data_3VV9
#
_model_server_result.job_id            jXZv2YWTmuqll0omNqz1EA 
_model_server_result.datetime_utc      '2024-11-25 12:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    3VV9 
#
_exptl.entry_id    3VV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.38 
_cell.angle_gamma         90 
_cell.entry_id            3VV9 
_cell.length_a            261.312 
_cell.length_b            63.12 
_cell.length_c            136.457 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,K,L,M,S 2 1,2 
D,N,O,P,T 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 190.25725 0 116.497791 
3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 123 A GLU 123 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc2 A OE2 GLU 123 A GLU 123 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 A OE1 GLU 162 A GLU 162 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc4 A OE2 GLU 162 A GLU 162 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc5 A OE2 GLU 213 A GLU 213 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 A OE1 GLU 213 A GLU 213 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc7 A OE1 GLU 266 A GLU 266 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc8 A OE2 GLU 266 A GLU 266 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc9 E FE FE . A FE 501 1_555 G O OH . A OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc10 B OE1 GLU 123 B GLU 123 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc11 B OE2 GLU 123 B GLU 123 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc12 B OE1 GLU 162 B GLU 162 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc13 B OE2 GLU 162 B GLU 162 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
metalc ? metalc14 B OE1 GLU 162 B GLU 162 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc15 B OE1 GLU 213 B GLU 213 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
metalc ? metalc16 B OE2 GLU 213 B GLU 213 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc17 B OE1 GLU 266 B GLU 266 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc18 B OE2 GLU 266 B GLU 266 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc19 H FE FE . B FE 501 1_555 J O OH . B OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc20 C OE2 GLU 123 C GLU 123 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc21 C OE1 GLU 123 C GLU 123 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc22 C OE1 GLU 162 C GLU 162 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc23 C OE2 GLU 162 C GLU 162 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc24 C OE2 GLU 213 C GLU 213 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc25 C OE1 GLU 213 C GLU 213 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc26 C OE1 GLU 266 C GLU 266 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
metalc ? metalc27 C OE2 GLU 266 C GLU 266 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc28 K FE FE . C FE 501 1_555 M O OH . C OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc29 D OE2 GLU 123 D GLU 123 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc30 D OE1 GLU 123 D GLU 123 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc31 D OE1 GLU 162 D GLU 162 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc32 D OE2 GLU 162 D GLU 162 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc33 D OE1 GLU 213 D GLU 213 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc34 D OE2 GLU 213 D GLU 213 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc35 D OE1 GLU 266 D GLU 266 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
metalc ? metalc36 D OE2 GLU 266 D GLU 266 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc37 N FE FE . D FE 501 1_555 P O OH . D OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc38 O FE FE . D FE 502 1_555 P O OH . D OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VV9 
_atom_sites.fract_transf_matrix[1][1]    0.003827 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002334 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE A 1 501 501 FE FE . 
F 2 FE A 1 502 502 FE FE . 
G 3 OH A 1 503 503 OH OH . 
H 2 FE B 1 501 501 FE FE . 
I 2 FE B 1 502 502 FE FE . 
J 3 OH B 1 503 503 OH OH . 
K 2 FE C 1 501 501 FE FE . 
L 2 FE C 1 502 502 FE FE . 
M 3 OH C 1 503 503 OH OH . 
N 2 FE D 1 501 501 FE FE . 
O 2 FE D 1 502 502 FE FE . 
P 3 OH D 1 503 503 OH OH . 
Q 4 HOH A 1 601 3 HOH HOH . 
Q 4 HOH A 2 602 5 HOH HOH . 
Q 4 HOH A 3 603 6 HOH HOH . 
Q 4 HOH A 4 604 7 HOH HOH . 
Q 4 HOH A 5 605 8 HOH HOH . 
Q 4 HOH A 6 606 12 HOH HOH . 
Q 4 HOH A 7 607 13 HOH HOH . 
Q 4 HOH A 8 608 16 HOH HOH . 
Q 4 HOH A 9 609 19 HOH HOH . 
Q 4 HOH A 10 610 26 HOH HOH . 
Q 4 HOH A 11 611 30 HOH HOH . 
Q 4 HOH A 12 612 33 HOH HOH . 
Q 4 HOH A 13 613 34 HOH HOH . 
Q 4 HOH A 14 614 35 HOH HOH . 
R 4 HOH B 1 601 9 HOH HOH . 
R 4 HOH B 2 602 11 HOH HOH . 
R 4 HOH B 3 603 15 HOH HOH . 
R 4 HOH B 4 604 17 HOH HOH . 
R 4 HOH B 5 605 23 HOH HOH . 
R 4 HOH B 6 606 24 HOH HOH . 
R 4 HOH B 7 607 25 HOH HOH . 
R 4 HOH B 8 608 32 HOH HOH . 
S 4 HOH C 1 601 4 HOH HOH . 
S 4 HOH C 2 602 10 HOH HOH . 
S 4 HOH C 3 603 18 HOH HOH . 
S 4 HOH C 4 604 27 HOH HOH . 
S 4 HOH C 5 605 28 HOH HOH . 
S 4 HOH C 6 606 31 HOH HOH . 
S 4 HOH C 7 607 36 HOH HOH . 
T 4 HOH D 1 601 21 HOH HOH . 
T 4 HOH D 2 602 29 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               32.043 
_atom_site.Cartn_y               30.448 
_atom_site.Cartn_z               36.367 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        78.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#