data_3VV8
#
_model_server_result.job_id            zIPkx7jHaO5AJIJgW0OsoA 
_model_server_result.datetime_utc      '2024-11-22 02:33:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    3VV8 
#
_exptl.entry_id    3VV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              331.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2-amino-3-methyl-6-[(1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl]pyrimidin-4(3H)-one" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VV8 
_cell.length_a            101.92 
_cell.length_b            101.92 
_cell.length_c            169.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 178 A CYS 155 1_555 A SG CYS 382 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 240 A CYS 217 1_555 A SG CYS 405 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 292 A CYS 269 1_555 A SG CYS 342 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C21 H21 N3 O' 
_chem_comp.formula_weight    331.411 
_chem_comp.id                B02 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2-amino-3-methyl-6-[(1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl]pyrimidin-4(3H)-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C6 B02 sing 70 n n 
C21 C7 B02 sing 71 n n 
O C1 B02 doub 72 n n 
C2 C1 B02 sing 73 n n 
C2 C3 B02 doub 74 n n 
C6 C7 B02 sing 75 n n 
C6 C3 B02 sing 76 n n 
C1 N2 B02 sing 77 n n 
C7 C8 B02 sing 78 n n 
C13 C8 B02 doub 79 n y 
C13 C12 B02 sing 80 n y 
C3 N1 B02 sing 81 n n 
C8 C9 B02 sing 82 n y 
C12 C11 B02 doub 83 n y 
N2 C5 B02 sing 84 n n 
N2 C4 B02 sing 85 n n 
N1 C4 B02 doub 86 n n 
C9 C10 B02 doub 87 n y 
C4 N3 B02 sing 88 n n 
C11 C10 B02 sing 89 n y 
C11 C14 B02 sing 90 n n 
C19 C14 B02 doub 91 n y 
C19 C18 B02 sing 92 n y 
C14 C15 B02 sing 93 n y 
C18 C17 B02 doub 94 n y 
C15 C16 B02 doub 95 n y 
C17 C16 B02 sing 96 n y 
C16 C20 B02 sing 97 n n 
C5 H1 B02 sing 98 n n 
C5 H2 B02 sing 99 n n 
C5 H3 B02 sing 100 n n 
N3 H4 B02 sing 101 n n 
N3 H5 B02 sing 102 n n 
C2 H6 B02 sing 103 n n 
C6 H7 B02 sing 104 n n 
C21 H8 B02 sing 105 n n 
C21 H9 B02 sing 106 n n 
C7 H10 B02 sing 107 n n 
C13 H11 B02 sing 108 n n 
C12 H12 B02 sing 109 n n 
C10 H13 B02 sing 110 n n 
C9 H14 B02 sing 111 n n 
C19 H15 B02 sing 112 n n 
C18 H16 B02 sing 113 n n 
C17 H17 B02 sing 114 n n 
C20 H18 B02 sing 115 n n 
C20 H19 B02 sing 116 n n 
C20 H20 B02 sing 117 n n 
C15 H21 B02 sing 118 n n 
#
_atom_sites.entry_id                     3VV8 
_atom_sites.fract_transf_matrix[1][1]    0.009812 
_atom_sites.fract_transf_matrix[1][2]    0.005665 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005908 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 501 GOL GOL . 
C 3 B02 A 1 502 701 B02 B02 . 
D 4 HOH A 1 1001 1001 HOH HOH . 
D 4 HOH A 2 1002 1002 HOH HOH . 
D 4 HOH A 3 1003 1003 HOH HOH . 
D 4 HOH A 4 1004 1004 HOH HOH . 
D 4 HOH A 5 1005 1005 HOH HOH . 
D 4 HOH A 6 1006 1006 HOH HOH . 
D 4 HOH A 7 1007 1007 HOH HOH . 
D 4 HOH A 8 1008 1008 HOH HOH . 
D 4 HOH A 9 1009 1009 HOH HOH . 
D 4 HOH A 10 1010 1010 HOH HOH . 
D 4 HOH A 11 1011 1011 HOH HOH . 
D 4 HOH A 12 1012 1012 HOH HOH . 
D 4 HOH A 13 1013 1013 HOH HOH . 
D 4 HOH A 14 1014 1014 HOH HOH . 
D 4 HOH A 15 1015 1015 HOH HOH . 
D 4 HOH A 16 1016 1016 HOH HOH . 
D 4 HOH A 17 1017 1017 HOH HOH . 
D 4 HOH A 18 1018 1018 HOH HOH . 
D 4 HOH A 19 1019 1019 HOH HOH . 
D 4 HOH A 20 1020 1020 HOH HOH . 
D 4 HOH A 21 1021 1021 HOH HOH . 
D 4 HOH A 22 1022 1022 HOH HOH . 
D 4 HOH A 23 1023 1023 HOH HOH . 
D 4 HOH A 24 1024 1025 HOH HOH . 
D 4 HOH A 25 1025 1026 HOH HOH . 
D 4 HOH A 26 1026 1027 HOH HOH . 
D 4 HOH A 27 1027 1028 HOH HOH . 
D 4 HOH A 28 1028 1029 HOH HOH . 
D 4 HOH A 29 1029 1030 HOH HOH . 
D 4 HOH A 30 1030 1031 HOH HOH . 
D 4 HOH A 31 1031 1032 HOH HOH . 
D 4 HOH A 32 1032 1033 HOH HOH . 
D 4 HOH A 33 1033 1034 HOH HOH . 
D 4 HOH A 34 1034 1035 HOH HOH . 
D 4 HOH A 35 1035 1036 HOH HOH . 
D 4 HOH A 36 1036 1037 HOH HOH . 
D 4 HOH A 37 1037 1038 HOH HOH . 
D 4 HOH A 38 1038 1039 HOH HOH . 
D 4 HOH A 39 1039 1041 HOH HOH . 
D 4 HOH A 40 1040 1042 HOH HOH . 
D 4 HOH A 41 1041 1043 HOH HOH . 
D 4 HOH A 42 1042 1044 HOH HOH . 
D 4 HOH A 43 1043 1045 HOH HOH . 
D 4 HOH A 44 1044 1046 HOH HOH . 
D 4 HOH A 45 1045 1047 HOH HOH . 
D 4 HOH A 46 1046 1048 HOH HOH . 
D 4 HOH A 47 1047 1049 HOH HOH . 
D 4 HOH A 48 1048 1050 HOH HOH . 
D 4 HOH A 49 1049 1051 HOH HOH . 
D 4 HOH A 50 1050 1052 HOH HOH . 
D 4 HOH A 51 1051 1053 HOH HOH . 
D 4 HOH A 52 1052 1054 HOH HOH . 
D 4 HOH A 53 1053 1055 HOH HOH . 
D 4 HOH A 54 1054 1056 HOH HOH . 
D 4 HOH A 55 1055 1057 HOH HOH . 
D 4 HOH A 56 1056 1058 HOH HOH . 
D 4 HOH A 57 1057 1059 HOH HOH . 
D 4 HOH A 58 1058 1060 HOH HOH . 
D 4 HOH A 59 1059 1062 HOH HOH . 
D 4 HOH A 60 1060 1064 HOH HOH . 
D 4 HOH A 61 1061 1065 HOH HOH . 
D 4 HOH A 62 1062 1066 HOH HOH . 
D 4 HOH A 63 1063 1068 HOH HOH . 
D 4 HOH A 64 1064 1069 HOH HOH . 
D 4 HOH A 65 1065 1070 HOH HOH . 
D 4 HOH A 66 1066 1071 HOH HOH . 
D 4 HOH A 67 1067 1072 HOH HOH . 
D 4 HOH A 68 1068 1073 HOH HOH . 
D 4 HOH A 69 1069 1075 HOH HOH . 
D 4 HOH A 70 1070 1076 HOH HOH . 
D 4 HOH A 71 1071 1078 HOH HOH . 
D 4 HOH A 72 1072 1079 HOH HOH . 
D 4 HOH A 73 1073 1080 HOH HOH . 
D 4 HOH A 74 1074 1081 HOH HOH . 
D 4 HOH A 75 1075 1082 HOH HOH . 
D 4 HOH A 76 1076 1083 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O B02 . . . C 3 17.156 41.433 -10.06 1 60.41 ? O B02 502 A 1 
HETATM 2 C C1 B02 . . . C 3 16.983 40.419 -9.328 1 60.5 ? C1 B02 502 A 1 
HETATM 3 N N2 B02 . . . C 3 16.474 40.56 -8.015 1 59.56 ? N2 B02 502 A 1 
HETATM 4 C C5 B02 . . . C 3 16.169 41.909 -7.52 1 59.46 ? C5 B02 502 A 1 
HETATM 5 C C4 B02 . . . C 3 16.294 39.404 -7.204 1 56.83 ? C4 B02 502 A 1 
HETATM 6 N N3 B02 . . . C 3 15.815 39.511 -5.939 1 50.87 ? N3 B02 502 A 1 
HETATM 7 N N1 B02 . . . C 3 16.606 38.174 -7.696 1 56.87 ? N1 B02 502 A 1 
HETATM 8 C C3 B02 . . . C 3 17.093 38.014 -8.955 1 58.02 ? C3 B02 502 A 1 
HETATM 9 C C2 B02 . . . C 3 17.286 39.132 -9.785 1 60.3 ? C2 B02 502 A 1 
HETATM 10 C C6 B02 . . . C 3 17.415 36.648 -9.46 1 56.87 ? C6 B02 502 A 1 
HETATM 11 C C21 B02 . . . C 3 18.372 36.76 -10.658 1 55.73 ? C21 B02 502 A 1 
HETATM 12 C C7 B02 . . . C 3 18.894 36.27 -9.308 1 57.04 ? C7 B02 502 A 1 
HETATM 13 C C8 B02 . . . C 3 19.713 37.236 -8.496 1 55.42 ? C8 B02 502 A 1 
HETATM 14 C C13 B02 . . . C 3 20.94 37.694 -8.97 1 55.08 ? C13 B02 502 A 1 
HETATM 15 C C12 B02 . . . C 3 21.735 38.548 -8.203 1 55.12 ? C12 B02 502 A 1 
HETATM 16 C C11 B02 . . . C 3 21.318 38.951 -6.937 1 55.53 ? C11 B02 502 A 1 
HETATM 17 C C10 B02 . . . C 3 20.103 38.481 -6.439 1 54.49 ? C10 B02 502 A 1 
HETATM 18 C C9 B02 . . . C 3 19.32 37.622 -7.212 1 54.84 ? C9 B02 502 A 1 
HETATM 19 C C14 B02 . . . C 3 22.18 39.862 -6.116 1 56.5 ? C14 B02 502 A 1 
HETATM 20 C C19 B02 . . . C 3 23.52 40.018 -6.463 1 55.73 ? C19 B02 502 A 1 
HETATM 21 C C18 B02 . . . C 3 24.337 40.852 -5.704 1 54.63 ? C18 B02 502 A 1 
HETATM 22 C C17 B02 . . . C 3 23.841 41.525 -4.596 1 53.7 ? C17 B02 502 A 1 
HETATM 23 C C16 B02 . . . C 3 22.513 41.363 -4.227 1 53.18 ? C16 B02 502 A 1 
HETATM 24 C C20 B02 . . . C 3 21.984 42.1 -3.025 1 52.48 ? C20 B02 502 A 1 
HETATM 25 C C15 B02 . . . C 3 21.686 40.529 -4.983 1 55.57 ? C15 B02 502 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           25 
#