data_3VW7 # _model_server_result.job_id sRTKDJqmtLyeRhklzBIfCA _model_server_result.datetime_utc '2024-10-11 00:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2009}' # _entry.id 3VW7 # _exptl.entry_id 3VW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VW7 _cell.length_a 44.044 _cell.length_b 71.46 _cell.length_c 172.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 175 1_555 A SG CYS 172 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD2 ASP 66 A ASP 148 1_555 M NA NA . A NA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 A OG SER 107 A SER 189 1_555 M NA NA . A NA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc3 A OD2 ASP 444 A ASP 367 1_555 M NA NA . A NA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 M NA NA . A NA 2012 1_555 N O HOH . A HOH 3065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 M NA NA . A NA 2012 1_555 N O HOH . A HOH 3066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 3VW7 _atom_sites.fract_transf_matrix[1][1] 0.022705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VPX A 1 2001 2001 VPX VPX . C 3 OLC A 1 2002 4001 OLC MOG . D 3 OLC A 1 2003 4002 OLC MOG . E 3 OLC A 1 2004 4003 OLC MOG . F 3 OLC A 1 2005 4004 OLC MOG . G 3 OLC A 1 2006 4005 OLC MOG . H 3 OLC A 1 2007 4006 OLC MOG . I 3 OLC A 1 2008 4007 OLC MOG . J 3 OLC A 1 2009 4008 OLC MOG . K 3 OLC A 1 2010 4009 OLC MOG . L 4 CL A 1 2011 5001 CL CL . M 5 NA A 1 2012 5002 NA NA . N 6 HOH A 1 3001 3001 HOH HOH . N 6 HOH A 2 3002 3003 HOH HOH . N 6 HOH A 3 3003 3004 HOH HOH . N 6 HOH A 4 3004 3005 HOH HOH . N 6 HOH A 5 3005 3006 HOH HOH . N 6 HOH A 6 3006 3007 HOH HOH . N 6 HOH A 7 3007 3008 HOH HOH . N 6 HOH A 8 3008 3009 HOH HOH . N 6 HOH A 9 3009 3010 HOH HOH . N 6 HOH A 10 3010 3011 HOH HOH . N 6 HOH A 11 3011 3012 HOH HOH . N 6 HOH A 12 3012 3013 HOH HOH . N 6 HOH A 13 3013 3018 HOH HOH . N 6 HOH A 14 3014 3020 HOH HOH . N 6 HOH A 15 3015 3021 HOH HOH . N 6 HOH A 16 3016 3022 HOH HOH . N 6 HOH A 17 3017 3023 HOH HOH . N 6 HOH A 18 3018 3025 HOH HOH . N 6 HOH A 19 3019 3026 HOH HOH . N 6 HOH A 20 3020 3027 HOH HOH . N 6 HOH A 21 3021 3028 HOH HOH . N 6 HOH A 22 3022 3030 HOH HOH . N 6 HOH A 23 3023 3031 HOH HOH . N 6 HOH A 24 3024 3033 HOH HOH . N 6 HOH A 25 3025 3034 HOH HOH . N 6 HOH A 26 3026 3040 HOH HOH . N 6 HOH A 27 3027 3043 HOH HOH . N 6 HOH A 28 3028 3048 HOH HOH . N 6 HOH A 29 3029 3049 HOH HOH . N 6 HOH A 30 3030 3050 HOH HOH . N 6 HOH A 31 3031 3051 HOH HOH . N 6 HOH A 32 3032 3052 HOH HOH . N 6 HOH A 33 3033 3053 HOH HOH . N 6 HOH A 34 3034 3054 HOH HOH . N 6 HOH A 35 3035 3055 HOH HOH . N 6 HOH A 36 3036 3056 HOH HOH . N 6 HOH A 37 3037 3058 HOH HOH . N 6 HOH A 38 3038 3059 HOH HOH . N 6 HOH A 39 3039 3060 HOH HOH . N 6 HOH A 40 3040 3061 HOH HOH . N 6 HOH A 41 3041 3064 HOH HOH . N 6 HOH A 42 3042 3065 HOH HOH . N 6 HOH A 43 3043 3067 HOH HOH . N 6 HOH A 44 3044 3068 HOH HOH . N 6 HOH A 45 3045 3069 HOH HOH . N 6 HOH A 46 3046 3070 HOH HOH . N 6 HOH A 47 3047 3071 HOH HOH . N 6 HOH A 48 3048 3072 HOH HOH . N 6 HOH A 49 3049 3073 HOH HOH . N 6 HOH A 50 3050 3076 HOH HOH . N 6 HOH A 51 3051 3078 HOH HOH . N 6 HOH A 52 3052 3079 HOH HOH . N 6 HOH A 53 3053 3081 HOH HOH . N 6 HOH A 54 3054 3082 HOH HOH . N 6 HOH A 55 3055 3083 HOH HOH . N 6 HOH A 56 3056 3084 HOH HOH . N 6 HOH A 57 3057 3085 HOH HOH . N 6 HOH A 58 3058 3086 HOH HOH . N 6 HOH A 59 3059 3087 HOH HOH . N 6 HOH A 60 3060 3088 HOH HOH . N 6 HOH A 61 3061 3089 HOH HOH . N 6 HOH A 62 3062 3090 HOH HOH . N 6 HOH A 63 3063 3091 HOH HOH . N 6 HOH A 64 3064 3092 HOH HOH . N 6 HOH A 65 3065 3101 HOH HOH . N 6 HOH A 66 3066 3103 HOH HOH . N 6 HOH A 67 3067 3104 HOH HOH . N 6 HOH A 68 3068 3105 HOH HOH . N 6 HOH A 69 3069 3106 HOH HOH . N 6 HOH A 70 3070 3108 HOH HOH . N 6 HOH A 71 3071 3109 HOH HOH . N 6 HOH A 72 3072 3110 HOH HOH . N 6 HOH A 73 3073 3111 HOH HOH . N 6 HOH A 74 3074 3112 HOH HOH . N 6 HOH A 75 3075 3114 HOH HOH . N 6 HOH A 76 3076 3115 HOH HOH . N 6 HOH A 77 3077 3116 HOH HOH . N 6 HOH A 78 3078 3117 HOH HOH . N 6 HOH A 79 3079 3118 HOH HOH . N 6 HOH A 80 3080 3119 HOH HOH . N 6 HOH A 81 3081 3120 HOH HOH . N 6 HOH A 82 3082 3121 HOH HOH . N 6 HOH A 83 3083 3122 HOH HOH . N 6 HOH A 84 3084 3123 HOH HOH . N 6 HOH A 85 3085 3124 HOH HOH . N 6 HOH A 86 3086 3125 HOH HOH . N 6 HOH A 87 3087 3126 HOH HOH . N 6 HOH A 88 3088 3127 HOH HOH . N 6 HOH A 89 3089 3128 HOH HOH . N 6 HOH A 90 3090 3129 HOH HOH . N 6 HOH A 91 3091 3130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 6.532 5.586 52.89 1 54.87 ? C18 OLC 2009 A 1 HETATM 2 C C10 OLC . . . J 3 6.62 0.922 50.18 1 56.69 ? C10 OLC 2009 A 1 HETATM 3 C C9 OLC . . . J 3 6.139 0.386 51.53 1 54.37 ? C9 OLC 2009 A 1 HETATM 4 C C17 OLC . . . J 3 6.178 5.924 51.441 1 53.79 ? C17 OLC 2009 A 1 HETATM 5 C C11 OLC . . . J 3 5.585 0.861 49.055 1 59.37 ? C11 OLC 2009 A 1 HETATM 6 C C8 OLC . . . J 3 4.698 -0.129 51.546 1 52.28 ? C8 OLC 2009 A 1 HETATM 7 C C24 OLC . . . J 3 6.108 -1.27 61.628 1 82.26 ? C24 OLC 2009 A 1 HETATM 8 C C16 OLC . . . J 3 7.459 6.014 50.611 1 57.86 ? C16 OLC 2009 A 1 HETATM 9 C C12 OLC . . . J 3 5.806 2.03 48.094 1 61.41 ? C12 OLC 2009 A 1 HETATM 10 C C7 OLC . . . J 3 4.594 -1.323 52.497 1 51.3 ? C7 OLC 2009 A 1 HETATM 11 C C15 OLC . . . J 3 7.824 4.625 50.082 1 65.02 ? C15 OLC 2009 A 1 HETATM 12 C C13 OLC . . . J 3 7.035 2.828 48.535 1 63.65 ? C13 OLC 2009 A 1 HETATM 13 C C6 OLC . . . J 3 3.203 -1.349 53.133 1 51.64 ? C6 OLC 2009 A 1 HETATM 14 C C14 OLC . . . J 3 6.595 3.988 49.43 1 66.93 ? C14 OLC 2009 A 1 HETATM 15 C C5 OLC . . . J 3 3.226 -0.562 54.444 1 54.46 ? C5 OLC 2009 A 1 HETATM 16 C C4 OLC . . . J 3 2.034 -0.977 55.309 1 57.47 ? C4 OLC 2009 A 1 HETATM 17 C C3 OLC . . . J 3 2.118 -0.273 56.664 1 63.13 ? C3 OLC 2009 A 1 HETATM 18 C C2 OLC . . . J 3 3.147 -0.984 57.545 1 70.9 ? C2 OLC 2009 A 1 HETATM 19 C C21 OLC . . . J 3 5.212 -1.204 59.297 1 82.67 ? C21 OLC 2009 A 1 HETATM 20 C C1 OLC . . . J 3 4.535 -0.403 57.274 1 78.73 ? C1 OLC 2009 A 1 HETATM 21 C C22 OLC . . . J 3 6.481 -1.144 60.15 1 83.71 ? C22 OLC 2009 A 1 HETATM 22 O O19 OLC . . . J 3 4.683 0.557 56.519 1 82.52 ? O19 OLC 2009 A 1 HETATM 23 O O25 OLC . . . J 3 4.708 -1.028 61.789 1 80.16 ? O25 OLC 2009 A 1 HETATM 24 O O23 OLC . . . J 3 7.354 -2.216 59.784 1 83.3 ? O23 OLC 2009 A 1 HETATM 25 O O20 OLC . . . J 3 5.556 -1.025 57.922 1 81.16 ? O20 OLC 2009 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #