data_3VVS # _model_server_result.job_id sNmHV3dvfh2XNC9IvhVUcw _model_server_result.datetime_utc '2025-01-05 16:06:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3VVS # _exptl.entry_id 3VVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.84 _cell.angle_gamma 90 _cell.entry_id 3VVS _cell.length_a 155.091 _cell.length_b 59.97 _cell.length_c 68.525 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N DPN 2 B DPN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B CH3 ACE 1 B ACE 0 1_555 B SG CYS 8 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale3 B C DPN 2 B DPN 1 1_555 B N VAL 3 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 266 n n C10 C9 OLC doub 267 n n C10 C11 OLC sing 268 n n C9 C8 OLC sing 269 n n C17 C16 OLC sing 270 z n C11 C12 OLC sing 271 n n C8 C7 OLC sing 272 n n C24 C22 OLC sing 273 n n C24 O25 OLC sing 274 n n C16 C15 OLC sing 275 n n C12 C13 OLC sing 276 n n C7 C6 OLC sing 277 n n C15 C14 OLC sing 278 n n C13 C14 OLC sing 279 n n C6 C5 OLC sing 280 n n C5 C4 OLC sing 281 n n C4 C3 OLC sing 282 n n C3 C2 OLC sing 283 n n C2 C1 OLC sing 284 n n C21 C22 OLC sing 285 n n C21 O20 OLC sing 286 n n C1 O19 OLC doub 287 n n C1 O20 OLC sing 288 n n C22 O23 OLC sing 289 n n C18 H18 OLC sing 290 n n C18 H18A OLC sing 291 n n C18 H18B OLC sing 292 n n C10 H10 OLC sing 293 n n C9 H9 OLC sing 294 n n C17 H17 OLC sing 295 n n C17 H17A OLC sing 296 n n C11 H11 OLC sing 297 n n C11 H11A OLC sing 298 n n C8 H8 OLC sing 299 n n C8 H8A OLC sing 300 n n C24 H24 OLC sing 301 n n C24 H24A OLC sing 302 n n C16 H16 OLC sing 303 n n C16 H16A OLC sing 304 n n C12 H12 OLC sing 305 n n C12 H12A OLC sing 306 n n C7 H7 OLC sing 307 n n C7 H7A OLC sing 308 n n C15 H15 OLC sing 309 n n C15 H15A OLC sing 310 n n C13 H13 OLC sing 311 n n C13 H13A OLC sing 312 n n C6 H6 OLC sing 313 n n C6 H6A OLC sing 314 n n C14 H14 OLC sing 315 n n C14 H14A OLC sing 316 n n C5 H5 OLC sing 317 n n C5 H5A OLC sing 318 n n C4 H4 OLC sing 319 n n C4 H4A OLC sing 320 n n C3 H3 OLC sing 321 n n C3 H3A OLC sing 322 n n C2 H2 OLC sing 323 n n C2 H2A OLC sing 324 n n C21 H21 OLC sing 325 n n C21 H21A OLC sing 326 n n C22 H22 OLC sing 327 n n O25 HO25 OLC sing 328 n n O23 HO23 OLC sing 329 n n # _atom_sites.entry_id 3VVS _atom_sites.fract_transf_matrix[1][1] 0.006448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000208 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OLC A 1 501 1 OLC OLA . D 3 OLC A 1 502 2 OLC OLA . E 3 OLC A 1 503 3 OLC OLA . F 3 OLC A 1 504 4 OLC OLA . G 3 OLC A 1 505 5 OLC OLA . H 3 OLC A 1 506 6 OLC OLA . I 3 OLC A 1 507 7 OLC OLA . J 3 OLC A 1 508 8 OLC OLA . K 3 OLC A 1 509 9 OLC OLA . L 3 OLC A 1 510 10 OLC OLA . M 3 OLC A 1 511 11 OLC OLA . N 3 OLC A 1 512 12 OLC OLA . O 4 HOH A 1 601 1 HOH HOH . O 4 HOH A 2 602 2 HOH HOH . O 4 HOH A 3 603 3 HOH HOH . O 4 HOH A 4 604 4 HOH HOH . O 4 HOH A 5 605 5 HOH HOH . O 4 HOH A 6 606 6 HOH HOH . O 4 HOH A 7 607 7 HOH HOH . O 4 HOH A 8 608 9 HOH HOH . O 4 HOH A 9 609 10 HOH HOH . O 4 HOH A 10 610 11 HOH HOH . O 4 HOH A 11 611 12 HOH HOH . O 4 HOH A 12 612 14 HOH HOH . O 4 HOH A 13 613 15 HOH HOH . O 4 HOH A 14 614 18 HOH HOH . O 4 HOH A 15 615 19 HOH HOH . O 4 HOH A 16 616 22 HOH HOH . O 4 HOH A 17 617 23 HOH HOH . O 4 HOH A 18 618 25 HOH HOH . O 4 HOH A 19 619 26 HOH HOH . O 4 HOH A 20 620 27 HOH HOH . O 4 HOH A 21 621 28 HOH HOH . O 4 HOH A 22 622 31 HOH HOH . O 4 HOH A 23 623 32 HOH HOH . O 4 HOH A 24 624 34 HOH HOH . O 4 HOH A 25 625 35 HOH HOH . O 4 HOH A 26 626 36 HOH HOH . O 4 HOH A 27 627 45 HOH HOH . O 4 HOH A 28 628 49 HOH HOH . O 4 HOH A 29 629 52 HOH HOH . O 4 HOH A 30 630 53 HOH HOH . O 4 HOH A 31 631 55 HOH HOH . O 4 HOH A 32 632 56 HOH HOH . O 4 HOH A 33 633 57 HOH HOH . O 4 HOH A 34 634 58 HOH HOH . O 4 HOH A 35 635 60 HOH HOH . O 4 HOH A 36 636 61 HOH HOH . O 4 HOH A 37 637 62 HOH HOH . O 4 HOH A 38 638 63 HOH HOH . O 4 HOH A 39 639 64 HOH HOH . O 4 HOH A 40 640 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . C 3 -22.078 42.052 4.085 1 69.82 ? C10 OLC 501 A 1 HETATM 2 C C9 OLC . . . C 3 -23.203 42.56 4.883 1 66.56 ? C9 OLC 501 A 1 HETATM 3 C C11 OLC . . . C 3 -20.985 41.268 4.773 1 70.24 ? C11 OLC 501 A 1 HETATM 4 C C8 OLC . . . C 3 -23.838 41.656 5.911 1 60.7 ? C8 OLC 501 A 1 HETATM 5 C C12 OLC . . . C 3 -19.928 40.856 3.756 1 69.36 ? C12 OLC 501 A 1 HETATM 6 C C7 OLC . . . C 3 -25.197 42.204 6.328 1 53.97 ? C7 OLC 501 A 1 HETATM 7 C C13 OLC . . . C 3 -19.234 42.066 3.15 1 66.2 ? C13 OLC 501 A 1 HETATM 8 C C6 OLC . . . C 3 -25.986 42.714 5.129 1 48.09 ? C6 OLC 501 A 1 HETATM 9 C C5 OLC . . . C 3 -27.168 43.569 5.571 1 42.94 ? C5 OLC 501 A 1 HETATM 10 C C4 OLC . . . C 3 -26.735 44.983 5.947 1 37.67 ? C4 OLC 501 A 1 HETATM 11 C C3 OLC . . . C 3 -27.957 45.854 6.216 1 37.57 ? C3 OLC 501 A 1 HETATM 12 C C2 OLC . . . C 3 -27.734 46.781 7.403 1 34.57 ? C2 OLC 501 A 1 HETATM 13 C C1 OLC . . . C 3 -28.87 46.611 8.382 1 30.11 ? C1 OLC 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #