data_3VV7
#
_model_server_result.job_id            tGrVleHd9BLceLuMXJ0rzQ 
_model_server_result.datetime_utc      '2024-11-23 17:08:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    3VV7 
#
_exptl.entry_id    3VV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VV7 
_cell.length_a            103.681 
_cell.length_b            103.681 
_cell.length_c            169.006 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 178 A CYS 155 1_555 A SG CYS 382 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
disulf ? disulf2 A SG CYS 240 A CYS 217 1_555 A SG CYS 405 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 A SG CYS 292 A CYS 269 1_555 A SG CYS 342 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     3VV7 
_atom_sites.fract_transf_matrix[1][1]    0.009645 
_atom_sites.fract_transf_matrix[1][2]    0.005569 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011137 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 501 501 IOD IOD . 
C 2 IOD A 1 502 502 IOD IOD . 
D 2 IOD A 1 503 503 IOD IOD . 
E 2 IOD A 1 504 504 IOD IOD . 
F 2 IOD A 1 505 505 IOD IOD . 
G 2 IOD A 1 506 506 IOD IOD . 
H 3 GOL A 1 507 601 GOL GOL . 
I 3 GOL A 1 508 602 GOL GOL . 
J 4 0B1 A 1 509 701 0B1 0B1 . 
K 5 HOH A 1 1001 1001 HOH HOH . 
K 5 HOH A 2 1002 1003 HOH HOH . 
K 5 HOH A 3 1003 1004 HOH HOH . 
K 5 HOH A 4 1004 1005 HOH HOH . 
K 5 HOH A 5 1005 1006 HOH HOH . 
K 5 HOH A 6 1006 1007 HOH HOH . 
K 5 HOH A 7 1007 1008 HOH HOH . 
K 5 HOH A 8 1008 1009 HOH HOH . 
K 5 HOH A 9 1009 1010 HOH HOH . 
K 5 HOH A 10 1010 1011 HOH HOH . 
K 5 HOH A 11 1011 1012 HOH HOH . 
K 5 HOH A 12 1012 1013 HOH HOH . 
K 5 HOH A 13 1013 1014 HOH HOH . 
K 5 HOH A 14 1014 1015 HOH HOH . 
K 5 HOH A 15 1015 1016 HOH HOH . 
K 5 HOH A 16 1016 1017 HOH HOH . 
K 5 HOH A 17 1017 1018 HOH HOH . 
K 5 HOH A 18 1018 1019 HOH HOH . 
K 5 HOH A 19 1019 1020 HOH HOH . 
K 5 HOH A 20 1020 1021 HOH HOH . 
K 5 HOH A 21 1021 1022 HOH HOH . 
K 5 HOH A 22 1022 1023 HOH HOH . 
K 5 HOH A 23 1023 1024 HOH HOH . 
K 5 HOH A 24 1024 1025 HOH HOH . 
K 5 HOH A 25 1025 1026 HOH HOH . 
K 5 HOH A 26 1026 1027 HOH HOH . 
K 5 HOH A 27 1027 1028 HOH HOH . 
K 5 HOH A 28 1028 1029 HOH HOH . 
K 5 HOH A 29 1029 1030 HOH HOH . 
K 5 HOH A 30 1030 1031 HOH HOH . 
K 5 HOH A 31 1031 1032 HOH HOH . 
K 5 HOH A 32 1032 1033 HOH HOH . 
K 5 HOH A 33 1033 1034 HOH HOH . 
K 5 HOH A 34 1034 1035 HOH HOH . 
K 5 HOH A 35 1035 1036 HOH HOH . 
K 5 HOH A 36 1036 1037 HOH HOH . 
K 5 HOH A 37 1037 1038 HOH HOH . 
K 5 HOH A 38 1038 1039 HOH HOH . 
K 5 HOH A 39 1039 1040 HOH HOH . 
K 5 HOH A 40 1040 1041 HOH HOH . 
K 5 HOH A 41 1041 1042 HOH HOH . 
K 5 HOH A 42 1042 1043 HOH HOH . 
K 5 HOH A 43 1043 1044 HOH HOH . 
K 5 HOH A 44 1044 1045 HOH HOH . 
K 5 HOH A 45 1045 1046 HOH HOH . 
K 5 HOH A 46 1046 1047 HOH HOH . 
K 5 HOH A 47 1047 1048 HOH HOH . 
K 5 HOH A 48 1048 1049 HOH HOH . 
K 5 HOH A 49 1049 1050 HOH HOH . 
K 5 HOH A 50 1050 1051 HOH HOH . 
K 5 HOH A 51 1051 1052 HOH HOH . 
K 5 HOH A 52 1052 1053 HOH HOH . 
K 5 HOH A 53 1053 1054 HOH HOH . 
K 5 HOH A 54 1054 1055 HOH HOH . 
K 5 HOH A 55 1055 1056 HOH HOH . 
K 5 HOH A 56 1056 1058 HOH HOH . 
K 5 HOH A 57 1057 1059 HOH HOH . 
K 5 HOH A 58 1058 1060 HOH HOH . 
K 5 HOH A 59 1059 1062 HOH HOH . 
K 5 HOH A 60 1060 1063 HOH HOH . 
K 5 HOH A 61 1061 1064 HOH HOH . 
K 5 HOH A 62 1062 1065 HOH HOH . 
K 5 HOH A 63 1063 1066 HOH HOH . 
K 5 HOH A 64 1064 1067 HOH HOH . 
K 5 HOH A 65 1065 1068 HOH HOH . 
K 5 HOH A 66 1066 1069 HOH HOH . 
K 5 HOH A 67 1067 1070 HOH HOH . 
K 5 HOH A 68 1068 1071 HOH HOH . 
K 5 HOH A 69 1069 1072 HOH HOH . 
K 5 HOH A 70 1070 1073 HOH HOH . 
K 5 HOH A 71 1071 1074 HOH HOH . 
K 5 HOH A 72 1072 1075 HOH HOH . 
K 5 HOH A 73 1073 1076 HOH HOH . 
K 5 HOH A 74 1074 1077 HOH HOH . 
K 5 HOH A 75 1075 1078 HOH HOH . 
K 5 HOH A 76 1076 1079 HOH HOH . 
K 5 HOH A 77 1077 1080 HOH HOH . 
K 5 HOH A 78 1078 1081 HOH HOH . 
K 5 HOH A 79 1079 1082 HOH HOH . 
K 5 HOH A 80 1080 1083 HOH HOH . 
K 5 HOH A 81 1081 1084 HOH HOH . 
K 5 HOH A 82 1082 1085 HOH HOH . 
K 5 HOH A 83 1083 1086 HOH HOH . 
K 5 HOH A 84 1084 1087 HOH HOH . 
K 5 HOH A 85 1085 1088 HOH HOH . 
K 5 HOH A 86 1086 1089 HOH HOH . 
K 5 HOH A 87 1087 1090 HOH HOH . 
K 5 HOH A 88 1088 1091 HOH HOH . 
K 5 HOH A 89 1089 1092 HOH HOH . 
K 5 HOH A 90 1090 1093 HOH HOH . 
K 5 HOH A 91 1091 1094 HOH HOH . 
K 5 HOH A 92 1092 1095 HOH HOH . 
K 5 HOH A 93 1093 1096 HOH HOH . 
K 5 HOH A 94 1094 1097 HOH HOH . 
K 5 HOH A 95 1095 1098 HOH HOH . 
K 5 HOH A 96 1096 1099 HOH HOH . 
K 5 HOH A 97 1097 1100 HOH HOH . 
K 5 HOH A 98 1098 1101 HOH HOH . 
K 5 HOH A 99 1099 1102 HOH HOH . 
K 5 HOH A 100 1100 1103 HOH HOH . 
K 5 HOH A 101 1101 1104 HOH HOH . 
K 5 HOH A 102 1102 1105 HOH HOH . 
K 5 HOH A 103 1103 1106 HOH HOH . 
K 5 HOH A 104 1104 1107 HOH HOH . 
K 5 HOH A 105 1105 1108 HOH HOH . 
K 5 HOH A 106 1106 1109 HOH HOH . 
K 5 HOH A 107 1107 1110 HOH HOH . 
K 5 HOH A 108 1108 1111 HOH HOH . 
K 5 HOH A 109 1109 1112 HOH HOH . 
K 5 HOH A 110 1110 1113 HOH HOH . 
K 5 HOH A 111 1111 1114 HOH HOH . 
K 5 HOH A 112 1112 1115 HOH HOH . 
K 5 HOH A 113 1113 1116 HOH HOH . 
K 5 HOH A 114 1114 1117 HOH HOH . 
K 5 HOH A 115 1115 1118 HOH HOH . 
K 5 HOH A 116 1116 1119 HOH HOH . 
K 5 HOH A 117 1117 1120 HOH HOH . 
K 5 HOH A 118 1118 1121 HOH HOH . 
K 5 HOH A 119 1119 1122 HOH HOH . 
K 5 HOH A 120 1120 1123 HOH HOH . 
K 5 HOH A 121 1121 1124 HOH HOH . 
K 5 HOH A 122 1122 1125 HOH HOH . 
K 5 HOH A 123 1123 1126 HOH HOH . 
K 5 HOH A 124 1124 1127 HOH HOH . 
K 5 HOH A 125 1125 1128 HOH HOH . 
K 5 HOH A 126 1126 1129 HOH HOH . 
K 5 HOH A 127 1127 1130 HOH HOH . 
K 5 HOH A 128 1128 1131 HOH HOH . 
K 5 HOH A 129 1129 1132 HOH HOH . 
K 5 HOH A 130 1130 1133 HOH HOH . 
K 5 HOH A 131 1131 1134 HOH HOH . 
K 5 HOH A 132 1132 1135 HOH HOH . 
K 5 HOH A 133 1133 1136 HOH HOH . 
K 5 HOH A 134 1134 1137 HOH HOH . 
K 5 HOH A 135 1135 1138 HOH HOH . 
K 5 HOH A 136 1136 1139 HOH HOH . 
K 5 HOH A 137 1137 1140 HOH HOH . 
K 5 HOH A 138 1138 1141 HOH HOH . 
K 5 HOH A 139 1139 1142 HOH HOH . 
K 5 HOH A 140 1140 1143 HOH HOH . 
K 5 HOH A 141 1141 1144 HOH HOH . 
K 5 HOH A 142 1142 1145 HOH HOH . 
K 5 HOH A 143 1143 1146 HOH HOH . 
K 5 HOH A 144 1144 1147 HOH HOH . 
K 5 HOH A 145 1145 1148 HOH HOH . 
K 5 HOH A 146 1146 1149 HOH HOH . 
K 5 HOH A 147 1147 1150 HOH HOH . 
K 5 HOH A 148 1148 1151 HOH HOH . 
K 5 HOH A 149 1149 1152 HOH HOH . 
K 5 HOH A 150 1150 1153 HOH HOH . 
K 5 HOH A 151 1151 1154 HOH HOH . 
K 5 HOH A 152 1152 1155 HOH HOH . 
K 5 HOH A 153 1153 1156 HOH HOH . 
K 5 HOH A 154 1154 1157 HOH HOH . 
K 5 HOH A 155 1155 1158 HOH HOH . 
K 5 HOH A 156 1156 1159 HOH HOH . 
K 5 HOH A 157 1157 1161 HOH HOH . 
K 5 HOH A 158 1158 1162 HOH HOH . 
K 5 HOH A 159 1159 1163 HOH HOH . 
K 5 HOH A 160 1160 1164 HOH HOH . 
K 5 HOH A 161 1161 1165 HOH HOH . 
K 5 HOH A 162 1162 1166 HOH HOH . 
K 5 HOH A 163 1163 1167 HOH HOH . 
K 5 HOH A 164 1164 1168 HOH HOH . 
K 5 HOH A 165 1165 1169 HOH HOH . 
K 5 HOH A 166 1166 1170 HOH HOH . 
K 5 HOH A 167 1167 1171 HOH HOH . 
K 5 HOH A 168 1168 1172 HOH HOH . 
K 5 HOH A 169 1169 1173 HOH HOH . 
K 5 HOH A 170 1170 1174 HOH HOH . 
K 5 HOH A 171 1171 1175 HOH HOH . 
K 5 HOH A 172 1172 1176 HOH HOH . 
K 5 HOH A 173 1173 1177 HOH HOH . 
K 5 HOH A 174 1174 1178 HOH HOH . 
K 5 HOH A 175 1175 1179 HOH HOH . 
K 5 HOH A 176 1176 1180 HOH HOH . 
K 5 HOH A 177 1177 1181 HOH HOH . 
K 5 HOH A 178 1178 1182 HOH HOH . 
K 5 HOH A 179 1179 1183 HOH HOH . 
K 5 HOH A 180 1180 1184 HOH HOH . 
K 5 HOH A 181 1181 1185 HOH HOH . 
K 5 HOH A 182 1182 1186 HOH HOH . 
K 5 HOH A 183 1183 1187 HOH HOH . 
K 5 HOH A 184 1184 1188 HOH HOH . 
K 5 HOH A 185 1185 1189 HOH HOH . 
K 5 HOH A 186 1186 1190 HOH HOH . 
K 5 HOH A 187 1187 1191 HOH HOH . 
K 5 HOH A 188 1188 1192 HOH HOH . 
K 5 HOH A 189 1189 1193 HOH HOH . 
K 5 HOH A 190 1190 1194 HOH HOH . 
K 5 HOH A 191 1191 1195 HOH HOH . 
K 5 HOH A 192 1192 1197 HOH HOH . 
K 5 HOH A 193 1193 1198 HOH HOH . 
K 5 HOH A 194 1194 1199 HOH HOH . 
K 5 HOH A 195 1195 1200 HOH HOH . 
K 5 HOH A 196 1196 1201 HOH HOH . 
K 5 HOH A 197 1197 1202 HOH HOH . 
K 5 HOH A 198 1198 1203 HOH HOH . 
K 5 HOH A 199 1199 1204 HOH HOH . 
K 5 HOH A 200 1200 1205 HOH HOH . 
K 5 HOH A 201 1201 1206 HOH HOH . 
K 5 HOH A 202 1202 1207 HOH HOH . 
K 5 HOH A 203 1203 1208 HOH HOH . 
K 5 HOH A 204 1204 1209 HOH HOH . 
K 5 HOH A 205 1205 1210 HOH HOH . 
K 5 HOH A 206 1206 1211 HOH HOH . 
K 5 HOH A 207 1207 1212 HOH HOH . 
K 5 HOH A 208 1208 1214 HOH HOH . 
K 5 HOH A 209 1209 1215 HOH HOH . 
K 5 HOH A 210 1210 1216 HOH HOH . 
K 5 HOH A 211 1211 1217 HOH HOH . 
K 5 HOH A 212 1212 1218 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -36.338 -22.906 -7.272 1 45.21 ? C1 GOL 507 A 1 
HETATM 2 O O1 GOL . . . H 3 -37.674 -22.524 -7.37 1 42.55 ? O1 GOL 507 A 1 
HETATM 3 C C2 GOL . . . H 3 -36.318 -24.029 -6.276 1 44.09 ? C2 GOL 507 A 1 
HETATM 4 O O2 GOL . . . H 3 -37.097 -25.044 -6.804 1 45.86 ? O2 GOL 507 A 1 
HETATM 5 C C3 GOL . . . H 3 -34.971 -24.643 -5.956 1 42.65 ? C3 GOL 507 A 1 
HETATM 6 O O3 GOL . . . H 3 -33.915 -23.885 -6.278 1 38.53 ? O3 GOL 507 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#