data_3VUV # _model_server_result.job_id s34EUKpEELHVqGD78RKuIg _model_server_result.datetime_utc '2025-02-28 22:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vuv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3VUV # _exptl.entry_id 3VUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 3VUV _cell.length_a 36.69 _cell.length_b 102.07 _cell.length_c 38.245 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 162 1_555 A SG CYS 213 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 47 A CYS 168 1_555 A SG CYS 202 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 56 A CYS 177 1_555 A SG CYS 91 A CYS 212 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 56 A CYS 177 1_555 A SG CYS 91 A CYS 212 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 237 A CYS 358 1_555 A SG CYS 325 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 251 A CYS 372 1_555 A SG CYS 272 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 A SG CYS 320 A CYS 441 1_555 A SG CYS 323 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc1 A NE2 HIS 128 A HIS 249 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A OE2 GLU 133 A GLU 254 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A OE1 GLU 133 A GLU 254 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A ND1 HIS 136 A HIS 257 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc5 A OD2 ASP 157 A ASP 278 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 A ND1 HIS 195 A HIS 316 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc7 A OE1 GLU 198 A GLU 319 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 A OH TYR 235 A TYR 356 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc9 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc10 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 C ZN ZN . A ZN 502 1_555 F O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc12 C ZN ZN . A ZN 502 1_555 F O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc13 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc14 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc15 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VUV _atom_sites.fract_transf_matrix[1][1] 0.027255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 2 ZN A 1 502 2 ZN ZN . D 2 ZN A 1 503 3 ZN ZN . E 2 ZN A 1 504 4 ZN ZN . F 3 HOH A 1 601 1 HOH HOH . F 3 HOH A 2 602 2 HOH HOH . F 3 HOH A 3 603 3 HOH HOH . F 3 HOH A 4 604 4 HOH HOH . F 3 HOH A 5 605 5 HOH HOH . F 3 HOH A 6 606 6 HOH HOH . F 3 HOH A 7 607 7 HOH HOH . F 3 HOH A 8 608 8 HOH HOH . F 3 HOH A 9 609 9 HOH HOH . F 3 HOH A 10 610 10 HOH HOH . F 3 HOH A 11 611 11 HOH HOH . F 3 HOH A 12 612 12 HOH HOH . F 3 HOH A 13 613 13 HOH HOH . F 3 HOH A 14 614 14 HOH HOH . F 3 HOH A 15 615 15 HOH HOH . F 3 HOH A 16 616 16 HOH HOH . F 3 HOH A 17 617 17 HOH HOH . F 3 HOH A 18 618 18 HOH HOH . F 3 HOH A 19 619 20 HOH HOH . F 3 HOH A 20 620 21 HOH HOH . F 3 HOH A 21 621 22 HOH HOH . F 3 HOH A 22 622 23 HOH HOH . F 3 HOH A 23 623 24 HOH HOH . F 3 HOH A 24 624 25 HOH HOH . F 3 HOH A 25 625 26 HOH HOH . F 3 HOH A 26 626 27 HOH HOH . F 3 HOH A 27 627 28 HOH HOH . F 3 HOH A 28 628 29 HOH HOH . F 3 HOH A 29 629 30 HOH HOH . F 3 HOH A 30 630 31 HOH HOH . F 3 HOH A 31 631 32 HOH HOH . F 3 HOH A 32 632 33 HOH HOH . F 3 HOH A 33 633 34 HOH HOH . F 3 HOH A 34 634 35 HOH HOH . F 3 HOH A 35 635 36 HOH HOH . F 3 HOH A 36 636 37 HOH HOH . F 3 HOH A 37 637 38 HOH HOH . F 3 HOH A 38 638 39 HOH HOH . F 3 HOH A 39 639 40 HOH HOH . F 3 HOH A 40 640 41 HOH HOH . F 3 HOH A 41 641 42 HOH HOH . F 3 HOH A 42 642 43 HOH HOH . F 3 HOH A 43 643 44 HOH HOH . F 3 HOH A 44 644 45 HOH HOH . F 3 HOH A 45 645 46 HOH HOH . F 3 HOH A 46 646 47 HOH HOH . F 3 HOH A 47 647 48 HOH HOH . F 3 HOH A 48 648 49 HOH HOH . F 3 HOH A 49 649 50 HOH HOH . F 3 HOH A 50 650 51 HOH HOH . F 3 HOH A 51 651 52 HOH HOH . F 3 HOH A 52 652 53 HOH HOH . F 3 HOH A 53 653 54 HOH HOH . F 3 HOH A 54 654 55 HOH HOH . F 3 HOH A 55 655 56 HOH HOH . F 3 HOH A 56 656 57 HOH HOH . F 3 HOH A 57 657 58 HOH HOH . F 3 HOH A 58 658 59 HOH HOH . F 3 HOH A 59 659 60 HOH HOH . F 3 HOH A 60 660 61 HOH HOH . F 3 HOH A 61 661 62 HOH HOH . F 3 HOH A 62 662 63 HOH HOH . F 3 HOH A 63 663 64 HOH HOH . F 3 HOH A 64 664 65 HOH HOH . F 3 HOH A 65 665 66 HOH HOH . F 3 HOH A 66 666 67 HOH HOH . F 3 HOH A 67 667 68 HOH HOH . F 3 HOH A 68 668 69 HOH HOH . F 3 HOH A 69 669 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.086 _atom_site.Cartn_y -1.512 _atom_site.Cartn_z -12.597 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #