data_3VUH # _model_server_result.job_id Wqfq4SGzBgrlY3aNM_mNhA _model_server_result.datetime_utc '2024-11-24 21:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vuh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":405}' # _entry.id 3VUH # _exptl.entry_id 3VUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VUH _cell.length_a 169.929 _cell.length_b 169.929 _cell.length_c 87.315 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3VUH _atom_sites.fract_transf_matrix[1][1] 0.005885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 400 400 SO4 SO4 . D 3 SO4 A 1 401 401 SO4 SO4 . E 3 SO4 A 1 402 402 SO4 SO4 . F 3 SO4 A 1 403 403 SO4 SO4 . G 3 SO4 A 1 404 404 SO4 SO4 . H 4 GOL A 1 405 405 GOL GOL . I 5 HOH A 1 501 406 HOH HOH . I 5 HOH A 2 502 407 HOH HOH . I 5 HOH A 3 503 408 HOH HOH . I 5 HOH A 4 504 409 HOH HOH . I 5 HOH A 5 505 410 HOH HOH . I 5 HOH A 6 506 411 HOH HOH . I 5 HOH A 7 507 412 HOH HOH . I 5 HOH A 8 508 413 HOH HOH . I 5 HOH A 9 509 414 HOH HOH . I 5 HOH A 10 510 415 HOH HOH . I 5 HOH A 11 511 416 HOH HOH . I 5 HOH A 12 512 417 HOH HOH . I 5 HOH A 13 513 418 HOH HOH . I 5 HOH A 14 514 419 HOH HOH . I 5 HOH A 15 515 420 HOH HOH . I 5 HOH A 16 516 422 HOH HOH . I 5 HOH A 17 517 423 HOH HOH . I 5 HOH A 18 518 424 HOH HOH . I 5 HOH A 19 519 425 HOH HOH . I 5 HOH A 20 520 426 HOH HOH . I 5 HOH A 21 521 427 HOH HOH . I 5 HOH A 22 522 428 HOH HOH . I 5 HOH A 23 523 429 HOH HOH . I 5 HOH A 24 524 430 HOH HOH . I 5 HOH A 25 525 431 HOH HOH . I 5 HOH A 26 526 432 HOH HOH . I 5 HOH A 27 527 433 HOH HOH . I 5 HOH A 28 528 434 HOH HOH . I 5 HOH A 29 529 435 HOH HOH . I 5 HOH A 30 530 436 HOH HOH . I 5 HOH A 31 531 437 HOH HOH . I 5 HOH A 32 532 438 HOH HOH . I 5 HOH A 33 533 439 HOH HOH . I 5 HOH A 34 534 440 HOH HOH . I 5 HOH A 35 535 441 HOH HOH . I 5 HOH A 36 536 442 HOH HOH . I 5 HOH A 37 537 445 HOH HOH . I 5 HOH A 38 538 446 HOH HOH . I 5 HOH A 39 539 447 HOH HOH . I 5 HOH A 40 540 448 HOH HOH . I 5 HOH A 41 541 450 HOH HOH . I 5 HOH A 42 542 451 HOH HOH . I 5 HOH A 43 543 453 HOH HOH . I 5 HOH A 44 544 455 HOH HOH . I 5 HOH A 45 545 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -42.935 -31.541 -3.655 1 71.46 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . H 4 -41.866 -30.982 -2.899 1 77.48 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . H 4 -42.448 -32.871 -4.26 1 79.27 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . H 4 -41.007 -32.994 -4.32 1 68.51 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . H 4 -43.139 -33.111 -5.619 1 76.97 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . H 4 -44.471 -32.549 -5.47 1 76.28 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #