data_3VVF # _model_server_result.job_id wJr3SDpeQQzkfBZypJeVuw _model_server_result.datetime_utc '2024-11-30 01:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3VVF # _exptl.entry_id 3VVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VVF _cell.length_a 68.935 _cell.length_b 68.838 _cell.length_c 104.596 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 121 A CYS 97 1_555 A SG CYS 259 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 121 B CYS 97 1_555 B SG CYS 259 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 3VVF _atom_sites.fract_transf_matrix[1][1] 0.014506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 301 300 ARG ARG . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 A 1 303 6 SO4 SO4 . F 2 ARG B 1 301 300 ARG ARG . G 3 SO4 B 1 302 2 SO4 SO4 . H 3 SO4 B 1 303 4 SO4 SO4 . I 4 HOH A 1 401 3 HOH HOH . I 4 HOH A 2 402 4 HOH HOH . I 4 HOH A 3 403 5 HOH HOH . I 4 HOH A 4 404 9 HOH HOH . I 4 HOH A 5 405 11 HOH HOH . I 4 HOH A 6 406 12 HOH HOH . I 4 HOH A 7 407 13 HOH HOH . I 4 HOH A 8 408 14 HOH HOH . I 4 HOH A 9 409 15 HOH HOH . I 4 HOH A 10 410 16 HOH HOH . I 4 HOH A 11 411 20 HOH HOH . I 4 HOH A 12 412 22 HOH HOH . I 4 HOH A 13 413 23 HOH HOH . I 4 HOH A 14 414 27 HOH HOH . I 4 HOH A 15 415 28 HOH HOH . I 4 HOH A 16 416 32 HOH HOH . I 4 HOH A 17 417 33 HOH HOH . I 4 HOH A 18 418 36 HOH HOH . I 4 HOH A 19 419 38 HOH HOH . I 4 HOH A 20 420 43 HOH HOH . I 4 HOH A 21 421 44 HOH HOH . I 4 HOH A 22 422 49 HOH HOH . I 4 HOH A 23 423 53 HOH HOH . I 4 HOH A 24 424 54 HOH HOH . I 4 HOH A 25 425 58 HOH HOH . I 4 HOH A 26 426 59 HOH HOH . I 4 HOH A 27 427 61 HOH HOH . I 4 HOH A 28 428 62 HOH HOH . I 4 HOH A 29 429 64 HOH HOH . I 4 HOH A 30 430 65 HOH HOH . I 4 HOH A 31 431 67 HOH HOH . I 4 HOH A 32 432 68 HOH HOH . I 4 HOH A 33 433 69 HOH HOH . I 4 HOH A 34 434 70 HOH HOH . I 4 HOH A 35 435 72 HOH HOH . I 4 HOH A 36 436 74 HOH HOH . I 4 HOH A 37 437 75 HOH HOH . I 4 HOH A 38 438 76 HOH HOH . I 4 HOH A 39 439 78 HOH HOH . I 4 HOH A 40 440 79 HOH HOH . I 4 HOH A 41 441 82 HOH HOH . I 4 HOH A 42 442 83 HOH HOH . I 4 HOH A 43 443 84 HOH HOH . I 4 HOH A 44 444 87 HOH HOH . I 4 HOH A 45 445 88 HOH HOH . I 4 HOH A 46 446 89 HOH HOH . I 4 HOH A 47 447 90 HOH HOH . I 4 HOH A 48 448 91 HOH HOH . I 4 HOH A 49 449 96 HOH HOH . I 4 HOH A 50 450 98 HOH HOH . I 4 HOH A 51 451 99 HOH HOH . I 4 HOH A 52 452 100 HOH HOH . I 4 HOH A 53 453 102 HOH HOH . I 4 HOH A 54 454 103 HOH HOH . I 4 HOH A 55 455 105 HOH HOH . I 4 HOH A 56 456 110 HOH HOH . I 4 HOH A 57 457 112 HOH HOH . I 4 HOH A 58 458 115 HOH HOH . I 4 HOH A 59 459 116 HOH HOH . I 4 HOH A 60 460 117 HOH HOH . I 4 HOH A 61 461 118 HOH HOH . I 4 HOH A 62 462 120 HOH HOH . I 4 HOH A 63 463 121 HOH HOH . I 4 HOH A 64 464 122 HOH HOH . I 4 HOH A 65 465 125 HOH HOH . I 4 HOH A 66 466 129 HOH HOH . I 4 HOH A 67 467 131 HOH HOH . I 4 HOH A 68 468 133 HOH HOH . I 4 HOH A 69 469 135 HOH HOH . I 4 HOH A 70 470 136 HOH HOH . I 4 HOH A 71 471 142 HOH HOH . I 4 HOH A 72 472 143 HOH HOH . I 4 HOH A 73 473 144 HOH HOH . I 4 HOH A 74 474 145 HOH HOH . I 4 HOH A 75 475 147 HOH HOH . I 4 HOH A 76 476 148 HOH HOH . I 4 HOH A 77 477 152 HOH HOH . I 4 HOH A 78 478 153 HOH HOH . I 4 HOH A 79 479 154 HOH HOH . I 4 HOH A 80 480 156 HOH HOH . I 4 HOH A 81 481 159 HOH HOH . I 4 HOH A 82 482 162 HOH HOH . I 4 HOH A 83 483 163 HOH HOH . I 4 HOH A 84 484 168 HOH HOH . I 4 HOH A 85 485 170 HOH HOH . I 4 HOH A 86 486 172 HOH HOH . I 4 HOH A 87 487 174 HOH HOH . I 4 HOH A 88 488 176 HOH HOH . I 4 HOH A 89 489 181 HOH HOH . I 4 HOH A 90 490 182 HOH HOH . I 4 HOH A 91 491 186 HOH HOH . I 4 HOH A 92 492 187 HOH HOH . I 4 HOH A 93 493 188 HOH HOH . I 4 HOH A 94 494 189 HOH HOH . I 4 HOH A 95 495 190 HOH HOH . I 4 HOH A 96 496 191 HOH HOH . I 4 HOH A 97 497 192 HOH HOH . J 4 HOH B 1 401 1 HOH HOH . J 4 HOH B 2 402 2 HOH HOH . J 4 HOH B 3 403 7 HOH HOH . J 4 HOH B 4 404 10 HOH HOH . J 4 HOH B 5 405 17 HOH HOH . J 4 HOH B 6 406 18 HOH HOH . J 4 HOH B 7 407 19 HOH HOH . J 4 HOH B 8 408 21 HOH HOH . J 4 HOH B 9 409 24 HOH HOH . J 4 HOH B 10 410 25 HOH HOH . J 4 HOH B 11 411 26 HOH HOH . J 4 HOH B 12 412 29 HOH HOH . J 4 HOH B 13 413 30 HOH HOH . J 4 HOH B 14 414 31 HOH HOH . J 4 HOH B 15 415 34 HOH HOH . J 4 HOH B 16 416 37 HOH HOH . J 4 HOH B 17 417 39 HOH HOH . J 4 HOH B 18 418 40 HOH HOH . J 4 HOH B 19 419 41 HOH HOH . J 4 HOH B 20 420 42 HOH HOH . J 4 HOH B 21 421 45 HOH HOH . J 4 HOH B 22 422 46 HOH HOH . J 4 HOH B 23 423 47 HOH HOH . J 4 HOH B 24 424 48 HOH HOH . J 4 HOH B 25 425 50 HOH HOH . J 4 HOH B 26 426 51 HOH HOH . J 4 HOH B 27 427 52 HOH HOH . J 4 HOH B 28 428 55 HOH HOH . J 4 HOH B 29 429 60 HOH HOH . J 4 HOH B 30 430 63 HOH HOH . J 4 HOH B 31 431 66 HOH HOH . J 4 HOH B 32 432 71 HOH HOH . J 4 HOH B 33 433 73 HOH HOH . J 4 HOH B 34 434 77 HOH HOH . J 4 HOH B 35 435 80 HOH HOH . J 4 HOH B 36 436 85 HOH HOH . J 4 HOH B 37 437 86 HOH HOH . J 4 HOH B 38 438 92 HOH HOH . J 4 HOH B 39 439 93 HOH HOH . J 4 HOH B 40 440 94 HOH HOH . J 4 HOH B 41 441 97 HOH HOH . J 4 HOH B 42 442 101 HOH HOH . J 4 HOH B 43 443 104 HOH HOH . J 4 HOH B 44 444 106 HOH HOH . J 4 HOH B 45 445 107 HOH HOH . J 4 HOH B 46 446 108 HOH HOH . J 4 HOH B 47 447 109 HOH HOH . J 4 HOH B 48 448 111 HOH HOH . J 4 HOH B 49 449 113 HOH HOH . J 4 HOH B 50 450 119 HOH HOH . J 4 HOH B 51 451 123 HOH HOH . J 4 HOH B 52 452 124 HOH HOH . J 4 HOH B 53 453 126 HOH HOH . J 4 HOH B 54 454 127 HOH HOH . J 4 HOH B 55 455 130 HOH HOH . J 4 HOH B 56 456 132 HOH HOH . J 4 HOH B 57 457 137 HOH HOH . J 4 HOH B 58 458 138 HOH HOH . J 4 HOH B 59 459 139 HOH HOH . J 4 HOH B 60 460 140 HOH HOH . J 4 HOH B 61 461 141 HOH HOH . J 4 HOH B 62 462 146 HOH HOH . J 4 HOH B 63 463 149 HOH HOH . J 4 HOH B 64 464 150 HOH HOH . J 4 HOH B 65 465 155 HOH HOH . J 4 HOH B 66 466 157 HOH HOH . J 4 HOH B 67 467 158 HOH HOH . J 4 HOH B 68 468 160 HOH HOH . J 4 HOH B 69 469 161 HOH HOH . J 4 HOH B 70 470 164 HOH HOH . J 4 HOH B 71 471 167 HOH HOH . J 4 HOH B 72 472 169 HOH HOH . J 4 HOH B 73 473 171 HOH HOH . J 4 HOH B 74 474 173 HOH HOH . J 4 HOH B 75 475 175 HOH HOH . J 4 HOH B 76 476 177 HOH HOH . J 4 HOH B 77 477 178 HOH HOH . J 4 HOH B 78 478 179 HOH HOH . J 4 HOH B 79 479 180 HOH HOH . J 4 HOH B 80 480 183 HOH HOH . J 4 HOH B 81 481 184 HOH HOH . J 4 HOH B 82 482 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . C 2 -7.57 -31.034 12.982 1 13.39 ? N ARG 301 A 1 HETATM 2 C CA ARG . . . C 2 -6.652 -31.662 11.929 1 13.78 ? CA ARG 301 A 1 HETATM 3 C C ARG . . . C 2 -5.645 -32.624 12.546 1 14.53 ? C ARG 301 A 1 HETATM 4 O O ARG . . . C 2 -4.797 -33.214 11.867 1 16.22 ? O ARG 301 A 1 HETATM 5 C CB ARG . . . C 2 -5.922 -30.611 11.102 1 14.29 ? CB ARG 301 A 1 HETATM 6 C CG ARG . . . C 2 -4.903 -29.745 11.813 1 15.08 ? CG ARG 301 A 1 HETATM 7 C CD ARG . . . C 2 -4.096 -28.962 10.759 1 15.58 ? CD ARG 301 A 1 HETATM 8 N NE ARG . . . C 2 -3.469 -27.826 11.425 1 16.75 ? NE ARG 301 A 1 HETATM 9 C CZ ARG . . . C 2 -2.866 -26.809 10.82 1 17.7 ? CZ ARG 301 A 1 HETATM 10 N NH1 ARG . . . C 2 -2.333 -25.831 11.566 1 17.63 ? NH1 ARG 301 A 1 HETATM 11 N NH2 ARG . . . C 2 -2.786 -26.762 9.49 1 16.12 ? NH2 ARG 301 A 1 HETATM 12 O OXT ARG . . . C 2 -5.686 -32.85 13.737 1 16 ? OXT ARG 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #