data_3VVZ
#
_model_server_result.job_id            9K37rcDFS3Il33D1pjrEnQ 
_model_server_result.datetime_utc      '2024-10-14 18:28:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vvz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    3VVZ 
#
_exptl.entry_id    3VVZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.557 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RHODAMINE 6G' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         104.54 
_cell.angle_beta          97.32 
_cell.angle_gamma         90 
_cell.entry_id            3VVZ 
_cell.length_a            43.717 
_cell.length_b            54.329 
_cell.length_c            92.296 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VVZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C28 H31 N2 O3 1' 
_chem_comp.formula_weight    443.557 
_chem_comp.id                RHQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RHODAMINE 6G' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RHQ sing 277 n y 
C1 C6 RHQ doub 278 n y 
C1 O1 RHQ sing 279 n y 
C2 C3 RHQ sing 280 n y 
C2 C9 RHQ doub 281 n y 
C3 C4 RHQ doub 282 n y 
C3 H31 RHQ sing 283 n n 
C4 C5 RHQ sing 284 n y 
C4 C21 RHQ sing 285 n n 
C5 C6 RHQ sing 286 n y 
C5 N2 RHQ doub 287 z n 
C6 H61 RHQ sing 288 n n 
O1 C7 RHQ sing 289 n y 
C7 C8 RHQ doub 290 n y 
C7 C10 RHQ sing 291 n y 
C8 C9 RHQ sing 292 n y 
C8 C13 RHQ sing 293 n y 
C9 C14 RHQ sing 294 n y 
C10 C11 RHQ doub 295 n y 
C10 H101 RHQ sing 296 n n 
C11 C12 RHQ sing 297 n y 
C11 N1 RHQ sing 298 n n 
C12 C13 RHQ doub 299 n y 
C12 C20 RHQ sing 300 n n 
C13 H131 RHQ sing 301 n n 
N1 C22 RHQ sing 302 n n 
N1 HN11 RHQ sing 303 n n 
C14 C15 RHQ doub 304 n y 
C14 C19 RHQ sing 305 n y 
C15 C16 RHQ sing 306 n y 
C15 H151 RHQ sing 307 n n 
C16 C17 RHQ doub 308 n y 
C16 H161 RHQ sing 309 n n 
C17 C18 RHQ sing 310 n y 
C17 H171 RHQ sing 311 n n 
C18 C19 RHQ doub 312 n y 
C18 H181 RHQ sing 313 n n 
C19 C26 RHQ sing 314 n n 
C20 H201 RHQ sing 315 n n 
C20 H202 RHQ sing 316 n n 
C20 H203 RHQ sing 317 n n 
C21 H211 RHQ sing 318 n n 
C21 H212 RHQ sing 319 n n 
C21 H213 RHQ sing 320 n n 
C22 C23 RHQ sing 321 n n 
C22 H221 RHQ sing 322 n n 
C22 H222 RHQ sing 323 n n 
C23 H231 RHQ sing 324 n n 
C23 H232 RHQ sing 325 n n 
C23 H233 RHQ sing 326 n n 
N2 C24 RHQ sing 327 n n 
N2 HN21 RHQ sing 328 n n 
C24 C25 RHQ sing 329 n n 
C24 H241 RHQ sing 330 n n 
C24 H242 RHQ sing 331 n n 
C25 H251 RHQ sing 332 n n 
C25 H252 RHQ sing 333 n n 
C25 H253 RHQ sing 334 n n 
C26 O27 RHQ doub 335 n n 
C26 O2 RHQ sing 336 n n 
O2 C28 RHQ sing 337 n n 
C28 C29 RHQ sing 338 n n 
C28 H281 RHQ sing 339 n n 
C28 H282 RHQ sing 340 n n 
C29 H291 RHQ sing 341 n n 
C29 H292 RHQ sing 342 n n 
C29 H293 RHQ sing 343 n n 
#
_atom_sites.entry_id                     3VVZ 
_atom_sites.fract_transf_matrix[1][1]    0.022874 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003037 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018406 
_atom_sites.fract_transf_matrix[2][3]    0.004816 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RHQ A 1 301 301 RHQ RHQ . 
F 3 SO4 A 1 302 302 SO4 SO4 . 
G 2 RHQ B 1 301 301 RHQ RHQ . 
H 3 SO4 B 1 302 302 SO4 SO4 . 
I 2 RHQ C 1 301 301 RHQ RHQ . 
J 3 SO4 C 1 302 302 SO4 SO4 . 
K 2 RHQ D 1 301 301 RHQ RHQ . 
L 3 SO4 D 1 302 302 SO4 SO4 . 
M 4 HOH A 1 401 401 HOH HOH . 
M 4 HOH A 2 402 402 HOH HOH . 
M 4 HOH A 3 403 403 HOH HOH . 
M 4 HOH A 4 404 404 HOH HOH . 
M 4 HOH A 5 405 405 HOH HOH . 
M 4 HOH A 6 406 406 HOH HOH . 
M 4 HOH A 7 407 407 HOH HOH . 
M 4 HOH A 8 408 408 HOH HOH . 
M 4 HOH A 9 409 409 HOH HOH . 
M 4 HOH A 10 410 410 HOH HOH . 
M 4 HOH A 11 411 411 HOH HOH . 
M 4 HOH A 12 412 412 HOH HOH . 
M 4 HOH A 13 413 413 HOH HOH . 
N 4 HOH B 1 401 414 HOH HOH . 
N 4 HOH B 2 402 401 HOH HOH . 
N 4 HOH B 3 403 402 HOH HOH . 
N 4 HOH B 4 404 403 HOH HOH . 
N 4 HOH B 5 405 404 HOH HOH . 
N 4 HOH B 6 406 405 HOH HOH . 
N 4 HOH B 7 407 406 HOH HOH . 
N 4 HOH B 8 408 407 HOH HOH . 
O 4 HOH C 1 401 401 HOH HOH . 
O 4 HOH C 2 402 402 HOH HOH . 
O 4 HOH C 3 403 403 HOH HOH . 
O 4 HOH C 4 404 404 HOH HOH . 
O 4 HOH C 5 405 405 HOH HOH . 
O 4 HOH C 6 406 406 HOH HOH . 
O 4 HOH C 7 407 407 HOH HOH . 
O 4 HOH C 8 408 408 HOH HOH . 
P 4 HOH D 1 401 401 HOH HOH . 
P 4 HOH D 2 402 402 HOH HOH . 
P 4 HOH D 3 403 403 HOH HOH . 
P 4 HOH D 4 404 404 HOH HOH . 
P 4 HOH D 5 405 405 HOH HOH . 
P 4 HOH D 6 406 406 HOH HOH . 
P 4 HOH D 7 407 407 HOH HOH . 
P 4 HOH D 8 408 408 HOH HOH . 
P 4 HOH D 9 409 409 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RHQ . . . E 2 5.013 16.543 -34.47 1 55.84 ? C1 RHQ 301 A 1 
HETATM 2 C C2 RHQ . . . E 2 3.831 16.482 -35.186 1 54.72 ? C2 RHQ 301 A 1 
HETATM 3 C C3 RHQ . . . E 2 2.907 17.523 -35.116 1 55.81 ? C3 RHQ 301 A 1 
HETATM 4 C C4 RHQ . . . E 2 3.17 18.641 -34.319 1 58.71 ? C4 RHQ 301 A 1 
HETATM 5 C C5 RHQ . . . E 2 4.358 18.711 -33.599 1 58.72 ? C5 RHQ 301 A 1 
HETATM 6 C C6 RHQ . . . E 2 5.267 17.649 -33.682 1 57.7 ? C6 RHQ 301 A 1 
HETATM 7 O O1 RHQ . . . E 2 5.929 15.508 -34.514 1 58.52 ? O1 RHQ 301 A 1 
HETATM 8 C C7 RHQ . . . E 2 5.694 14.391 -35.293 1 56.23 ? C7 RHQ 301 A 1 
HETATM 9 C C8 RHQ . . . E 2 4.52 14.31 -36.034 1 55.1 ? C8 RHQ 301 A 1 
HETATM 10 C C9 RHQ . . . E 2 3.574 15.373 -35.965 1 54.07 ? C9 RHQ 301 A 1 
HETATM 11 C C10 RHQ . . . E 2 6.634 13.37 -35.312 1 57.1 ? C10 RHQ 301 A 1 
HETATM 12 C C11 RHQ . . . E 2 6.421 12.231 -36.083 1 58.07 ? C11 RHQ 301 A 1 
HETATM 13 C C12 RHQ . . . E 2 5.244 12.131 -36.824 1 57.05 ? C12 RHQ 301 A 1 
HETATM 14 C C13 RHQ . . . E 2 4.302 13.155 -36.802 1 55.36 ? C13 RHQ 301 A 1 
HETATM 15 N N1 RHQ . . . E 2 7.352 11.24 -36.094 1 59.82 ? N1 RHQ 301 A 1 
HETATM 16 C C14 RHQ . . . E 2 2.3 15.364 -36.752 1 54.34 ? C14 RHQ 301 A 1 
HETATM 17 C C15 RHQ . . . E 2 1.204 14.693 -36.231 1 53.94 ? C15 RHQ 301 A 1 
HETATM 18 C C16 RHQ . . . E 2 0.005 14.663 -36.97 1 55.78 ? C16 RHQ 301 A 1 
HETATM 19 C C17 RHQ . . . E 2 -0.109 15.278 -38.225 1 53.22 ? C17 RHQ 301 A 1 
HETATM 20 C C18 RHQ . . . E 2 0.996 15.952 -38.741 1 53.49 ? C18 RHQ 301 A 1 
HETATM 21 C C19 RHQ . . . E 2 2.191 16.009 -38.018 1 56.1 ? C19 RHQ 301 A 1 
HETATM 22 C C20 RHQ . . . E 2 4.955 10.923 -37.683 1 58.54 ? C20 RHQ 301 A 1 
HETATM 23 C C21 RHQ . . . E 2 2.197 19.813 -34.242 1 58.07 ? C21 RHQ 301 A 1 
HETATM 24 C C22 RHQ . . . E 2 8.372 11.21 -35.012 1 62.76 ? C22 RHQ 301 A 1 
HETATM 25 C C23 RHQ . . . E 2 7.963 10.772 -33.652 1 61.4 ? C23 RHQ 301 A 1 
HETATM 26 N N2 RHQ . . . E 2 4.598 19.86 -32.786 1 58.68 ? N2 RHQ 301 A 1 
HETATM 27 C C24 RHQ . . . E 2 5.635 19.546 -31.678 1 59.44 ? C24 RHQ 301 A 1 
HETATM 28 C C25 RHQ . . . E 2 5.787 20.802 -30.843 1 60.01 ? C25 RHQ 301 A 1 
HETATM 29 C C26 RHQ . . . E 2 3.305 16.787 -38.702 1 61.11 ? C26 RHQ 301 A 1 
HETATM 30 O O27 RHQ . . . E 2 4.4 16.982 -38.168 1 61.52 ? O27 RHQ 301 A 1 
HETATM 31 O O2 RHQ . . . E 2 3.068 17.343 -40.058 1 63.99 ? O2 RHQ 301 A 1 
HETATM 32 C C28 RHQ . . . E 2 4.107 18.01 -40.805 1 64.11 ? C28 RHQ 301 A 1 
HETATM 33 C C29 RHQ . . . E 2 3.693 18.171 -42.274 1 62.57 ? C29 RHQ 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           645 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           33 
#