data_3VVH # _model_server_result.job_id TG5FyFc4S-l6JaKLgjT2XQ _model_server_result.datetime_utc '2024-10-18 16:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 3VVH # _exptl.entry_id 3VVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VVH _cell.length_a 58.894 _cell.length_b 129.09 _cell.length_c 135.736 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 D MG MG . A MG 701 1_555 E O1B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc4 D MG MG . A MG 701 1_555 E O2A ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 D MG MG . A MG 701 1_555 M O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc6 D MG MG . A MG 701 1_555 M O HOH . A HOH 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 B OD1 ASN 135 B ASN 195 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 B OD2 ASP 148 B ASP 208 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc9 G MG MG . B MG 501 1_555 H O2A ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc10 G MG MG . B MG 501 1_555 H O1B ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 G MG MG . B MG 501 1_555 N O HOH . B HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc12 G MG MG . B MG 501 1_555 N O HOH . B HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc13 C OD1 ASN 135 C ASN 195 1_555 J MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc14 C OD2 ASP 148 C ASP 208 1_555 J MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc15 J MG MG . C MG 501 1_555 K O1B ATP . C ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc16 J MG MG . C MG 501 1_555 K O2A ATP . C ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 J MG MG . C MG 501 1_555 O O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc18 J MG MG . C MG 501 1_555 O O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VVH _atom_sites.fract_transf_matrix[1][1] 0.01698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 701 701 MG MG . E 3 ATP A 1 702 501 ATP ATP . F 4 4BM A 1 703 1 4BM 4BM . G 2 MG B 1 501 702 MG MG . H 3 ATP B 1 502 502 ATP ATP . I 4 4BM B 1 503 2 4BM 4BM . J 2 MG C 1 501 703 MG MG . K 3 ATP C 1 502 503 ATP ATP . L 4 4BM C 1 503 3 4BM 4BM . M 5 HOH A 1 801 7 HOH HOH . M 5 HOH A 2 802 9 HOH HOH . M 5 HOH A 3 803 16 HOH HOH . M 5 HOH A 4 804 19 HOH HOH . M 5 HOH A 5 805 21 HOH HOH . M 5 HOH A 6 806 26 HOH HOH . M 5 HOH A 7 807 30 HOH HOH . M 5 HOH A 8 808 32 HOH HOH . M 5 HOH A 9 809 33 HOH HOH . M 5 HOH A 10 810 35 HOH HOH . M 5 HOH A 11 811 38 HOH HOH . M 5 HOH A 12 812 39 HOH HOH . M 5 HOH A 13 813 40 HOH HOH . M 5 HOH A 14 814 41 HOH HOH . M 5 HOH A 15 815 44 HOH HOH . M 5 HOH A 16 816 47 HOH HOH . M 5 HOH A 17 817 51 HOH HOH . M 5 HOH A 18 818 52 HOH HOH . M 5 HOH A 19 819 54 HOH HOH . M 5 HOH A 20 820 56 HOH HOH . M 5 HOH A 21 821 59 HOH HOH . M 5 HOH A 22 822 60 HOH HOH . M 5 HOH A 23 823 64 HOH HOH . M 5 HOH A 24 824 66 HOH HOH . M 5 HOH A 25 825 68 HOH HOH . M 5 HOH A 26 826 73 HOH HOH . M 5 HOH A 27 827 74 HOH HOH . M 5 HOH A 28 828 76 HOH HOH . M 5 HOH A 29 829 77 HOH HOH . M 5 HOH A 30 830 80 HOH HOH . M 5 HOH A 31 831 85 HOH HOH . M 5 HOH A 32 832 93 HOH HOH . M 5 HOH A 33 833 95 HOH HOH . M 5 HOH A 34 834 99 HOH HOH . M 5 HOH A 35 835 100 HOH HOH . M 5 HOH A 36 836 102 HOH HOH . M 5 HOH A 37 837 109 HOH HOH . M 5 HOH A 38 838 115 HOH HOH . M 5 HOH A 39 839 117 HOH HOH . M 5 HOH A 40 840 118 HOH HOH . M 5 HOH A 41 841 120 HOH HOH . M 5 HOH A 42 842 125 HOH HOH . M 5 HOH A 43 843 128 HOH HOH . M 5 HOH A 44 844 130 HOH HOH . M 5 HOH A 45 845 132 HOH HOH . M 5 HOH A 46 846 133 HOH HOH . M 5 HOH A 47 847 137 HOH HOH . M 5 HOH A 48 848 139 HOH HOH . M 5 HOH A 49 849 141 HOH HOH . M 5 HOH A 50 850 142 HOH HOH . M 5 HOH A 51 851 144 HOH HOH . M 5 HOH A 52 852 145 HOH HOH . M 5 HOH A 53 853 146 HOH HOH . M 5 HOH A 54 854 148 HOH HOH . M 5 HOH A 55 855 149 HOH HOH . M 5 HOH A 56 856 154 HOH HOH . M 5 HOH A 57 857 157 HOH HOH . M 5 HOH A 58 858 161 HOH HOH . M 5 HOH A 59 859 169 HOH HOH . M 5 HOH A 60 860 180 HOH HOH . M 5 HOH A 61 861 182 HOH HOH . M 5 HOH A 62 862 183 HOH HOH . M 5 HOH A 63 863 186 HOH HOH . M 5 HOH A 64 864 187 HOH HOH . M 5 HOH A 65 865 196 HOH HOH . M 5 HOH A 66 866 210 HOH HOH . M 5 HOH A 67 867 212 HOH HOH . M 5 HOH A 68 868 224 HOH HOH . M 5 HOH A 69 869 225 HOH HOH . M 5 HOH A 70 870 227 HOH HOH . M 5 HOH A 71 871 232 HOH HOH . M 5 HOH A 72 872 207 HOH HOH . N 5 HOH B 1 601 1 HOH HOH . N 5 HOH B 2 602 3 HOH HOH . N 5 HOH B 3 603 4 HOH HOH . N 5 HOH B 4 604 5 HOH HOH . N 5 HOH B 5 605 6 HOH HOH . N 5 HOH B 6 606 8 HOH HOH . N 5 HOH B 7 607 10 HOH HOH . N 5 HOH B 8 608 12 HOH HOH . N 5 HOH B 9 609 15 HOH HOH . N 5 HOH B 10 610 17 HOH HOH . N 5 HOH B 11 611 22 HOH HOH . N 5 HOH B 12 612 24 HOH HOH . N 5 HOH B 13 613 25 HOH HOH . N 5 HOH B 14 614 28 HOH HOH . N 5 HOH B 15 615 29 HOH HOH . N 5 HOH B 16 616 34 HOH HOH . N 5 HOH B 17 617 36 HOH HOH . N 5 HOH B 18 618 37 HOH HOH . N 5 HOH B 19 619 42 HOH HOH . N 5 HOH B 20 620 43 HOH HOH . N 5 HOH B 21 621 45 HOH HOH . N 5 HOH B 22 622 46 HOH HOH . N 5 HOH B 23 623 48 HOH HOH . N 5 HOH B 24 624 50 HOH HOH . N 5 HOH B 25 625 55 HOH HOH . N 5 HOH B 26 626 61 HOH HOH . N 5 HOH B 27 627 62 HOH HOH . N 5 HOH B 28 628 63 HOH HOH . N 5 HOH B 29 629 65 HOH HOH . N 5 HOH B 30 630 70 HOH HOH . N 5 HOH B 31 631 72 HOH HOH . N 5 HOH B 32 632 78 HOH HOH . N 5 HOH B 33 633 81 HOH HOH . N 5 HOH B 34 634 82 HOH HOH . N 5 HOH B 35 635 83 HOH HOH . N 5 HOH B 36 636 86 HOH HOH . N 5 HOH B 37 637 88 HOH HOH . N 5 HOH B 38 638 90 HOH HOH . N 5 HOH B 39 639 91 HOH HOH . N 5 HOH B 40 640 97 HOH HOH . N 5 HOH B 41 641 104 HOH HOH . N 5 HOH B 42 642 105 HOH HOH . N 5 HOH B 43 643 107 HOH HOH . N 5 HOH B 44 644 112 HOH HOH . N 5 HOH B 45 645 113 HOH HOH . N 5 HOH B 46 646 116 HOH HOH . N 5 HOH B 47 647 121 HOH HOH . N 5 HOH B 48 648 123 HOH HOH . N 5 HOH B 49 649 124 HOH HOH . N 5 HOH B 50 650 126 HOH HOH . N 5 HOH B 51 651 129 HOH HOH . N 5 HOH B 52 652 131 HOH HOH . N 5 HOH B 53 653 134 HOH HOH . N 5 HOH B 54 654 135 HOH HOH . N 5 HOH B 55 655 136 HOH HOH . N 5 HOH B 56 656 143 HOH HOH . N 5 HOH B 57 657 147 HOH HOH . N 5 HOH B 58 658 150 HOH HOH . N 5 HOH B 59 659 152 HOH HOH . N 5 HOH B 60 660 156 HOH HOH . N 5 HOH B 61 661 158 HOH HOH . N 5 HOH B 62 662 160 HOH HOH . N 5 HOH B 63 663 164 HOH HOH . N 5 HOH B 64 664 166 HOH HOH . N 5 HOH B 65 665 168 HOH HOH . N 5 HOH B 66 666 171 HOH HOH . N 5 HOH B 67 667 174 HOH HOH . N 5 HOH B 68 668 175 HOH HOH . N 5 HOH B 69 669 177 HOH HOH . N 5 HOH B 70 670 178 HOH HOH . N 5 HOH B 71 671 179 HOH HOH . N 5 HOH B 72 672 184 HOH HOH . N 5 HOH B 73 673 189 HOH HOH . N 5 HOH B 74 674 190 HOH HOH . N 5 HOH B 75 675 191 HOH HOH . N 5 HOH B 76 676 198 HOH HOH . N 5 HOH B 77 677 199 HOH HOH . N 5 HOH B 78 678 201 HOH HOH . N 5 HOH B 79 679 202 HOH HOH . N 5 HOH B 80 680 203 HOH HOH . N 5 HOH B 81 681 204 HOH HOH . N 5 HOH B 82 682 205 HOH HOH . N 5 HOH B 83 683 211 HOH HOH . N 5 HOH B 84 684 214 HOH HOH . N 5 HOH B 85 685 215 HOH HOH . N 5 HOH B 86 686 216 HOH HOH . N 5 HOH B 87 687 218 HOH HOH . N 5 HOH B 88 688 219 HOH HOH . N 5 HOH B 89 689 222 HOH HOH . N 5 HOH B 90 690 223 HOH HOH . N 5 HOH B 91 691 229 HOH HOH . N 5 HOH B 92 692 230 HOH HOH . N 5 HOH B 93 693 233 HOH HOH . O 5 HOH C 1 601 2 HOH HOH . O 5 HOH C 2 602 11 HOH HOH . O 5 HOH C 3 603 13 HOH HOH . O 5 HOH C 4 604 14 HOH HOH . O 5 HOH C 5 605 18 HOH HOH . O 5 HOH C 6 606 20 HOH HOH . O 5 HOH C 7 607 23 HOH HOH . O 5 HOH C 8 608 27 HOH HOH . O 5 HOH C 9 609 31 HOH HOH . O 5 HOH C 10 610 49 HOH HOH . O 5 HOH C 11 611 53 HOH HOH . O 5 HOH C 12 612 57 HOH HOH . O 5 HOH C 13 613 58 HOH HOH . O 5 HOH C 14 614 67 HOH HOH . O 5 HOH C 15 615 69 HOH HOH . O 5 HOH C 16 616 71 HOH HOH . O 5 HOH C 17 617 75 HOH HOH . O 5 HOH C 18 618 79 HOH HOH . O 5 HOH C 19 619 84 HOH HOH . O 5 HOH C 20 620 87 HOH HOH . O 5 HOH C 21 621 89 HOH HOH . O 5 HOH C 22 622 92 HOH HOH . O 5 HOH C 23 623 94 HOH HOH . O 5 HOH C 24 624 96 HOH HOH . O 5 HOH C 25 625 98 HOH HOH . O 5 HOH C 26 626 101 HOH HOH . O 5 HOH C 27 627 103 HOH HOH . O 5 HOH C 28 628 106 HOH HOH . O 5 HOH C 29 629 108 HOH HOH . O 5 HOH C 30 630 110 HOH HOH . O 5 HOH C 31 631 111 HOH HOH . O 5 HOH C 32 632 114 HOH HOH . O 5 HOH C 33 633 119 HOH HOH . O 5 HOH C 34 634 122 HOH HOH . O 5 HOH C 35 635 127 HOH HOH . O 5 HOH C 36 636 138 HOH HOH . O 5 HOH C 37 637 140 HOH HOH . O 5 HOH C 38 638 151 HOH HOH . O 5 HOH C 39 639 153 HOH HOH . O 5 HOH C 40 640 155 HOH HOH . O 5 HOH C 41 641 159 HOH HOH . O 5 HOH C 42 642 162 HOH HOH . O 5 HOH C 43 643 163 HOH HOH . O 5 HOH C 44 644 165 HOH HOH . O 5 HOH C 45 645 167 HOH HOH . O 5 HOH C 46 646 170 HOH HOH . O 5 HOH C 47 647 172 HOH HOH . O 5 HOH C 48 648 173 HOH HOH . O 5 HOH C 49 649 176 HOH HOH . O 5 HOH C 50 650 185 HOH HOH . O 5 HOH C 51 651 188 HOH HOH . O 5 HOH C 52 652 192 HOH HOH . O 5 HOH C 53 653 193 HOH HOH . O 5 HOH C 54 654 194 HOH HOH . O 5 HOH C 55 655 195 HOH HOH . O 5 HOH C 56 656 197 HOH HOH . O 5 HOH C 57 657 200 HOH HOH . O 5 HOH C 58 658 206 HOH HOH . O 5 HOH C 59 659 208 HOH HOH . O 5 HOH C 60 660 213 HOH HOH . O 5 HOH C 61 661 217 HOH HOH . O 5 HOH C 62 662 220 HOH HOH . O 5 HOH C 63 663 226 HOH HOH . O 5 HOH C 64 664 228 HOH HOH . O 5 HOH C 65 665 231 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.491 _atom_site.Cartn_y 154.411 _atom_site.Cartn_z -17.622 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #