data_3VU8
#
_model_server_result.job_id            8AvG01rUsgEyEn5ca6OZWw 
_model_server_result.datetime_utc      '2025-03-05 01:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vu8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    3VU8 
#
_exptl.entry_id    3VU8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.531 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VU8 
_cell.length_a            50.823 
_cell.length_b            82.682 
_cell.length_c            120.165 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 127 A CYS 127 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc2 A SG CYS 130 A CYS 130 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 A SG CYS 144 A CYS 144 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc4 A ND1 HIS 147 A HIS 147 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
#
_chem_comp.formula           'C15 H24 N8 O6 S2' 
_chem_comp.formula_weight    476.531 
_chem_comp.id                MDS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 MDS sing 218 n n 
O1 HO1 MDS sing 219 n n 
C1 C2 MDS sing 220 n n 
C1 C10 MDS sing 221 n n 
C1 H1 MDS sing 222 n n 
C2 O2 MDS sing 223 n n 
C2 N4 MDS sing 224 n n 
C2 H2 MDS sing 225 n n 
O2 C3 MDS sing 226 n n 
C3 C4 MDS sing 227 n n 
C3 C10 MDS sing 228 n n 
C3 H3 MDS sing 229 n n 
C4 N1 MDS sing 230 n n 
C4 H41 MDS sing 231 n n 
C4 H42 MDS sing 232 n n 
N1 S1 MDS sing 233 n n 
N1 HN1 MDS sing 234 n n 
S1 O3 MDS doub 235 n n 
S1 O4 MDS doub 236 n n 
S1 N2 MDS sing 237 n n 
N2 C5 MDS sing 238 n n 
N2 HN2 MDS sing 239 n n 
C5 O5 MDS doub 240 n n 
C5 C6 MDS sing 241 n n 
C6 N3 MDS sing 242 n n 
C6 C7 MDS sing 243 n n 
C6 H6 MDS sing 244 n n 
N3 HN31 MDS sing 245 n n 
N3 HN32 MDS sing 246 n n 
C7 C8 MDS sing 247 n n 
C7 H71 MDS sing 248 n n 
C7 H72 MDS sing 249 n n 
C8 S2 MDS sing 250 n n 
C8 H81 MDS sing 251 n n 
C8 H82 MDS sing 252 n n 
S2 C9 MDS sing 253 n n 
C9 H91 MDS sing 254 n n 
C9 H92 MDS sing 255 n n 
C9 H93 MDS sing 256 n n 
C10 O6 MDS sing 257 n n 
C10 H10 MDS sing 258 n n 
O6 HO6 MDS sing 259 n n 
N4 C11 MDS sing 260 n y 
N4 C15 MDS sing 261 n y 
C11 N5 MDS doub 262 n y 
C11 H11 MDS sing 263 n n 
N5 C12 MDS sing 264 n y 
C12 C13 MDS doub 265 n y 
C12 C15 MDS sing 266 n y 
C13 N6 MDS sing 267 n y 
C13 N8 MDS sing 268 n n 
N6 C14 MDS doub 269 n y 
C14 N7 MDS sing 270 n y 
C14 H14 MDS sing 271 n n 
N7 C15 MDS doub 272 n y 
N8 HN81 MDS sing 273 n n 
N8 HN82 MDS sing 274 n n 
#
_atom_sites.entry_id                     3VU8 
_atom_sites.fract_transf_matrix[1][1]    0.019676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 1000 ZN ZN . 
C 3 MDS A 1 602 550 MDS MDS . 
D 4 HOH A 1 701 1 HOH HOH . 
D 4 HOH A 2 702 2 HOH HOH . 
D 4 HOH A 3 703 3 HOH HOH . 
D 4 HOH A 4 704 4 HOH HOH . 
D 4 HOH A 5 705 5 HOH HOH . 
D 4 HOH A 6 706 6 HOH HOH . 
D 4 HOH A 7 707 7 HOH HOH . 
D 4 HOH A 8 708 8 HOH HOH . 
D 4 HOH A 9 709 9 HOH HOH . 
D 4 HOH A 10 710 10 HOH HOH . 
D 4 HOH A 11 711 11 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 13 HOH HOH . 
D 4 HOH A 14 714 14 HOH HOH . 
D 4 HOH A 15 715 15 HOH HOH . 
D 4 HOH A 16 716 16 HOH HOH . 
D 4 HOH A 17 717 17 HOH HOH . 
D 4 HOH A 18 718 18 HOH HOH . 
D 4 HOH A 19 719 19 HOH HOH . 
D 4 HOH A 20 720 20 HOH HOH . 
D 4 HOH A 21 721 21 HOH HOH . 
D 4 HOH A 22 722 22 HOH HOH . 
D 4 HOH A 23 723 23 HOH HOH . 
D 4 HOH A 24 724 24 HOH HOH . 
D 4 HOH A 25 725 25 HOH HOH . 
D 4 HOH A 26 726 26 HOH HOH . 
D 4 HOH A 27 727 27 HOH HOH . 
D 4 HOH A 28 728 28 HOH HOH . 
D 4 HOH A 29 729 29 HOH HOH . 
D 4 HOH A 30 730 30 HOH HOH . 
D 4 HOH A 31 731 31 HOH HOH . 
D 4 HOH A 32 732 32 HOH HOH . 
D 4 HOH A 33 733 33 HOH HOH . 
D 4 HOH A 34 734 34 HOH HOH . 
D 4 HOH A 35 735 35 HOH HOH . 
D 4 HOH A 36 736 36 HOH HOH . 
D 4 HOH A 37 737 37 HOH HOH . 
D 4 HOH A 38 738 38 HOH HOH . 
D 4 HOH A 39 739 39 HOH HOH . 
D 4 HOH A 40 740 40 HOH HOH . 
D 4 HOH A 41 741 41 HOH HOH . 
D 4 HOH A 42 742 42 HOH HOH . 
D 4 HOH A 43 743 43 HOH HOH . 
D 4 HOH A 44 744 44 HOH HOH . 
D 4 HOH A 45 745 45 HOH HOH . 
D 4 HOH A 46 746 46 HOH HOH . 
D 4 HOH A 47 747 47 HOH HOH . 
D 4 HOH A 48 748 48 HOH HOH . 
D 4 HOH A 49 749 49 HOH HOH . 
D 4 HOH A 50 750 50 HOH HOH . 
D 4 HOH A 51 751 51 HOH HOH . 
D 4 HOH A 52 752 52 HOH HOH . 
D 4 HOH A 53 753 53 HOH HOH . 
D 4 HOH A 54 754 54 HOH HOH . 
D 4 HOH A 55 755 55 HOH HOH . 
D 4 HOH A 56 756 56 HOH HOH . 
D 4 HOH A 57 757 57 HOH HOH . 
D 4 HOH A 58 758 58 HOH HOH . 
D 4 HOH A 59 759 59 HOH HOH . 
D 4 HOH A 60 760 60 HOH HOH . 
D 4 HOH A 61 761 61 HOH HOH . 
D 4 HOH A 62 762 62 HOH HOH . 
D 4 HOH A 63 763 63 HOH HOH . 
D 4 HOH A 64 764 64 HOH HOH . 
D 4 HOH A 65 765 65 HOH HOH . 
D 4 HOH A 66 766 66 HOH HOH . 
D 4 HOH A 67 767 67 HOH HOH . 
D 4 HOH A 68 768 68 HOH HOH . 
D 4 HOH A 69 769 69 HOH HOH . 
D 4 HOH A 70 770 70 HOH HOH . 
D 4 HOH A 71 771 71 HOH HOH . 
D 4 HOH A 72 772 72 HOH HOH . 
D 4 HOH A 73 773 73 HOH HOH . 
D 4 HOH A 74 774 74 HOH HOH . 
D 4 HOH A 75 775 75 HOH HOH . 
D 4 HOH A 76 776 76 HOH HOH . 
D 4 HOH A 77 777 77 HOH HOH . 
D 4 HOH A 78 778 78 HOH HOH . 
D 4 HOH A 79 779 79 HOH HOH . 
D 4 HOH A 80 780 80 HOH HOH . 
D 4 HOH A 81 781 81 HOH HOH . 
D 4 HOH A 82 782 82 HOH HOH . 
D 4 HOH A 83 783 83 HOH HOH . 
D 4 HOH A 84 784 84 HOH HOH . 
D 4 HOH A 85 785 85 HOH HOH . 
D 4 HOH A 86 786 86 HOH HOH . 
D 4 HOH A 87 787 87 HOH HOH . 
D 4 HOH A 88 788 88 HOH HOH . 
D 4 HOH A 89 789 89 HOH HOH . 
D 4 HOH A 90 790 90 HOH HOH . 
D 4 HOH A 91 791 91 HOH HOH . 
D 4 HOH A 92 792 92 HOH HOH . 
D 4 HOH A 93 793 93 HOH HOH . 
D 4 HOH A 94 794 94 HOH HOH . 
D 4 HOH A 95 795 95 HOH HOH . 
D 4 HOH A 96 796 96 HOH HOH . 
D 4 HOH A 97 797 97 HOH HOH . 
D 4 HOH A 98 798 98 HOH HOH . 
D 4 HOH A 99 799 99 HOH HOH . 
D 4 HOH A 100 800 100 HOH HOH . 
D 4 HOH A 101 801 101 HOH HOH . 
D 4 HOH A 102 802 102 HOH HOH . 
D 4 HOH A 103 803 103 HOH HOH . 
D 4 HOH A 104 804 104 HOH HOH . 
D 4 HOH A 105 805 105 HOH HOH . 
D 4 HOH A 106 806 106 HOH HOH . 
D 4 HOH A 107 807 107 HOH HOH . 
D 4 HOH A 108 808 108 HOH HOH . 
D 4 HOH A 109 809 109 HOH HOH . 
D 4 HOH A 110 810 110 HOH HOH . 
D 4 HOH A 111 811 111 HOH HOH . 
D 4 HOH A 112 812 112 HOH HOH . 
D 4 HOH A 113 813 113 HOH HOH . 
D 4 HOH A 114 814 114 HOH HOH . 
D 4 HOH A 115 815 115 HOH HOH . 
D 4 HOH A 116 816 116 HOH HOH . 
D 4 HOH A 117 817 117 HOH HOH . 
D 4 HOH A 118 818 118 HOH HOH . 
D 4 HOH A 119 819 119 HOH HOH . 
D 4 HOH A 120 820 120 HOH HOH . 
D 4 HOH A 121 821 121 HOH HOH . 
D 4 HOH A 122 822 122 HOH HOH . 
D 4 HOH A 123 823 123 HOH HOH . 
D 4 HOH A 124 824 124 HOH HOH . 
D 4 HOH A 125 825 125 HOH HOH . 
D 4 HOH A 126 826 126 HOH HOH . 
D 4 HOH A 127 827 127 HOH HOH . 
D 4 HOH A 128 828 128 HOH HOH . 
D 4 HOH A 129 829 129 HOH HOH . 
D 4 HOH A 130 830 130 HOH HOH . 
D 4 HOH A 131 831 131 HOH HOH . 
D 4 HOH A 132 832 132 HOH HOH . 
D 4 HOH A 133 833 133 HOH HOH . 
D 4 HOH A 134 834 134 HOH HOH . 
D 4 HOH A 135 835 135 HOH HOH . 
D 4 HOH A 136 836 136 HOH HOH . 
D 4 HOH A 137 837 137 HOH HOH . 
D 4 HOH A 138 838 138 HOH HOH . 
D 4 HOH A 139 839 139 HOH HOH . 
D 4 HOH A 140 840 140 HOH HOH . 
D 4 HOH A 141 841 141 HOH HOH . 
D 4 HOH A 142 842 142 HOH HOH . 
D 4 HOH A 143 843 143 HOH HOH . 
D 4 HOH A 144 844 144 HOH HOH . 
D 4 HOH A 145 845 145 HOH HOH . 
D 4 HOH A 146 846 146 HOH HOH . 
D 4 HOH A 147 847 147 HOH HOH . 
D 4 HOH A 148 848 148 HOH HOH . 
D 4 HOH A 149 849 149 HOH HOH . 
D 4 HOH A 150 850 150 HOH HOH . 
D 4 HOH A 151 851 151 HOH HOH . 
D 4 HOH A 152 852 152 HOH HOH . 
D 4 HOH A 153 853 153 HOH HOH . 
D 4 HOH A 154 854 154 HOH HOH . 
D 4 HOH A 155 855 155 HOH HOH . 
D 4 HOH A 156 856 156 HOH HOH . 
D 4 HOH A 157 857 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 MDS . . . C 3 38.422 38.311 37.172 1 59.3 ? S1 MDS 602 A 1 
HETATM 2 N N2 MDS . . . C 3 39.382 37.302 36.324 1 55.26 ? N2 MDS 602 A 1 
HETATM 3 C C5 MDS . . . C 3 39.091 36.08 35.874 1 48.23 ? C5 MDS 602 A 1 
HETATM 4 O O5 MDS . . . C 3 37.966 35.625 36.145 1 51.2 ? O5 MDS 602 A 1 
HETATM 5 C C6 MDS . . . C 3 40.094 35.38 35.128 1 42.45 ? C6 MDS 602 A 1 
HETATM 6 N N3 MDS . . . C 3 40.784 36.195 34.134 1 38.89 ? N3 MDS 602 A 1 
HETATM 7 C C7 MDS . . . C 3 41.077 34.858 36.169 1 37.49 ? C7 MDS 602 A 1 
HETATM 8 C C8 MDS . . . C 3 41.817 33.622 35.73 1 42.68 ? C8 MDS 602 A 1 
HETATM 9 S S2 MDS . . . C 3 40.919 32.073 36.057 1 42.54 ? S2 MDS 602 A 1 
HETATM 10 C C9 MDS . . . C 3 41.501 31.068 34.692 1 33.52 ? C9 MDS 602 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           571 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#