data_3VW0
#
_model_server_result.job_id            rN33NYJCF92YHh92JFbhTg 
_model_server_result.datetime_utc      '2024-11-25 12:37:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vw0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    3VW0 
#
_exptl.entry_id    3VW0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.665 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DEQUALINIUM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.21 
_cell.angle_gamma         90 
_cell.entry_id            3VW0 
_cell.length_a            187.345 
_cell.length_b            43.551 
_cell.length_c            106.692 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VW0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
_chem_comp.formula           'C30 H40 N4 2' 
_chem_comp.formula_weight    456.665 
_chem_comp.id                DEQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DEQUALINIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DEQUADIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEQ doub 83 n y 
C1 C5 DEQ sing 84 n y 
C1 H11 DEQ sing 85 n n 
C2 C3 DEQ sing 86 n y 
C2 H21 DEQ sing 87 n n 
C3 C4 DEQ doub 88 n y 
C3 H31 DEQ sing 89 n n 
C4 C6 DEQ sing 90 n y 
C4 H41 DEQ sing 91 n n 
C5 C6 DEQ doub 92 n y 
C5 N1 DEQ sing 93 n y 
C6 C7 DEQ sing 94 n y 
C7 C8 DEQ doub 95 n y 
C7 N4 DEQ sing 96 n n 
C8 C9 DEQ sing 97 n y 
C8 H81 DEQ sing 98 n n 
C9 N1 DEQ doub 99 n y 
C9 C30 DEQ sing 100 n n 
N1 C28 DEQ sing 101 n n 
C10 C11 DEQ doub 102 n y 
C10 C14 DEQ sing 103 n y 
C10 C15 DEQ sing 104 n y 
C11 N2 DEQ sing 105 n y 
C11 C18 DEQ sing 106 n y 
N2 C12 DEQ doub 107 n y 
N2 C19 DEQ sing 108 n n 
C12 C13 DEQ sing 109 n y 
C12 C29 DEQ sing 110 n n 
C13 C14 DEQ doub 111 n y 
C13 H131 DEQ sing 112 n n 
C14 N3 DEQ sing 113 n n 
C15 C16 DEQ doub 114 n y 
C15 H151 DEQ sing 115 n n 
C16 C17 DEQ sing 116 n y 
C16 H161 DEQ sing 117 n n 
C17 C18 DEQ doub 118 n y 
C17 H171 DEQ sing 119 n n 
C18 H181 DEQ sing 120 n n 
C19 C20 DEQ sing 121 n n 
C19 H191 DEQ sing 122 n n 
C19 H192 DEQ sing 123 n n 
C20 C21 DEQ sing 124 n n 
C20 H201 DEQ sing 125 n n 
C20 H202 DEQ sing 126 n n 
C21 C22 DEQ sing 127 n n 
C21 H211 DEQ sing 128 n n 
C21 H212 DEQ sing 129 n n 
C22 C23 DEQ sing 130 n n 
C22 H221 DEQ sing 131 n n 
C22 H222 DEQ sing 132 n n 
C23 C24 DEQ sing 133 n n 
C23 H231 DEQ sing 134 n n 
C23 H232 DEQ sing 135 n n 
C24 C25 DEQ sing 136 n n 
C24 H241 DEQ sing 137 n n 
C24 H242 DEQ sing 138 n n 
C25 C26 DEQ sing 139 n n 
C25 H251 DEQ sing 140 n n 
C25 H252 DEQ sing 141 n n 
C26 C27 DEQ sing 142 n n 
C26 H261 DEQ sing 143 n n 
C26 H262 DEQ sing 144 n n 
C27 C28 DEQ sing 145 n n 
C27 H271 DEQ sing 146 n n 
C27 H272 DEQ sing 147 n n 
C28 H281 DEQ sing 148 n n 
C28 H282 DEQ sing 149 n n 
C30 H301 DEQ sing 150 n n 
C30 H302 DEQ sing 151 n n 
C30 H303 DEQ sing 152 n n 
C29 H291 DEQ sing 153 n n 
C29 H292 DEQ sing 154 n n 
C29 H293 DEQ sing 155 n n 
N4 HN41 DEQ sing 156 n n 
N4 HN42 DEQ sing 157 n n 
N3 HN31 DEQ sing 158 n n 
N3 HN32 DEQ sing 159 n n 
#
_atom_sites.entry_id                     3VW0 
_atom_sites.fract_transf_matrix[1][1]    0.005338 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000961 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022962 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 201 302 SO4 SO4 . 
F 3 DEQ B 1 301 301 DEQ DEQ . 
G 2 SO4 B 1 302 302 SO4 SO4 . 
H 2 SO4 C 1 201 302 SO4 SO4 . 
I 3 DEQ D 1 301 301 DEQ DEQ . 
J 2 SO4 D 1 302 302 SO4 SO4 . 
K 4 HOH A 1 401 401 HOH HOH . 
K 4 HOH A 2 402 402 HOH HOH . 
K 4 HOH A 3 403 403 HOH HOH . 
K 4 HOH A 4 404 404 HOH HOH . 
K 4 HOH A 5 405 405 HOH HOH . 
K 4 HOH A 6 406 406 HOH HOH . 
K 4 HOH A 7 407 407 HOH HOH . 
K 4 HOH A 8 408 408 HOH HOH . 
L 4 HOH B 1 401 401 HOH HOH . 
L 4 HOH B 2 402 402 HOH HOH . 
L 4 HOH B 3 403 403 HOH HOH . 
L 4 HOH B 4 404 404 HOH HOH . 
L 4 HOH B 5 405 405 HOH HOH . 
L 4 HOH B 6 406 406 HOH HOH . 
L 4 HOH B 7 407 407 HOH HOH . 
L 4 HOH B 8 408 408 HOH HOH . 
L 4 HOH B 9 409 409 HOH HOH . 
L 4 HOH B 10 410 410 HOH HOH . 
L 4 HOH B 11 411 411 HOH HOH . 
L 4 HOH B 12 412 412 HOH HOH . 
L 4 HOH B 13 413 413 HOH HOH . 
L 4 HOH B 14 414 414 HOH HOH . 
L 4 HOH B 15 415 415 HOH HOH . 
L 4 HOH B 16 416 416 HOH HOH . 
L 4 HOH B 17 417 417 HOH HOH . 
L 4 HOH B 18 418 418 HOH HOH . 
L 4 HOH B 19 419 419 HOH HOH . 
L 4 HOH B 20 420 420 HOH HOH . 
L 4 HOH B 21 421 421 HOH HOH . 
M 4 HOH C 1 401 401 HOH HOH . 
M 4 HOH C 2 402 402 HOH HOH . 
M 4 HOH C 3 403 403 HOH HOH . 
M 4 HOH C 4 404 404 HOH HOH . 
M 4 HOH C 5 405 405 HOH HOH . 
M 4 HOH C 6 406 406 HOH HOH . 
M 4 HOH C 7 407 407 HOH HOH . 
M 4 HOH C 8 408 408 HOH HOH . 
M 4 HOH C 9 409 409 HOH HOH . 
M 4 HOH C 10 410 411 HOH HOH . 
M 4 HOH C 11 411 412 HOH HOH . 
M 4 HOH C 12 412 413 HOH HOH . 
M 4 HOH C 13 413 414 HOH HOH . 
N 4 HOH D 1 401 410 HOH HOH . 
N 4 HOH D 2 402 401 HOH HOH . 
N 4 HOH D 3 403 402 HOH HOH . 
N 4 HOH D 4 404 403 HOH HOH . 
N 4 HOH D 5 405 404 HOH HOH . 
N 4 HOH D 6 406 405 HOH HOH . 
N 4 HOH D 7 407 406 HOH HOH . 
N 4 HOH D 8 408 407 HOH HOH . 
N 4 HOH D 9 409 408 HOH HOH . 
N 4 HOH D 10 410 409 HOH HOH . 
N 4 HOH D 11 411 410 HOH HOH . 
N 4 HOH D 12 412 411 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEQ . . . I 3 -15.682 -0.771 -44.826 1 10 ? C1 DEQ 301 D 1 
HETATM 2 C C2 DEQ . . . I 3 -16.988 -1.04 -45.126 1 10 ? C2 DEQ 301 D 1 
HETATM 3 C C3 DEQ . . . I 3 -17.863 -0.008 -45.305 1 10 ? C3 DEQ 301 D 1 
HETATM 4 C C4 DEQ . . . I 3 -17.422 1.277 -45.174 1 10 ? C4 DEQ 301 D 1 
HETATM 5 C C5 DEQ . . . I 3 -15.254 0.514 -44.691 1 10 ? C5 DEQ 301 D 1 
HETATM 6 C C6 DEQ . . . I 3 -16.127 1.521 -44.885 1 10 ? C6 DEQ 301 D 1 
HETATM 7 C C7 DEQ . . . I 3 -15.74 2.799 -44.766 1 10 ? C7 DEQ 301 D 1 
HETATM 8 C C8 DEQ . . . I 3 -14.426 3.054 -44.461 1 10 ? C8 DEQ 301 D 1 
HETATM 9 C C9 DEQ . . . I 3 -13.541 2.031 -44.276 1 10 ? C9 DEQ 301 D 1 
HETATM 10 N N1 DEQ . . . I 3 -13.915 0.709 -44.434 1 10 ? N1 DEQ 301 D 1 
HETATM 11 C C10 DEQ . . . I 3 -6.054 5.222 -39.242 1 10 ? C10 DEQ 301 D 1 
HETATM 12 C C11 DEQ . . . I 3 -5.846 3.863 -39.705 1 10 ? C11 DEQ 301 D 1 
HETATM 13 N N2 DEQ . . . I 3 -5.917 2.857 -38.779 1 10 ? N2 DEQ 301 D 1 
HETATM 14 C C12 DEQ . . . I 3 -6.179 3.165 -37.448 1 10 ? C12 DEQ 301 D 1 
HETATM 15 C C13 DEQ . . . I 3 -6.376 4.453 -37.016 1 10 ? C13 DEQ 301 D 1 
HETATM 16 C C14 DEQ . . . I 3 -6.311 5.47 -37.934 1 10 ? C14 DEQ 301 D 1 
HETATM 17 C C15 DEQ . . . I 3 -5.993 6.232 -40.133 1 10 ? C15 DEQ 301 D 1 
HETATM 18 C C16 DEQ . . . I 3 -5.729 5.914 -41.443 1 10 ? C16 DEQ 301 D 1 
HETATM 19 C C17 DEQ . . . I 3 -5.532 4.639 -41.897 1 10 ? C17 DEQ 301 D 1 
HETATM 20 C C18 DEQ . . . I 3 -5.588 3.601 -41.016 1 10 ? C18 DEQ 301 D 1 
HETATM 21 C C19 DEQ . . . I 3 -5.707 1.511 -39.245 1 10 ? C19 DEQ 301 D 1 
HETATM 22 C C20 DEQ . . . I 3 -6.195 1.418 -40.661 1 10 ? C20 DEQ 301 D 1 
HETATM 23 C C21 DEQ . . . I 3 -6.334 -0.019 -41.073 1 10 ? C21 DEQ 301 D 1 
HETATM 24 C C22 DEQ . . . I 3 -7.187 -0.111 -42.309 1 10 ? C22 DEQ 301 D 1 
HETATM 25 C C23 DEQ . . . I 3 -8.382 -0.946 -41.963 1 10 ? C23 DEQ 301 D 1 
HETATM 26 C C24 DEQ . . . I 3 -9.577 -0.522 -42.763 1 10 ? C24 DEQ 301 D 1 
HETATM 27 C C25 DEQ . . . I 3 -10.819 -0.818 -41.96 1 10 ? C25 DEQ 301 D 1 
HETATM 28 C C26 DEQ . . . I 3 -11.776 -1.73 -42.701 1 10 ? C26 DEQ 301 D 1 
HETATM 29 C C27 DEQ . . . I 3 -12.424 -1.031 -43.868 1 10 ? C27 DEQ 301 D 1 
HETATM 30 C C28 DEQ . . . I 3 -13.493 -0.128 -43.342 1 10 ? C28 DEQ 301 D 1 
HETATM 31 C C30 DEQ . . . I 3 -12.127 2.345 -43.953 1 10 ? C30 DEQ 301 D 1 
HETATM 32 C C29 DEQ . . . I 3 -6.237 2.066 -36.458 1 10 ? C29 DEQ 301 D 1 
HETATM 33 N N4 DEQ . . . I 3 -16.73 3.879 -44.961 1 10 ? N4 DEQ 301 D 1 
HETATM 34 N N3 DEQ . . . I 3 -6.503 6.872 -37.555 1 10 ? N3 DEQ 301 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#