data_3VV5 # _model_server_result.job_id FQpoE6g3VPl5hRfnBb9MTw _model_server_result.datetime_utc '2024-11-29 23:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3VV5 # _exptl.entry_id 3VV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-THIALYSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VV5 _cell.length_a 68.573 _cell.length_b 68.603 _cell.length_c 98.527 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 121 A CYS 97 1_555 A SG CYS 259 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 121 B CYS 97 1_555 B SG CYS 259 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C5 H12 N2 O2 S' _chem_comp.formula_weight 164.226 _chem_comp.id SLZ _chem_comp.mon_nstd_flag n _chem_comp.name L-THIALYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SLZ sing 290 n n N H SLZ sing 291 n n N H2 SLZ sing 292 n n CA CB SLZ sing 293 n n CA C SLZ sing 294 n n CA HA SLZ sing 295 n n CB SG SLZ sing 296 n n CB HB2 SLZ sing 297 n n CB HB3 SLZ sing 298 n n SG CD SLZ sing 299 n n CD CE SLZ sing 300 n n CD HD2 SLZ sing 301 n n CD HD3 SLZ sing 302 n n CE NZ SLZ sing 303 n n CE HE2 SLZ sing 304 n n CE HE3 SLZ sing 305 n n NZ HZ1 SLZ sing 306 n n NZ HZ2 SLZ sing 307 n n C O SLZ doub 308 n n C OXT SLZ sing 309 n n OXT HXT SLZ sing 310 n n # _atom_sites.entry_id 3VV5 _atom_sites.fract_transf_matrix[1][1] 0.014583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SLZ A 1 300 300 SLZ AEC . D 2 SLZ B 1 301 300 SLZ AEC . E 3 SO4 B 1 302 1 SO4 SO4 . F 4 HOH A 1 401 2 HOH HOH . F 4 HOH A 2 402 3 HOH HOH . F 4 HOH A 3 403 9 HOH HOH . F 4 HOH A 4 404 11 HOH HOH . F 4 HOH A 5 405 12 HOH HOH . F 4 HOH A 6 406 13 HOH HOH . F 4 HOH A 7 407 14 HOH HOH . F 4 HOH A 8 408 16 HOH HOH . F 4 HOH A 9 409 17 HOH HOH . F 4 HOH A 10 410 21 HOH HOH . F 4 HOH A 11 411 24 HOH HOH . F 4 HOH A 12 412 25 HOH HOH . F 4 HOH A 13 413 27 HOH HOH . F 4 HOH A 14 414 30 HOH HOH . F 4 HOH A 15 415 31 HOH HOH . F 4 HOH A 16 416 32 HOH HOH . F 4 HOH A 17 417 35 HOH HOH . F 4 HOH A 18 418 36 HOH HOH . F 4 HOH A 19 419 37 HOH HOH . F 4 HOH A 20 420 42 HOH HOH . F 4 HOH A 21 421 43 HOH HOH . F 4 HOH A 22 422 44 HOH HOH . F 4 HOH A 23 423 45 HOH HOH . F 4 HOH A 24 424 47 HOH HOH . F 4 HOH A 25 425 49 HOH HOH . F 4 HOH A 26 426 50 HOH HOH . F 4 HOH A 27 427 52 HOH HOH . F 4 HOH A 28 428 54 HOH HOH . F 4 HOH A 29 429 56 HOH HOH . F 4 HOH A 30 430 59 HOH HOH . F 4 HOH A 31 431 61 HOH HOH . F 4 HOH A 32 432 62 HOH HOH . F 4 HOH A 33 433 63 HOH HOH . F 4 HOH A 34 434 64 HOH HOH . F 4 HOH A 35 435 69 HOH HOH . F 4 HOH A 36 436 70 HOH HOH . F 4 HOH A 37 437 71 HOH HOH . F 4 HOH A 38 438 72 HOH HOH . F 4 HOH A 39 439 75 HOH HOH . F 4 HOH A 40 440 76 HOH HOH . F 4 HOH A 41 441 77 HOH HOH . F 4 HOH A 42 442 81 HOH HOH . F 4 HOH A 43 443 83 HOH HOH . F 4 HOH A 44 444 84 HOH HOH . F 4 HOH A 45 445 85 HOH HOH . F 4 HOH A 46 446 86 HOH HOH . F 4 HOH A 47 447 88 HOH HOH . F 4 HOH A 48 448 90 HOH HOH . F 4 HOH A 49 449 91 HOH HOH . F 4 HOH A 50 450 93 HOH HOH . F 4 HOH A 51 451 94 HOH HOH . F 4 HOH A 52 452 96 HOH HOH . F 4 HOH A 53 453 97 HOH HOH . F 4 HOH A 54 454 99 HOH HOH . F 4 HOH A 55 455 101 HOH HOH . F 4 HOH A 56 456 102 HOH HOH . F 4 HOH A 57 457 104 HOH HOH . F 4 HOH A 58 458 105 HOH HOH . F 4 HOH A 59 459 114 HOH HOH . F 4 HOH A 60 460 116 HOH HOH . F 4 HOH A 61 461 117 HOH HOH . F 4 HOH A 62 462 120 HOH HOH . F 4 HOH A 63 463 126 HOH HOH . F 4 HOH A 64 464 127 HOH HOH . F 4 HOH A 65 465 128 HOH HOH . F 4 HOH A 66 466 129 HOH HOH . F 4 HOH A 67 467 132 HOH HOH . F 4 HOH A 68 468 135 HOH HOH . F 4 HOH A 69 469 136 HOH HOH . F 4 HOH A 70 470 137 HOH HOH . F 4 HOH A 71 471 139 HOH HOH . F 4 HOH A 72 472 143 HOH HOH . F 4 HOH A 73 473 144 HOH HOH . F 4 HOH A 74 474 146 HOH HOH . F 4 HOH A 75 475 147 HOH HOH . F 4 HOH A 76 476 148 HOH HOH . F 4 HOH A 77 477 149 HOH HOH . F 4 HOH A 78 478 150 HOH HOH . F 4 HOH A 79 479 151 HOH HOH . F 4 HOH A 80 480 153 HOH HOH . F 4 HOH A 81 481 154 HOH HOH . F 4 HOH A 82 482 156 HOH HOH . F 4 HOH A 83 483 160 HOH HOH . F 4 HOH A 84 484 162 HOH HOH . F 4 HOH A 85 485 163 HOH HOH . F 4 HOH A 86 486 164 HOH HOH . F 4 HOH A 87 487 165 HOH HOH . F 4 HOH A 88 488 170 HOH HOH . F 4 HOH A 89 489 173 HOH HOH . F 4 HOH A 90 490 175 HOH HOH . F 4 HOH A 91 491 181 HOH HOH . F 4 HOH A 92 492 183 HOH HOH . F 4 HOH A 93 493 188 HOH HOH . F 4 HOH A 94 494 190 HOH HOH . F 4 HOH A 95 495 191 HOH HOH . F 4 HOH A 96 496 193 HOH HOH . F 4 HOH A 97 497 194 HOH HOH . F 4 HOH A 98 498 197 HOH HOH . F 4 HOH A 99 499 200 HOH HOH . F 4 HOH A 100 500 202 HOH HOH . F 4 HOH A 101 501 203 HOH HOH . F 4 HOH A 102 502 210 HOH HOH . F 4 HOH A 103 503 211 HOH HOH . F 4 HOH A 104 504 214 HOH HOH . F 4 HOH A 105 505 222 HOH HOH . F 4 HOH A 106 506 224 HOH HOH . F 4 HOH A 107 507 226 HOH HOH . F 4 HOH A 108 508 227 HOH HOH . F 4 HOH A 109 509 229 HOH HOH . F 4 HOH A 110 510 231 HOH HOH . F 4 HOH A 111 511 233 HOH HOH . F 4 HOH A 112 512 234 HOH HOH . F 4 HOH A 113 513 236 HOH HOH . F 4 HOH A 114 514 239 HOH HOH . F 4 HOH A 115 515 240 HOH HOH . F 4 HOH A 116 516 244 HOH HOH . F 4 HOH A 117 517 248 HOH HOH . F 4 HOH A 118 518 252 HOH HOH . F 4 HOH A 119 519 254 HOH HOH . F 4 HOH A 120 520 255 HOH HOH . F 4 HOH A 121 521 256 HOH HOH . F 4 HOH A 122 522 257 HOH HOH . F 4 HOH A 123 523 260 HOH HOH . F 4 HOH A 124 524 264 HOH HOH . F 4 HOH A 125 525 265 HOH HOH . F 4 HOH A 126 526 266 HOH HOH . F 4 HOH A 127 527 268 HOH HOH . F 4 HOH A 128 528 273 HOH HOH . G 4 HOH B 1 401 1 HOH HOH . G 4 HOH B 2 402 4 HOH HOH . G 4 HOH B 3 403 5 HOH HOH . G 4 HOH B 4 404 6 HOH HOH . G 4 HOH B 5 405 7 HOH HOH . G 4 HOH B 6 406 8 HOH HOH . G 4 HOH B 7 407 10 HOH HOH . G 4 HOH B 8 408 15 HOH HOH . G 4 HOH B 9 409 18 HOH HOH . G 4 HOH B 10 410 19 HOH HOH . G 4 HOH B 11 411 20 HOH HOH . G 4 HOH B 12 412 22 HOH HOH . G 4 HOH B 13 413 23 HOH HOH . G 4 HOH B 14 414 26 HOH HOH . G 4 HOH B 15 415 28 HOH HOH . G 4 HOH B 16 416 29 HOH HOH . G 4 HOH B 17 417 33 HOH HOH . G 4 HOH B 18 418 34 HOH HOH . G 4 HOH B 19 419 38 HOH HOH . G 4 HOH B 20 420 39 HOH HOH . G 4 HOH B 21 421 40 HOH HOH . G 4 HOH B 22 422 41 HOH HOH . G 4 HOH B 23 423 46 HOH HOH . G 4 HOH B 24 424 48 HOH HOH . G 4 HOH B 25 425 51 HOH HOH . G 4 HOH B 26 426 53 HOH HOH . G 4 HOH B 27 427 55 HOH HOH . G 4 HOH B 28 428 57 HOH HOH . G 4 HOH B 29 429 58 HOH HOH . G 4 HOH B 30 430 60 HOH HOH . G 4 HOH B 31 431 65 HOH HOH . G 4 HOH B 32 432 66 HOH HOH . G 4 HOH B 33 433 67 HOH HOH . G 4 HOH B 34 434 68 HOH HOH . G 4 HOH B 35 435 73 HOH HOH . G 4 HOH B 36 436 74 HOH HOH . G 4 HOH B 37 437 78 HOH HOH . G 4 HOH B 38 438 79 HOH HOH . G 4 HOH B 39 439 80 HOH HOH . G 4 HOH B 40 440 82 HOH HOH . G 4 HOH B 41 441 87 HOH HOH . G 4 HOH B 42 442 89 HOH HOH . G 4 HOH B 43 443 92 HOH HOH . G 4 HOH B 44 444 95 HOH HOH . G 4 HOH B 45 445 98 HOH HOH . G 4 HOH B 46 446 100 HOH HOH . G 4 HOH B 47 447 103 HOH HOH . G 4 HOH B 48 448 106 HOH HOH . G 4 HOH B 49 449 107 HOH HOH . G 4 HOH B 50 450 108 HOH HOH . G 4 HOH B 51 451 109 HOH HOH . G 4 HOH B 52 452 110 HOH HOH . G 4 HOH B 53 453 111 HOH HOH . G 4 HOH B 54 454 112 HOH HOH . G 4 HOH B 55 455 113 HOH HOH . G 4 HOH B 56 456 115 HOH HOH . G 4 HOH B 57 457 118 HOH HOH . G 4 HOH B 58 458 119 HOH HOH . G 4 HOH B 59 459 121 HOH HOH . G 4 HOH B 60 460 123 HOH HOH . G 4 HOH B 61 461 125 HOH HOH . G 4 HOH B 62 462 130 HOH HOH . G 4 HOH B 63 463 131 HOH HOH . G 4 HOH B 64 464 133 HOH HOH . G 4 HOH B 65 465 134 HOH HOH . G 4 HOH B 66 466 138 HOH HOH . G 4 HOH B 67 467 141 HOH HOH . G 4 HOH B 68 468 142 HOH HOH . G 4 HOH B 69 469 145 HOH HOH . G 4 HOH B 70 470 152 HOH HOH . G 4 HOH B 71 471 155 HOH HOH . G 4 HOH B 72 472 157 HOH HOH . G 4 HOH B 73 473 158 HOH HOH . G 4 HOH B 74 474 159 HOH HOH . G 4 HOH B 75 475 161 HOH HOH . G 4 HOH B 76 476 166 HOH HOH . G 4 HOH B 77 477 167 HOH HOH . G 4 HOH B 78 478 168 HOH HOH . G 4 HOH B 79 479 169 HOH HOH . G 4 HOH B 80 480 171 HOH HOH . G 4 HOH B 81 481 172 HOH HOH . G 4 HOH B 82 482 174 HOH HOH . G 4 HOH B 83 483 176 HOH HOH . G 4 HOH B 84 484 177 HOH HOH . G 4 HOH B 85 485 178 HOH HOH . G 4 HOH B 86 486 179 HOH HOH . G 4 HOH B 87 487 180 HOH HOH . G 4 HOH B 88 488 182 HOH HOH . G 4 HOH B 89 489 185 HOH HOH . G 4 HOH B 90 490 186 HOH HOH . G 4 HOH B 91 491 187 HOH HOH . G 4 HOH B 92 492 189 HOH HOH . G 4 HOH B 93 493 192 HOH HOH . G 4 HOH B 94 494 196 HOH HOH . G 4 HOH B 95 495 198 HOH HOH . G 4 HOH B 96 496 199 HOH HOH . G 4 HOH B 97 497 201 HOH HOH . G 4 HOH B 98 498 204 HOH HOH . G 4 HOH B 99 499 205 HOH HOH . G 4 HOH B 100 500 206 HOH HOH . G 4 HOH B 101 501 207 HOH HOH . G 4 HOH B 102 502 208 HOH HOH . G 4 HOH B 103 503 209 HOH HOH . G 4 HOH B 104 504 212 HOH HOH . G 4 HOH B 105 505 213 HOH HOH . G 4 HOH B 106 506 215 HOH HOH . G 4 HOH B 107 507 216 HOH HOH . G 4 HOH B 108 508 217 HOH HOH . G 4 HOH B 109 509 218 HOH HOH . G 4 HOH B 110 510 219 HOH HOH . G 4 HOH B 111 511 220 HOH HOH . G 4 HOH B 112 512 221 HOH HOH . G 4 HOH B 113 513 223 HOH HOH . G 4 HOH B 114 514 225 HOH HOH . G 4 HOH B 115 515 228 HOH HOH . G 4 HOH B 116 516 230 HOH HOH . G 4 HOH B 117 517 232 HOH HOH . G 4 HOH B 118 518 235 HOH HOH . G 4 HOH B 119 519 237 HOH HOH . G 4 HOH B 120 520 238 HOH HOH . G 4 HOH B 121 521 242 HOH HOH . G 4 HOH B 122 522 243 HOH HOH . G 4 HOH B 123 523 245 HOH HOH . G 4 HOH B 124 524 246 HOH HOH . G 4 HOH B 125 525 247 HOH HOH . G 4 HOH B 126 526 249 HOH HOH . G 4 HOH B 127 527 250 HOH HOH . G 4 HOH B 128 528 251 HOH HOH . G 4 HOH B 129 529 253 HOH HOH . G 4 HOH B 130 530 258 HOH HOH . G 4 HOH B 131 531 259 HOH HOH . G 4 HOH B 132 532 261 HOH HOH . G 4 HOH B 133 533 262 HOH HOH . G 4 HOH B 134 534 269 HOH HOH . G 4 HOH B 135 535 270 HOH HOH . G 4 HOH B 136 536 271 HOH HOH . G 4 HOH B 137 537 272 HOH HOH . G 4 HOH B 138 538 274 HOH HOH . G 4 HOH B 139 539 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SLZ . . . D 2 -6.259 30.171 -10.847 1 15.42 ? N SLZ 301 B 1 HETATM 2 C CA SLZ . . . D 2 -5.387 30.859 -9.856 1 17.14 ? CA SLZ 301 B 1 HETATM 3 C CB SLZ . . . D 2 -4.652 29.792 -9.006 1 17.26 ? CB SLZ 301 B 1 HETATM 4 S SG SLZ . . . D 2 -3.606 28.797 -10.108 1 26.58 ? SG SLZ 301 B 1 HETATM 5 C CD SLZ . . . D 2 -2.67 27.548 -9.131 1 20.63 ? CD SLZ 301 B 1 HETATM 6 C CE SLZ . . . D 2 -2.442 26.312 -10.023 1 26.25 ? CE SLZ 301 B 1 HETATM 7 N NZ SLZ . . . D 2 -1.396 25.293 -9.676 1 23.85 ? NZ SLZ 301 B 1 HETATM 8 C C SLZ . . . D 2 -4.396 31.796 -10.603 1 15.98 ? C SLZ 301 B 1 HETATM 9 O O SLZ . . . D 2 -4.549 31.903 -11.844 1 15.87 ? O SLZ 301 B 1 HETATM 10 O OXT SLZ . . . D 2 -3.508 32.389 -9.947 1 15.4 ? OXT SLZ 301 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #