data_3VW1 # _model_server_result.job_id rqCm7o00IxnqqwRj60-PAw _model_server_result.datetime_utc '2024-10-14 18:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 3VW1 # _exptl.entry_id 3VW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.526 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CRYSTAL VIOLET' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.45 _cell.angle_beta 97.25 _cell.angle_gamma 89.93 _cell.entry_id 3VW1 _cell.length_a 43.594 _cell.length_b 54.741 _cell.length_c 92.711 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # _chem_comp.formula 'C25 H30 N3 1' _chem_comp.formula_weight 372.526 _chem_comp.id CVI _chem_comp.mon_nstd_flag . _chem_comp.name 'CRYSTAL VIOLET' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVI doub 70 n n C1 C8 CVI sing 71 n n C1 C14 CVI sing 72 n n C2 C3 CVI sing 73 n n C2 C7 CVI sing 74 n n C3 C4 CVI doub 75 n n C3 H31 CVI sing 76 n n C4 C5 CVI sing 77 n n C4 H41 CVI sing 78 n n C5 C6 CVI sing 79 n n C5 N1 CVI doub 80 n n C6 C7 CVI doub 81 n n C6 H61 CVI sing 82 n n C7 H71 CVI sing 83 n n C8 C9 CVI doub 84 n y C8 C13 CVI sing 85 n y C9 C10 CVI sing 86 n y C9 H91 CVI sing 87 n n C10 C11 CVI doub 88 n y C10 H101 CVI sing 89 n n C11 C12 CVI sing 90 n y C11 N2 CVI sing 91 n n C12 C13 CVI doub 92 n y C12 H121 CVI sing 93 n n C13 H131 CVI sing 94 n n C14 C15 CVI doub 95 n y C14 C19 CVI sing 96 n y C15 C16 CVI sing 97 n y C15 H151 CVI sing 98 n n C16 C17 CVI doub 99 n y C16 H161 CVI sing 100 n n C17 C18 CVI sing 101 n y C17 N3 CVI sing 102 n n C18 C19 CVI doub 103 n y C18 H181 CVI sing 104 n n C19 H191 CVI sing 105 n n C20 N1 CVI sing 106 n n C20 H201 CVI sing 107 n n C20 H202 CVI sing 108 n n C20 H203 CVI sing 109 n n C21 N1 CVI sing 110 n n C21 H211 CVI sing 111 n n C21 H212 CVI sing 112 n n C21 H213 CVI sing 113 n n C22 N2 CVI sing 114 n n C22 H221 CVI sing 115 n n C22 H222 CVI sing 116 n n C22 H223 CVI sing 117 n n C23 N2 CVI sing 118 n n C23 H231 CVI sing 119 n n C23 H232 CVI sing 120 n n C23 H233 CVI sing 121 n n C24 N3 CVI sing 122 n n C24 H241 CVI sing 123 n n C24 H242 CVI sing 124 n n C24 H243 CVI sing 125 n n C25 N3 CVI sing 126 n n C25 H251 CVI sing 127 n n C25 H252 CVI sing 128 n n C25 H253 CVI sing 129 n n # _atom_sites.entry_id 3VW1 _atom_sites.fract_transf_matrix[1][1] 0.022939 _atom_sites.fract_transf_matrix[1][2] -0.000027 _atom_sites.fract_transf_matrix[1][3] 0.003007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018268 _atom_sites.fract_transf_matrix[2][3] 0.004745 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 201 302 SO4 SO4 . F 3 CL A 1 202 303 CL CL . G 4 CVI B 1 301 301 CVI CVI . H 2 SO4 B 1 302 302 SO4 SO4 . I 2 SO4 C 1 201 302 SO4 SO4 . J 4 CVI D 1 301 301 CVI CVI . K 2 SO4 D 1 302 302 SO4 SO4 . L 5 HOH A 1 401 401 HOH HOH . L 5 HOH A 2 402 402 HOH HOH . L 5 HOH A 3 403 403 HOH HOH . L 5 HOH A 4 404 404 HOH HOH . L 5 HOH A 5 405 405 HOH HOH . L 5 HOH A 6 406 407 HOH HOH . L 5 HOH A 7 407 408 HOH HOH . L 5 HOH A 8 408 409 HOH HOH . L 5 HOH A 9 409 410 HOH HOH . L 5 HOH A 10 410 411 HOH HOH . L 5 HOH A 11 411 412 HOH HOH . L 5 HOH A 12 412 413 HOH HOH . L 5 HOH A 13 413 414 HOH HOH . L 5 HOH A 14 414 415 HOH HOH . L 5 HOH A 15 415 416 HOH HOH . L 5 HOH A 16 416 417 HOH HOH . L 5 HOH A 17 417 418 HOH HOH . L 5 HOH A 18 418 419 HOH HOH . L 5 HOH A 19 419 420 HOH HOH . L 5 HOH A 20 420 421 HOH HOH . L 5 HOH A 21 421 422 HOH HOH . L 5 HOH A 22 422 423 HOH HOH . L 5 HOH A 23 423 424 HOH HOH . L 5 HOH A 24 424 425 HOH HOH . L 5 HOH A 25 425 426 HOH HOH . L 5 HOH A 26 426 427 HOH HOH . L 5 HOH A 27 427 428 HOH HOH . L 5 HOH A 28 428 429 HOH HOH . L 5 HOH A 29 429 430 HOH HOH . L 5 HOH A 30 430 431 HOH HOH . L 5 HOH A 31 431 432 HOH HOH . L 5 HOH A 32 432 433 HOH HOH . L 5 HOH A 33 433 434 HOH HOH . L 5 HOH A 34 434 435 HOH HOH . L 5 HOH A 35 435 436 HOH HOH . L 5 HOH A 36 436 437 HOH HOH . L 5 HOH A 37 437 438 HOH HOH . L 5 HOH A 38 438 439 HOH HOH . L 5 HOH A 39 439 440 HOH HOH . L 5 HOH A 40 440 441 HOH HOH . L 5 HOH A 41 441 442 HOH HOH . L 5 HOH A 42 442 443 HOH HOH . L 5 HOH A 43 443 444 HOH HOH . M 5 HOH B 1 401 406 HOH HOH . M 5 HOH B 2 402 401 HOH HOH . M 5 HOH B 3 403 402 HOH HOH . M 5 HOH B 4 404 403 HOH HOH . M 5 HOH B 5 405 404 HOH HOH . M 5 HOH B 6 406 405 HOH HOH . M 5 HOH B 7 407 407 HOH HOH . M 5 HOH B 8 408 408 HOH HOH . M 5 HOH B 9 409 409 HOH HOH . M 5 HOH B 10 410 410 HOH HOH . M 5 HOH B 11 411 411 HOH HOH . M 5 HOH B 12 412 413 HOH HOH . M 5 HOH B 13 413 414 HOH HOH . M 5 HOH B 14 414 415 HOH HOH . M 5 HOH B 15 415 417 HOH HOH . N 5 HOH C 1 401 401 HOH HOH . N 5 HOH C 2 402 402 HOH HOH . N 5 HOH C 3 403 403 HOH HOH . N 5 HOH C 4 404 404 HOH HOH . N 5 HOH C 5 405 405 HOH HOH . N 5 HOH C 6 406 407 HOH HOH . N 5 HOH C 7 407 408 HOH HOH . N 5 HOH C 8 408 409 HOH HOH . N 5 HOH C 9 409 410 HOH HOH . N 5 HOH C 10 410 411 HOH HOH . N 5 HOH C 11 411 412 HOH HOH . N 5 HOH C 12 412 413 HOH HOH . N 5 HOH C 13 413 414 HOH HOH . N 5 HOH C 14 414 415 HOH HOH . N 5 HOH C 15 415 416 HOH HOH . N 5 HOH C 16 416 418 HOH HOH . N 5 HOH C 17 417 419 HOH HOH . N 5 HOH C 18 418 420 HOH HOH . N 5 HOH C 19 419 421 HOH HOH . N 5 HOH C 20 420 422 HOH HOH . N 5 HOH C 21 421 423 HOH HOH . N 5 HOH C 22 422 424 HOH HOH . N 5 HOH C 23 423 425 HOH HOH . N 5 HOH C 24 424 426 HOH HOH . N 5 HOH C 25 425 427 HOH HOH . N 5 HOH C 26 426 428 HOH HOH . N 5 HOH C 27 427 429 HOH HOH . N 5 HOH C 28 428 430 HOH HOH . N 5 HOH C 29 429 431 HOH HOH . O 5 HOH D 1 401 412 HOH HOH . O 5 HOH D 2 402 417 HOH HOH . O 5 HOH D 3 403 401 HOH HOH . O 5 HOH D 4 404 402 HOH HOH . O 5 HOH D 5 405 403 HOH HOH . O 5 HOH D 6 406 404 HOH HOH . O 5 HOH D 7 407 405 HOH HOH . O 5 HOH D 8 408 406 HOH HOH . O 5 HOH D 9 409 407 HOH HOH . O 5 HOH D 10 410 408 HOH HOH . O 5 HOH D 11 411 409 HOH HOH . O 5 HOH D 12 412 410 HOH HOH . O 5 HOH D 13 413 411 HOH HOH . O 5 HOH D 14 414 412 HOH HOH . O 5 HOH D 15 415 413 HOH HOH . O 5 HOH D 16 416 414 HOH HOH . O 5 HOH D 17 417 415 HOH HOH . O 5 HOH D 18 418 416 HOH HOH . O 5 HOH D 19 419 418 HOH HOH . O 5 HOH D 20 420 419 HOH HOH . O 5 HOH D 21 421 420 HOH HOH . O 5 HOH D 22 422 421 HOH HOH . O 5 HOH D 23 423 422 HOH HOH . O 5 HOH D 24 424 423 HOH HOH . O 5 HOH D 25 425 424 HOH HOH . O 5 HOH D 26 426 425 HOH HOH . O 5 HOH D 27 427 426 HOH HOH . O 5 HOH D 28 428 427 HOH HOH . O 5 HOH D 29 429 428 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CVI . . . J 4 -3.378 -4.185 19.62 1 43.31 ? C1 CVI 301 D 1 HETATM 2 C C2 CVI . . . J 4 -2.741 -3.395 20.669 1 44.79 ? C2 CVI 301 D 1 HETATM 3 C C3 CVI . . . J 4 -1.386 -3.516 20.871 1 44.78 ? C3 CVI 301 D 1 HETATM 4 C C4 CVI . . . J 4 -0.763 -2.799 21.886 1 46.44 ? C4 CVI 301 D 1 HETATM 5 C C5 CVI . . . J 4 -1.554 -1.933 22.715 1 50.61 ? C5 CVI 301 D 1 HETATM 6 C C6 CVI . . . J 4 -2.933 -1.802 22.505 1 44.4 ? C6 CVI 301 D 1 HETATM 7 C C7 CVI . . . J 4 -3.51 -2.546 21.474 1 48.97 ? C7 CVI 301 D 1 HETATM 8 C C8 CVI . . . J 4 -4.85 -4.401 19.673 1 43.94 ? C8 CVI 301 D 1 HETATM 9 C C9 CVI . . . J 4 -5.64 -4.029 18.586 1 39.72 ? C9 CVI 301 D 1 HETATM 10 C C10 CVI . . . J 4 -7.025 -4.169 18.714 1 43.3 ? C10 CVI 301 D 1 HETATM 11 C C11 CVI . . . J 4 -7.653 -4.74 19.828 1 40.96 ? C11 CVI 301 D 1 HETATM 12 C C12 CVI . . . J 4 -6.839 -5.195 20.88 1 42.67 ? C12 CVI 301 D 1 HETATM 13 C C13 CVI . . . J 4 -5.401 -5.029 20.824 1 39.01 ? C13 CVI 301 D 1 HETATM 14 C C14 CVI . . . J 4 -2.641 -4.735 18.496 1 42.25 ? C14 CVI 301 D 1 HETATM 15 C C15 CVI . . . J 4 -1.559 -4.028 17.89 1 41.58 ? C15 CVI 301 D 1 HETATM 16 C C16 CVI . . . J 4 -0.926 -4.586 16.722 1 46.53 ? C16 CVI 301 D 1 HETATM 17 C C17 CVI . . . J 4 -1.395 -5.852 16.255 1 45.96 ? C17 CVI 301 D 1 HETATM 18 C C18 CVI . . . J 4 -2.494 -6.509 16.864 1 46.46 ? C18 CVI 301 D 1 HETATM 19 C C19 CVI . . . J 4 -3.12 -5.963 18.011 1 42.55 ? C19 CVI 301 D 1 HETATM 20 C C20 CVI . . . J 4 0.607 -1.35 23.733 1 45.53 ? C20 CVI 301 D 1 HETATM 21 C C21 CVI . . . J 4 -1.588 -0.611 24.894 1 42.65 ? C21 CVI 301 D 1 HETATM 22 C C22 CVI . . . J 4 -9.95 -4.328 18.856 1 38.16 ? C22 CVI 301 D 1 HETATM 23 C C23 CVI . . . J 4 -9.469 -5.792 20.947 1 42.5 ? C23 CVI 301 D 1 HETATM 24 C C24 CVI . . . J 4 0.358 -5.804 14.475 1 43.42 ? C24 CVI 301 D 1 HETATM 25 C C25 CVI . . . J 4 -1.339 -7.612 14.483 1 40.16 ? C25 CVI 301 D 1 HETATM 26 N N1 CVI . . . J 4 -0.874 -1.259 23.771 1 48 ? N1 CVI 301 D 1 HETATM 27 N N2 CVI . . . J 4 -9.042 -4.931 19.846 1 41.08 ? N2 CVI 301 D 1 HETATM 28 N N3 CVI . . . J 4 -0.799 -6.414 15.114 1 44.88 ? N3 CVI 301 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 567 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #