ZZ sing 69 n n 
CAC H21 3ZZ sing 70 n n 
CBC H22 3ZZ sing 71 n n 
CBC H23 3ZZ sing 72 n n 
CHD H24 3ZZ sing 73 n n 
CMD H25 3ZZ sing 74 n n 
CMD H26 3ZZ sing 75 n n 
CMD H27 3ZZ sing 76 n n 
CAD H28 3ZZ sing 77 n n 
CAD H29 3ZZ sing 78 n n 
CBD H30 3ZZ sing 79 n n 
CBD H31 3ZZ sing 80 n n 
O1D H32 3ZZ sing 81 n n 
IN NC 3ZZ sing 82 n n 
#
_atom_sites.entry_id                     3VTM 
_atom_sites.fract_transf_matrix[1][1]    0.020218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3ZZ A 1 701 700 3ZZ ZZZ . 
D 3 GOL A 1 702 11 GOL GOL . 
E 2 3ZZ B 1 701 700 3ZZ ZZZ . 
F 3 GOL B 1 702 12 GOL GOL . 
G 4 HOH A 1 801 1 HOH HOH . 
G 4 HOH A 2 802 2 HOH HOH . 
G 4 HOH A 3 803 4 HOH HOH . 
G 4 HOH A 4 804 5 HOH HOH . 
G 4 HOH A 5 805 10 HOH HOH . 
G 4 HOH A 6 806 11 HOH HOH . 
G 4 HOH A 7 807 12 HOH HOH . 
G 4 HOH A 8 808 13 HOH HOH . 
G 4 HOH A 9 809 15 HOH HOH . 
H 4 HOH B 1 801 3 HOH HOH . 
H 4 HOH B 2 802 6 HOH HOH . 
H 4 HOH B 3 803 7 HOH HOH . 
H 4 HOH B 4 804 8 HOH HOH . 
H 4 HOH B 5 805 9 HOH HOH . 
H 4 HOH B 6 806 14 HOH HOH . 
H 4 HOH B 7 807 16 HOH HOH . 
H 4 HOH B 8 808 17 HOH HOH . 
H 4 HOH B 9 809 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA 3ZZ . . . E 2 -15.916 22.644 -7.293 1 18.27 ? CHA 3ZZ 701 B 1 
HETATM 2 C C1A 3ZZ . . . E 2 -15.315 22.134 -6.214 1 18.92 ? C1A 3ZZ 701 B 1 
HETATM 3 C C2A 3ZZ . . . E 2 -14.664 22.872 -5.145 1 20.89 ? C2A 3ZZ 701 B 1 
HETATM 4 C CAA 3ZZ . . . E 2 -14.543 24.429 -5.022 1 20.42 ? CAA 3ZZ 701 B 1 
HETATM 5 C CBA 3ZZ . . . E 2 -15.859 25.173 -5.282 1 20.37 ? CBA 3ZZ 701 B 1 
HETATM 6 C CGA 3ZZ . . . E 2 -16.853 24.804 -4.185 1 21.68 ? CGA 3ZZ 701 B 1 
HETATM 7 O O1A 3ZZ . . . E 2 -16.333 24.678 -3.025 1 22.09 ? O1A 3ZZ 701 B 1 
HETATM 8 O O2A 3ZZ . . . E 2 -18.124 24.64 -4.42 1 20.23 ? O2A 3ZZ 701 B 1 
HETATM 9 C C3A 3ZZ . . . E 2 -14.174 21.95 -4.265 1 21.28 ? C3A 3ZZ 701 B 1 
HETATM 10 C CMA 3ZZ . . . E 2 -13.407 22.227 -2.959 1 21.2 ? CMA 3ZZ 701 B 1 
HETATM 11 C C4A 3ZZ . . . E 2 -14.495 20.621 -4.747 1 20.26 ? C4A 3ZZ 701 B 1 
HETATM 12 N NA 3ZZ . . . E 2 -15.211 20.794 -5.917 1 20.36 ? NA 3ZZ 701 B 1 
HETATM 13 C CHB 3ZZ . . . E 2 -14.166 19.438 -4.132 1 19.21 ? CHB 3ZZ 701 B 1 
HETATM 14 C C1B 3ZZ . . . E 2 -14.375 18.141 -4.57 1 18.41 ? C1B 3ZZ 701 B 1 
HETATM 15 C C2B 3ZZ . . . E 2 -13.899 16.926 -3.943 1 17.57 ? C2B 3ZZ 701 B 1 
HETATM 16 C CMB 3ZZ . . . E 2 -13.024 16.993 -2.664 1 17.48 ? CMB 3ZZ 701 B 1 
HETATM 17 C C3B 3ZZ . . . E 2 -14.359 15.859 -4.659 1 17.16 ? C3B 3ZZ 701 B 1 
HETATM 18 C CAB 3ZZ . . . E 2 -14.181 14.324 -4.539 1 16.32 ? CAB 3ZZ 701 B 1 
HETATM 19 C CBB 3ZZ . . . E 2 -13.721 13.687 -3.472 1 16.2 ? CBB 3ZZ 701 B 1 
HETATM 20 C C4B 3ZZ . . . E 2 -15.125 16.379 -5.758 1 17.77 ? C4B 3ZZ 701 B 1 
HETATM 21 N NB 3ZZ . . . E 2 -15.127 17.76 -5.64 1 19.05 ? NB 3ZZ 701 B 1 
HETATM 22 C CHC 3ZZ . . . E 2 -15.763 15.629 -6.726 1 17.16 ? CHC 3ZZ 701 B 1 
HETATM 23 C C1C 3ZZ . . . E 2 -16.262 16.117 -7.901 1 18.17 ? C1C 3ZZ 701 B 1 
HETATM 24 C C2C 3ZZ . . . E 2 -16.647 15.412 -9.108 1 19.24 ? C2C 3ZZ 701 B 1 
HETATM 25 C CMC 3ZZ . . . E 2 -16.563 13.873 -9.32 1 19.77 ? CMC 3ZZ 701 B 1 
HETATM 26 C C3C 3ZZ . . . E 2 -17.096 16.315 -9.994 1 19.32 ? C3C 3ZZ 701 B 1 
HETATM 27 C CAC 3ZZ . . . E 2 -17.6 16.124 -11.446 1 20.68 ? CAC 3ZZ 701 B 1 
HETATM 28 C CBC 3ZZ . . . E 2 -18.042 14.944 -11.945 1 21.98 ? CBC 3ZZ 701 B 1 
HETATM 29 C C4C 3ZZ . . . E 2 -16.994 17.607 -9.392 1 19.84 ? C4C 3ZZ 701 B 1 
HETATM 30 N NC 3ZZ . . . E 2 -16.512 17.439 -8.126 1 19.86 ? NC 3ZZ 701 B 1 
HETATM 31 C CHD 3ZZ . . . E 2 -17.33 18.799 -9.988 1 20.59 ? CHD 3ZZ 701 B 1 
HETATM 32 C C1D 3ZZ . . . E 2 -17.027 20.086 -9.594 1 21.1 ? C1D 3ZZ 701 B 1 
HETATM 33 C C2D 3ZZ . . . E 2 -17.232 21.23 -10.436 1 21.76 ? C2D 3ZZ 701 B 1 
HETATM 34 C CMD 3ZZ . . . E 2 -17.784 21.132 -11.87 1 21.85 ? CMD 3ZZ 701 B 1 
HETATM 35 C C3D 3ZZ . . . E 2 -16.786 22.463 -9.62 1 21.37 ? C3D 3ZZ 701 B 1 
HETATM 36 C CAD 3ZZ . . . E 2 -16.802 23.947 -10.053 1 22.85 ? CAD 3ZZ 701 B 1 
HETATM 37 C CBD 3ZZ . . . E 2 -15.381 24.493 -10.156 1 24.77 ? CBD 3ZZ 701 B 1 
HETATM 38 C CGD 3ZZ . . . E 2 -14.749 23.951 -11.413 1 27.23 ? CGD 3ZZ 701 B 1 
HETATM 39 O O1D 3ZZ . . . E 2 -15.447 24.001 -12.471 1 28.56 ? O1D 3ZZ 701 B 1 
HETATM 40 O O2D 3ZZ . . . E 2 -13.574 23.469 -11.351 1 28.21 ? O2D 3ZZ 701 B 1 
HETATM 41 C C4D 3ZZ . . . E 2 -16.36 21.926 -8.35 1 20.07 ? C4D 3ZZ 701 B 1 
HETATM 42 N ND 3ZZ . . . E 2 -16.553 20.546 -8.372 1 20.9 ? ND 3ZZ 701 B 1 
HETATM 43 IN IN 3ZZ . . . E 2 -15.881 19.141 -6.969 1 22.29 ? IN 3ZZ 701 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#